Wall clock time and date at job start Tue Mar 31 2020 08:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 C 1.38234 * 119.99770 * 269.72838 * 5 4 2 7 7 C 1.38239 * 119.99901 * 179.76875 * 6 5 4 8 8 C 1.38240 * 119.99645 * 0.50240 * 7 6 5 9 9 C 1.50698 * 119.99659 * 179.72727 * 8 7 6 10 10 H 1.09003 * 109.47112 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47457 * 60.02455 * 9 8 7 12 12 C 1.50703 * 109.47465 * 300.02380 * 9 8 7 13 13 O 1.20826 * 119.99501 * 0.02562 * 12 9 8 14 14 O 1.34224 * 120.00274 * 180.02562 * 12 9 8 15 15 C 1.45203 * 117.00014 * 179.97438 * 14 12 9 16 16 C 1.52996 * 109.46914 * 180.02562 * 15 14 12 17 17 C 1.50711 * 109.46894 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99569 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99783 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99961 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00381 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47156 * 89.99800 * 21 19 17 23 23 H 1.48493 * 109.47094 * 210.00136 * 21 19 17 24 24 H 1.48503 * 109.46758 * 329.99898 * 21 19 17 25 25 C 1.38227 * 120.00205 * 359.74956 * 8 7 6 26 26 C 1.38232 * 119.99860 * 90.00280 * 5 4 2 27 27 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 28 28 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 29 29 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 31 31 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 32 32 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 34 34 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 35 35 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 36 36 H 1.08001 * 120.00330 * 359.97438 * 6 5 4 37 37 H 1.08001 * 119.99843 * 180.23314 * 7 6 5 38 38 H 1.09003 * 109.46818 * 300.00007 * 11 9 8 39 39 H 1.09001 * 109.47290 * 59.99484 * 11 9 8 40 40 H 1.08992 * 109.47505 * 179.97438 * 11 9 8 41 41 H 1.09007 * 109.46961 * 300.00355 * 15 14 12 42 42 H 1.08997 * 109.47004 * 60.00015 * 15 14 12 43 43 H 1.08994 * 109.47375 * 299.99719 * 16 15 14 44 44 H 1.09003 * 109.47023 * 60.00415 * 16 15 14 45 45 H 0.96996 * 120.00056 * 179.97438 * 20 19 17 46 46 H 1.07996 * 120.00251 * 179.97438 * 25 8 7 47 47 H 1.07998 * 120.00407 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1890 6 6 4.1323 -1.9319 0.6003 7 6 5.5100 -2.0288 0.5407 8 6 6.2972 -1.0281 1.0791 9 6 7.7991 -1.1368 1.0196 10 1 8.2457 -0.2614 1.4913 11 6 8.2475 -1.2134 -0.4412 12 6 8.2421 -2.3801 1.7469 13 8 7.4222 -3.1040 2.2604 14 8 9.5473 -2.6834 1.8242 15 6 9.9011 -3.8958 2.5406 16 6 11.4207 -4.0733 2.5234 17 6 11.7879 -5.3314 3.2675 18 1 11.0147 -5.9428 3.7089 19 6 13.1108 -5.7017 3.3847 20 7 13.4313 -6.7992 4.0345 21 14 14.4481 -4.6437 2.6218 22 1 14.9018 -3.6314 3.6090 23 1 15.5948 -5.5018 2.2299 24 1 13.9104 -3.9568 1.4200 25 6 5.7068 0.0719 1.6725 26 6 4.3290 0.1713 1.7275 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.7515 -0.1582 2.1370 35 1 1.6053 -1.7197 1.2953 36 1 3.5173 -2.7159 0.1839 37 1 5.9713 -2.8884 0.0773 38 1 7.8009 -2.0888 -0.9128 39 1 7.9271 -0.3142 -0.9673 40 1 9.3337 -1.2915 -0.4842 41 1 9.5559 -3.8223 3.5719 42 1 9.4293 -4.7527 2.0598 43 1 11.7662 -4.1467 1.4923 44 1 11.8920 -3.2163 3.0045 45 1 14.3620 -7.0599 4.1166 46 1 6.3218 0.8535 2.0935 47 1 3.8677 1.0304 2.1918 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758857504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:06 Heat of formation + Delta-G solvation = -114.345049 kcal Electronic energy + Delta-G solvation = -24095.820494 eV Core-core repulsion = 20627.594452 eV Total energy + Delta-G solvation = -3468.226042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.79411 -40.40990 -37.99335 -37.17090 -35.44682 -34.98922 -32.78195 -31.89549 -31.17499 -27.98272 -27.46341 -27.30552 -25.33103 -23.69086 -22.99928 -22.44857 -21.13386 -20.77804 -19.21330 -18.34531 -17.70170 -17.64852 -16.97663 -16.36340 -16.24150 -15.97342 -15.55632 -15.17480 -15.13290 -14.91483 -14.55150 -14.39547 -14.21154 -14.06504 -13.53220 -13.33389 -13.30489 -13.04260 -13.01724 -12.86518 -12.79111 -12.50859 -12.49434 -12.38800 -12.20774 -11.85305 -11.81686 -11.66798 -11.57204 -11.50390 -11.48389 -11.44159 -11.25897 -10.82459 -9.77065 -9.43858 -8.35595 -6.44190 0.33770 0.53379 1.17000 1.37554 1.39421 1.52211 1.74772 2.33576 2.85555 2.99082 3.45350 3.70473 3.85401 3.92515 4.03748 4.08950 4.10143 4.14362 4.18023 4.20643 4.27607 4.40412 4.57007 4.58433 4.60164 4.78142 4.79887 4.84217 4.86131 4.89108 4.96392 5.02985 5.08074 5.08828 5.14521 5.19206 5.23428 5.27171 5.34700 5.45823 5.48662 5.49297 5.53578 5.55804 5.66776 5.75298 6.11879 6.14041 6.61678 6.72343 7.20889 8.80521 Molecular weight = 304.18amu Principal moments of inertia in cm(-1) A = 0.038693 B = 0.002265 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.470724 B =12357.963697 C =12701.989688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.149 4.149 4 C -0.075 4.075 5 C -0.078 4.078 6 C -0.132 4.132 7 C -0.100 4.100 8 C -0.094 4.094 9 C -0.035 4.035 10 H 0.139 0.861 11 C -0.137 4.137 12 C 0.455 3.545 13 O -0.537 6.537 14 O -0.357 6.357 15 C 0.094 3.906 16 C -0.002 4.002 17 C -0.544 4.544 18 H 0.033 0.967 19 C 0.010 3.990 20 N -0.944 5.944 21 Si 0.956 3.044 22 H -0.262 1.262 23 H -0.280 1.280 24 H -0.243 1.243 25 C -0.110 4.110 26 C -0.121 4.121 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.037 0.963 44 H 0.035 0.965 45 H 0.271 0.729 46 H 0.144 0.856 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.671 21.272 -11.453 33.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.206 4.206 4 C -0.112 4.112 5 C -0.078 4.078 6 C -0.150 4.150 7 C -0.118 4.118 8 C -0.094 4.094 9 C -0.054 4.054 10 H 0.157 0.843 11 C -0.194 4.194 12 C 0.299 3.701 13 O -0.427 6.427 14 O -0.274 6.274 15 C 0.020 3.980 16 C -0.040 4.040 17 C -0.582 4.582 18 H 0.051 0.949 19 C -0.188 4.188 20 N -0.584 5.584 21 Si 0.778 3.222 22 H -0.187 1.187 23 H -0.206 1.206 24 H -0.166 1.166 25 C -0.128 4.128 26 C -0.138 4.138 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.145 0.855 37 H 0.123 0.877 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.080 0.920 46 H 0.162 0.838 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -22.753 20.910 -11.232 32.880 hybrid contribution 0.740 -0.837 0.299 1.157 sum -22.013 20.073 -10.932 31.734 Atomic orbital electron populations 1.21835 0.94230 1.01986 1.02254 1.21049 0.96080 0.96529 0.97062 1.21911 1.01188 0.95498 1.02042 1.20721 0.89616 1.01658 0.99179 1.20110 0.96726 0.93946 0.97050 1.21151 0.94215 0.98720 1.00903 1.20963 0.94327 0.97576 0.98970 1.19402 0.92861 0.96358 1.00817 1.20093 0.93233 0.93475 0.98599 0.84297 1.21800 1.02640 1.03940 0.91023 1.24455 0.80271 0.87812 0.77544 1.90650 1.54442 1.52110 1.45451 1.86466 1.27184 1.44248 1.69476 1.22917 0.97534 0.82880 0.94658 1.19458 0.90398 0.96173 0.97947 1.21120 0.93431 1.08084 1.35566 0.94895 1.25986 1.01416 0.96389 0.94962 1.70046 1.19401 1.25725 1.43185 0.85579 0.77634 0.78726 0.80290 1.18722 1.20568 1.16596 1.21273 0.95673 0.97596 0.98271 1.21232 0.93093 0.99302 1.00205 0.92151 0.92228 0.92606 0.91983 0.92051 0.92843 0.92548 0.90115 0.90955 0.85469 0.87735 0.92745 0.88477 0.90545 0.92801 0.92777 0.94500 0.94633 0.92035 0.83796 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.19 71.98 0.66 -0.73 16 2 C -0.09 -1.05 2.91 -10.79 -0.03 -1.08 16 3 C -0.15 -1.64 8.76 71.98 0.63 -1.01 16 4 C -0.07 -1.01 4.84 29.85 0.14 -0.87 16 5 C -0.08 -1.44 4.71 -19.87 -0.09 -1.53 16 6 C -0.13 -2.87 9.70 22.27 0.22 -2.66 16 7 C -0.10 -2.52 7.93 22.27 0.18 -2.34 16 8 C -0.09 -2.19 4.40 -19.87 -0.09 -2.28 16 9 C -0.04 -0.81 3.01 -12.29 -0.04 -0.85 16 10 H 0.14 2.46 7.88 -2.39 -0.02 2.44 16 11 C -0.14 -2.58 8.94 71.98 0.64 -1.94 16 12 C 0.46 15.26 7.12 71.24 0.51 15.76 16 13 O -0.54 -21.55 14.86 21.97 0.33 -21.23 16 14 O -0.36 -13.28 10.12 -51.36 -0.52 -13.80 16 15 C 0.09 4.10 5.40 71.98 0.39 4.49 16 16 C 0.00 -0.11 4.42 29.85 0.13 0.02 16 17 C -0.54 -31.88 9.66 25.60 0.25 -31.63 16 18 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 19 C 0.01 0.61 5.47 84.65 0.46 1.07 16 20 N -0.94 -59.04 13.96 21.45 0.30 -58.74 16 21 Si 0.96 43.45 27.47 68.60 1.88 45.33 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 25 C -0.11 -2.11 9.67 22.27 0.22 -1.89 16 26 C -0.12 -2.09 7.96 22.27 0.18 -1.91 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.68 6.26 -2.39 -0.01 0.67 16 33 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 35 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 36 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.10 2.81 7.52 -2.91 -0.02 2.79 16 38 H 0.05 1.11 7.39 -2.39 -0.02 1.09 16 39 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.46 8.11 -2.39 -0.02 1.44 16 41 H 0.05 2.44 8.13 -2.38 -0.02 2.42 16 42 H 0.05 2.45 8.13 -2.39 -0.02 2.43 16 43 H 0.04 1.71 7.20 -2.39 -0.02 1.69 16 44 H 0.04 1.62 7.57 -2.39 -0.02 1.61 16 45 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 46 H 0.14 2.02 7.95 -2.91 -0.02 2.00 16 47 H 0.14 1.78 8.04 -2.91 -0.02 1.76 16 Total: -1.00 -70.56 382.98 7.21 -63.35 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.86 Total: 14.45 kcal Atomic # 6 Polarization: -33.72 SS G_CDS: 4.36 Total: -29.36 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.30 Total: -58.74 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.19 Total: -35.02 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.33 kcal Total: -70.56 7.21 -63.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758857504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.993 kcal (2) G-P(sol) polarization free energy of solvation -70.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds