Wall clock time and date at job start Tue Mar 31 2020 08:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 C 1.38234 * 119.99770 * 269.72838 * 5 4 2 7 7 C 1.38239 * 119.99901 * 179.76875 * 6 5 4 8 8 C 1.38240 * 119.99645 * 0.50240 * 7 6 5 9 9 C 1.50698 * 119.99659 * 179.72727 * 8 7 6 10 10 H 1.09003 * 109.47112 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47457 * 60.02455 * 9 8 7 12 12 C 1.50703 * 109.47465 * 300.02380 * 9 8 7 13 13 O 1.20826 * 119.99501 * 0.02562 * 12 9 8 14 14 O 1.34224 * 120.00274 * 180.02562 * 12 9 8 15 15 C 1.45203 * 117.00014 * 179.97438 * 14 12 9 16 16 C 1.52996 * 109.46914 * 180.02562 * 15 14 12 17 17 C 1.50711 * 109.46894 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99569 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99783 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99961 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00381 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47156 * 89.99800 * 21 19 17 23 23 H 1.48493 * 109.47094 * 210.00136 * 21 19 17 24 24 H 1.48503 * 109.46758 * 329.99898 * 21 19 17 25 25 C 1.38227 * 120.00205 * 359.74956 * 8 7 6 26 26 C 1.38232 * 119.99860 * 90.00280 * 5 4 2 27 27 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 28 28 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 29 29 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 31 31 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 32 32 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 34 34 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 35 35 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 36 36 H 1.08001 * 120.00330 * 359.97438 * 6 5 4 37 37 H 1.08001 * 119.99843 * 180.23314 * 7 6 5 38 38 H 1.09003 * 109.46818 * 300.00007 * 11 9 8 39 39 H 1.09001 * 109.47290 * 59.99484 * 11 9 8 40 40 H 1.08992 * 109.47505 * 179.97438 * 11 9 8 41 41 H 1.09007 * 109.46961 * 300.00355 * 15 14 12 42 42 H 1.08997 * 109.47004 * 60.00015 * 15 14 12 43 43 H 1.08994 * 109.47375 * 299.99719 * 16 15 14 44 44 H 1.09003 * 109.47023 * 60.00415 * 16 15 14 45 45 H 0.96996 * 120.00056 * 179.97438 * 20 19 17 46 46 H 1.07996 * 120.00251 * 179.97438 * 25 8 7 47 47 H 1.07998 * 120.00407 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1890 6 6 4.1323 -1.9319 0.6003 7 6 5.5100 -2.0288 0.5407 8 6 6.2972 -1.0281 1.0791 9 6 7.7991 -1.1368 1.0196 10 1 8.2457 -0.2614 1.4913 11 6 8.2475 -1.2134 -0.4412 12 6 8.2421 -2.3801 1.7469 13 8 7.4222 -3.1040 2.2604 14 8 9.5473 -2.6834 1.8242 15 6 9.9011 -3.8958 2.5406 16 6 11.4207 -4.0733 2.5234 17 6 11.7879 -5.3314 3.2675 18 1 11.0147 -5.9428 3.7089 19 6 13.1108 -5.7017 3.3847 20 7 13.4313 -6.7992 4.0345 21 14 14.4481 -4.6437 2.6218 22 1 14.9018 -3.6314 3.6090 23 1 15.5948 -5.5018 2.2299 24 1 13.9104 -3.9568 1.4200 25 6 5.7068 0.0719 1.6725 26 6 4.3290 0.1713 1.7275 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.7515 -0.1582 2.1370 35 1 1.6053 -1.7197 1.2953 36 1 3.5173 -2.7159 0.1839 37 1 5.9713 -2.8884 0.0773 38 1 7.8009 -2.0888 -0.9128 39 1 7.9271 -0.3142 -0.9673 40 1 9.3337 -1.2915 -0.4842 41 1 9.5559 -3.8223 3.5719 42 1 9.4293 -4.7527 2.0598 43 1 11.7662 -4.1467 1.4923 44 1 11.8920 -3.2163 3.0045 45 1 14.3620 -7.0599 4.1166 46 1 6.3218 0.8535 2.0935 47 1 3.8677 1.0304 2.1918 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758857504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:07 Heat of formation + Delta-G solvation = -99.372256 kcal Electronic energy + Delta-G solvation = -24095.171225 eV Core-core repulsion = 20627.594452 eV Total energy + Delta-G solvation = -3467.576773 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54566 -39.42718 -36.94923 -36.01526 -34.16974 -33.27796 -31.10582 -30.86613 -30.28859 -27.49716 -26.61103 -25.65782 -24.12075 -22.85429 -21.84126 -20.66623 -20.28522 -19.91849 -17.45610 -16.70593 -16.64402 -16.17122 -15.84447 -15.47663 -15.09573 -14.72774 -14.60370 -14.22145 -13.86437 -13.74476 -13.42772 -13.29752 -13.14192 -12.74042 -12.58557 -12.53877 -12.29987 -12.12169 -12.05697 -11.77615 -11.53686 -11.44787 -11.28198 -11.15472 -11.03646 -10.90298 -10.81155 -10.68412 -10.49767 -9.96389 -9.83588 -9.69627 -9.35178 -8.94096 -8.62957 -8.61860 -6.13397 -4.14611 1.18727 1.36192 2.52667 3.08986 3.27222 3.34554 3.38784 3.72473 4.37445 4.37909 4.49423 4.54204 4.63796 4.69326 4.90340 4.94436 5.02865 5.03957 5.18849 5.20066 5.23673 5.29713 5.32309 5.40343 5.47711 5.52296 5.58404 5.62316 5.64787 5.73030 5.75191 5.93087 5.95265 5.97345 5.98053 5.98446 6.02897 6.04549 6.32919 6.45326 6.52104 6.52683 6.79840 6.92615 7.19460 7.21911 7.62010 8.15972 8.39317 8.88282 9.46081 10.99165 Molecular weight = 304.18amu Principal moments of inertia in cm(-1) A = 0.038693 B = 0.002265 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.470724 B =12357.963697 C =12701.989688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.077 4.077 5 C -0.079 4.079 6 C -0.119 4.119 7 C -0.080 4.080 8 C -0.076 4.076 9 C -0.045 4.045 10 H 0.113 0.887 11 C -0.140 4.140 12 C 0.458 3.542 13 O -0.505 6.505 14 O -0.360 6.360 15 C 0.082 3.918 16 C -0.009 4.009 17 C -0.528 4.528 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.882 3.118 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.263 1.263 25 C -0.107 4.107 26 C -0.119 4.119 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.028 0.972 44 H 0.023 0.977 45 H 0.266 0.734 46 H 0.122 0.878 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.366 18.054 -10.366 30.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.114 4.114 5 C -0.079 4.079 6 C -0.137 4.137 7 C -0.098 4.098 8 C -0.076 4.076 9 C -0.064 4.064 10 H 0.131 0.869 11 C -0.198 4.198 12 C 0.300 3.700 13 O -0.393 6.393 14 O -0.276 6.276 15 C 0.010 3.990 16 C -0.047 4.047 17 C -0.565 4.565 18 H 0.093 0.907 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.708 3.292 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.125 4.125 26 C -0.137 4.137 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.076 0.924 46 H 0.140 0.860 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -22.422 17.677 -10.133 30.297 hybrid contribution 0.803 0.210 -0.077 0.834 sum -21.619 17.887 -10.210 29.859 Atomic orbital electron populations 1.21856 0.95155 1.01744 1.01758 1.21082 0.95358 0.96552 0.97985 1.21925 1.01783 0.95657 1.01415 1.20686 0.91152 1.01229 0.98316 1.19829 0.95430 0.94532 0.98098 1.20966 0.94541 0.97783 1.00381 1.20920 0.93457 0.97496 0.97951 1.19317 0.93067 0.95580 0.99685 1.19939 0.92873 0.95556 0.98005 0.86940 1.21781 1.02809 1.02936 0.92245 1.23368 0.81569 0.86835 0.78217 1.90661 1.54005 1.50697 1.43974 1.86472 1.25565 1.45797 1.69792 1.23374 0.99002 0.81741 0.94888 1.19623 0.88714 0.98049 0.98270 1.20849 0.93917 1.06682 1.35089 0.90678 1.24944 0.98564 0.94967 0.94585 1.69897 1.18432 1.23587 1.41566 0.86744 0.81408 0.80547 0.80469 1.20061 1.21166 1.18759 1.20974 0.94933 0.97630 0.98972 1.20918 0.93250 0.98786 1.00764 0.92684 0.92685 0.92674 0.91095 0.92826 0.91992 0.92973 0.91061 0.91025 0.86226 0.86275 0.91930 0.91118 0.90490 0.91794 0.91757 0.95383 0.95828 0.92439 0.86032 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.19 37.16 0.34 -0.50 16 2 C -0.09 -0.62 2.91 -90.62 -0.26 -0.88 16 3 C -0.15 -0.99 8.76 37.16 0.33 -0.66 16 4 C -0.08 -0.59 4.84 -27.88 -0.13 -0.72 16 5 C -0.08 -0.78 4.71 -104.62 -0.49 -1.27 16 6 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 7 C -0.08 -1.00 7.93 -39.58 -0.31 -1.32 16 8 C -0.08 -0.93 4.40 -104.63 -0.46 -1.39 16 9 C -0.04 -0.55 3.01 -92.92 -0.28 -0.83 16 10 H 0.11 1.17 7.88 -51.93 -0.41 0.76 16 11 C -0.14 -1.45 8.94 37.16 0.33 -1.12 16 12 C 0.46 7.77 7.12 36.01 0.26 8.03 16 13 O -0.51 -9.95 14.86 -18.75 -0.28 -10.23 16 14 O -0.36 -6.82 10.12 -39.24 -0.40 -7.21 16 15 C 0.08 1.79 5.40 37.16 0.20 1.99 16 16 C -0.01 -0.22 4.42 -27.88 -0.12 -0.35 16 17 C -0.53 -15.08 9.66 -34.44 -0.33 -15.42 16 18 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 20 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 21 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 25 C -0.11 -1.14 9.67 -39.58 -0.38 -1.53 16 26 C -0.12 -1.17 7.96 -39.58 -0.32 -1.48 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.46 6.26 -51.93 -0.33 0.13 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.12 1.52 7.52 -52.49 -0.39 1.13 16 38 H 0.06 0.66 7.39 -51.93 -0.38 0.27 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 41 H 0.06 1.40 8.13 -51.92 -0.42 0.98 16 42 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 43 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 44 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.12 1.06 7.95 -52.49 -0.42 0.64 16 47 H 0.12 0.94 8.04 -52.49 -0.42 0.52 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -32.03 382.98 -9.12 -41.15 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -8.19 Total: -2.43 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -2.12 Total: -17.16 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.65 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.68 Total: -17.45 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.03 -9.12 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758857504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.226 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds