Wall clock time and date at job start Tue Mar 31 2020 08:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46686 * 2 1 4 4 C 1.50706 * 109.47166 * 119.99671 * 2 1 3 5 5 O 1.21279 * 120.00005 * 34.89529 * 4 2 1 6 6 N 1.34772 * 119.99938 * 214.88823 * 4 2 1 7 7 C 1.46930 * 120.63288 * 354.53159 * 6 4 2 8 8 C 1.53196 * 108.77698 * 233.62857 * 7 6 4 9 9 C 1.53037 * 109.31293 * 305.36576 * 8 7 6 10 10 C 1.53043 * 109.53843 * 61.36296 * 9 8 7 11 11 H 1.09005 * 109.49697 * 58.58656 * 10 9 8 12 12 N 1.46497 * 109.49776 * 178.67971 * 10 9 8 13 13 C 1.46506 * 119.99766 * 60.00312 * 12 10 9 14 14 C 1.36938 * 120.00281 * 240.00066 * 12 10 9 15 15 H 1.07997 * 119.99912 * 24.91547 * 14 12 10 16 16 C 1.38815 * 120.00078 * 204.90727 * 14 12 10 17 17 N 1.31615 * 119.99819 * 5.53061 * 16 14 12 18 18 Si 1.86795 * 120.00029 * 185.52330 * 16 14 12 19 19 H 1.48500 * 109.47156 * 59.99882 * 18 16 14 20 20 H 1.48495 * 109.47089 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47086 * 300.00032 * 18 16 14 22 22 C 1.46929 * 120.62982 * 174.55682 * 6 4 2 23 23 C 1.52998 * 109.47260 * 239.99989 * 2 1 3 24 24 C 1.53001 * 109.46986 * 64.99973 * 23 2 1 25 25 F 1.39899 * 109.46909 * 184.99762 * 23 2 1 26 26 F 1.39898 * 109.46949 * 304.99748 * 23 2 1 27 27 H 1.09000 * 109.46585 * 184.84539 * 1 2 3 28 28 H 1.09000 * 109.47003 * 304.84338 * 1 2 3 29 29 H 1.08993 * 109.47208 * 64.84670 * 1 2 3 30 30 H 1.09003 * 109.58261 * 113.84189 * 7 6 4 31 31 H 1.09000 * 109.58555 * 353.42124 * 7 6 4 32 32 H 1.08997 * 109.49517 * 185.41052 * 8 7 6 33 33 H 1.09005 * 109.52064 * 65.33178 * 8 7 6 34 34 H 1.08998 * 109.45975 * 181.38383 * 9 8 7 35 35 H 1.09003 * 109.46234 * 301.34237 * 9 8 7 36 36 H 1.08997 * 109.47026 * 95.02646 * 13 12 10 37 37 H 1.08998 * 109.46702 * 215.02329 * 13 12 10 38 38 H 1.08996 * 109.47057 * 335.02295 * 13 12 10 39 39 H 0.96998 * 120.00239 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.58414 * 246.15770 * 22 6 4 41 41 H 1.08994 * 109.58725 * 6.58159 * 22 6 4 42 42 H 1.09000 * 109.47126 * 59.99889 * 24 23 2 43 43 H 1.09001 * 109.47016 * 180.02562 * 24 23 2 44 44 H 1.08999 * 109.47212 * 299.99858 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.4223 -1.6601 1.6740 6 7 3.1596 -0.2903 1.8381 7 6 3.9741 0.7805 1.2473 8 6 5.4172 0.2846 1.1118 9 6 5.9144 -0.2045 2.4740 10 6 5.0450 -1.3717 2.9473 11 1 5.0854 -2.1765 2.2132 12 7 5.5411 -1.8596 4.2364 13 6 5.5852 -0.9603 5.3922 14 6 5.9635 -3.1562 4.3613 15 1 6.3148 -3.6955 3.4941 16 6 5.9404 -3.7773 5.6025 17 7 5.4122 -3.1595 6.6377 18 14 6.6588 -5.4898 5.8036 19 1 8.0984 -5.4685 5.4398 20 1 6.5108 -5.9260 7.2153 21 1 5.9378 -6.4365 4.9152 22 6 3.5977 -0.8947 3.1036 23 6 2.0400 -0.7212 -1.2492 24 6 1.6352 0.0690 -2.4953 25 9 3.4343 -0.8215 -1.1931 26 9 1.4822 -2.0029 -1.3081 27 1 -0.3632 -1.0240 0.0868 28 1 -0.3633 0.5871 0.8434 29 1 -0.3633 0.4368 -0.9301 30 1 3.9484 1.6579 1.8935 31 1 3.5819 1.0372 0.2633 32 1 6.0511 1.1005 0.7645 33 1 5.4546 -0.5357 0.3948 34 1 6.9493 -0.5351 2.3855 35 1 5.8540 0.6096 3.1963 36 1 4.6807 -1.0883 5.9868 37 1 6.4573 -1.1953 6.0022 38 1 5.6503 0.0716 5.0473 39 1 5.3963 -3.5933 7.5052 40 1 3.5414 -0.1538 3.9012 41 1 2.9573 -1.7431 3.3444 42 1 2.0698 1.0675 -2.4493 43 1 1.9982 -0.4451 -3.3853 44 1 0.5489 0.1471 -2.5390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027579708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:00 Heat of formation + Delta-G solvation = -113.147593 kcal Electronic energy + Delta-G solvation = -27236.345077 eV Core-core repulsion = 23246.234182 eV Total energy + Delta-G solvation = -3990.110895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.07967 -47.04757 -40.03201 -37.54105 -35.09773 -34.72055 -32.27668 -31.24366 -30.07884 -28.75776 -26.12042 -25.94641 -24.64341 -23.48359 -21.87750 -21.51721 -19.44878 -18.66654 -17.83351 -17.35676 -16.82297 -16.70785 -16.21681 -15.31576 -15.06202 -14.48737 -14.22863 -14.03095 -13.85501 -13.67483 -13.55877 -13.33147 -13.12970 -13.01548 -12.94859 -12.68850 -12.55837 -12.37766 -12.28551 -12.03341 -11.87035 -11.65857 -11.14340 -10.97352 -10.89961 -10.74003 -10.55161 -10.34469 -10.31419 -10.16022 -9.83714 -9.71290 -9.51211 -8.53850 -8.29488 -6.69374 -5.68008 -3.16803 2.59074 3.11445 3.43679 3.47863 3.49286 3.59947 3.86246 4.10956 4.15851 4.52612 4.63381 4.70099 4.80928 5.02032 5.14617 5.19441 5.30404 5.35035 5.38234 5.45791 5.48974 5.56430 5.61254 5.61592 5.80328 5.94866 6.00250 6.04574 6.19767 6.27893 6.43995 6.53090 6.70890 6.81757 6.97088 7.03369 7.44803 7.64538 7.78602 7.85828 8.34002 8.46053 9.28981 9.89920 10.39307 11.36287 Molecular weight = 304.17amu Principal moments of inertia in cm(-1) A = 0.020853 B = 0.004186 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.406931 B = 6687.631715 C = 6976.464656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.158 4.158 3 H 0.117 0.883 4 C 0.512 3.488 5 O -0.525 6.525 6 N -0.600 5.600 7 C 0.107 3.893 8 C -0.130 4.130 9 C -0.133 4.133 10 C 0.169 3.831 11 H 0.064 0.936 12 N -0.593 5.593 13 C 0.164 3.836 14 C -0.255 4.255 15 H 0.067 0.933 16 C 0.005 3.995 17 N -0.909 5.909 18 Si 0.906 3.094 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.099 3.901 23 C 0.298 3.702 24 C -0.194 4.194 25 F -0.194 7.194 26 F -0.189 7.189 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.029 0.971 37 H 0.045 0.955 38 H -0.004 1.004 39 H 0.253 0.747 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.780 13.463 -17.145 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.180 4.180 3 H 0.135 0.865 4 C 0.298 3.702 5 O -0.400 6.400 6 N -0.333 5.333 7 C -0.016 4.016 8 C -0.168 4.168 9 C -0.172 4.172 10 C 0.060 3.940 11 H 0.083 0.917 12 N -0.315 5.315 13 C 0.019 3.981 14 C -0.385 4.385 15 H 0.085 0.915 16 C -0.193 4.193 17 N -0.554 5.554 18 Si 0.736 3.264 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.209 1.209 22 C -0.025 4.025 23 C 0.261 3.739 24 C -0.251 4.251 25 F -0.174 7.174 26 F -0.170 7.170 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.015 0.985 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.076 12.832 -16.659 22.187 hybrid contribution 0.542 -0.950 0.267 1.125 sum -6.535 11.882 -16.392 21.274 Atomic orbital electron populations 1.21723 0.90316 1.04824 1.02765 1.22496 1.00595 1.01811 0.93079 0.86494 1.20047 0.81122 0.84307 0.84724 1.90728 1.57221 1.26950 1.65143 1.48271 1.23094 1.37361 1.24584 1.21778 0.92005 0.89806 0.97970 1.21882 0.94655 1.01198 0.99104 1.22086 1.00640 0.99626 0.94895 1.20627 0.89421 0.94285 0.89705 0.91730 1.43909 1.72739 1.09352 1.05469 1.20808 1.01048 0.87716 0.88486 1.19185 1.36077 0.88635 0.94581 0.91515 1.25111 0.99581 0.97890 0.96714 1.70035 1.47827 1.37366 1.00178 0.86308 0.78852 0.84430 0.76782 1.21050 1.21595 1.20876 1.22566 0.98767 0.98441 0.82698 1.20855 0.75102 0.81113 0.96809 1.22828 1.04761 1.01528 0.96015 1.93054 1.30496 1.96452 1.97443 1.93065 1.84879 1.41698 1.97361 0.90125 0.91008 0.91176 0.91525 0.90609 0.91316 0.91325 0.91702 0.92304 0.95292 0.93671 0.98515 0.93688 0.91954 0.89073 0.89107 0.89657 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.56 37.16 0.32 -1.03 16 2 C -0.16 -1.77 1.72 -91.77 -0.16 -1.93 16 3 H 0.12 0.94 6.19 -51.93 -0.32 0.62 16 4 C 0.51 8.53 6.16 -10.98 -0.07 8.46 16 5 O -0.52 -11.08 15.59 5.56 0.09 -10.99 16 6 N -0.60 -9.79 2.97 -172.76 -0.51 -10.30 16 7 C 0.11 1.32 5.56 -3.71 -0.02 1.29 16 8 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16 9 C -0.13 -2.26 5.13 -26.69 -0.14 -2.40 16 10 C 0.17 3.59 2.74 -67.81 -0.19 3.40 16 11 H 0.06 1.49 7.88 -51.93 -0.41 1.08 16 12 N -0.59 -15.11 2.82 -173.35 -0.49 -15.59 16 13 C 0.16 4.05 7.88 59.85 0.47 4.52 16 14 C -0.26 -7.21 9.59 -15.06 -0.14 -7.35 16 15 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 16 C 0.01 0.15 5.24 -17.43 -0.09 0.06 16 17 N -0.91 -26.93 10.44 55.49 0.58 -26.35 16 18 Si 0.91 22.51 29.56 -169.99 -5.02 17.48 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 C 0.10 1.98 5.80 -3.71 -0.02 1.96 16 23 C 0.30 3.39 1.76 -26.73 -0.05 3.34 16 24 C -0.19 -1.27 9.14 37.16 0.34 -0.93 16 25 F -0.19 -2.55 14.80 2.25 0.03 -2.52 16 26 F -0.19 -2.78 16.27 2.25 0.04 -2.74 16 27 H 0.08 0.98 7.38 -51.93 -0.38 0.60 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.44 6.35 -51.93 -0.33 0.11 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.73 4.75 -51.93 -0.25 0.48 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.99 7.79 -51.93 -0.40 0.59 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.98 6.72 -51.93 -0.35 0.63 16 36 H 0.03 0.78 7.35 -51.93 -0.38 0.39 16 37 H 0.04 1.20 7.26 -51.93 -0.38 0.83 16 38 H 0.00 -0.08 6.46 -51.93 -0.34 -0.41 16 39 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.06 1.24 7.51 -51.93 -0.39 0.84 16 41 H 0.09 2.17 7.00 -51.93 -0.36 1.80 16 42 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.47 6.46 -51.93 -0.34 0.13 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -33.75 343.20 -6.73 -40.48 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.71 Total: -2.15 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 0.10 Total: 7.52 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.42 Total: -52.24 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.07 Total: -5.26 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.75 -6.73 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027579708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.670 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds