Wall clock time and date at job start Tue Mar 31 2020 08:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46686 * 2 1 4 4 C 1.50706 * 109.47166 * 119.99671 * 2 1 3 5 5 O 1.21279 * 120.00005 * 34.89529 * 4 2 1 6 6 N 1.34772 * 119.99938 * 214.88823 * 4 2 1 7 7 C 1.46930 * 120.63288 * 354.53159 * 6 4 2 8 8 C 1.53196 * 108.77698 * 233.62857 * 7 6 4 9 9 C 1.53037 * 109.31293 * 305.36576 * 8 7 6 10 10 C 1.53043 * 109.53843 * 61.36296 * 9 8 7 11 11 H 1.09005 * 109.49697 * 58.58656 * 10 9 8 12 12 N 1.46497 * 109.49776 * 178.67971 * 10 9 8 13 13 C 1.46506 * 119.99766 * 60.00312 * 12 10 9 14 14 C 1.36938 * 120.00281 * 240.00066 * 12 10 9 15 15 H 1.07997 * 119.99912 * 24.91547 * 14 12 10 16 16 C 1.38815 * 120.00078 * 204.90727 * 14 12 10 17 17 N 1.31615 * 119.99819 * 5.53061 * 16 14 12 18 18 Si 1.86795 * 120.00029 * 185.52330 * 16 14 12 19 19 H 1.48500 * 109.47156 * 59.99882 * 18 16 14 20 20 H 1.48495 * 109.47089 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47086 * 300.00032 * 18 16 14 22 22 C 1.46929 * 120.62982 * 174.55682 * 6 4 2 23 23 C 1.52998 * 109.47260 * 239.99989 * 2 1 3 24 24 C 1.53001 * 109.46986 * 64.99973 * 23 2 1 25 25 F 1.39899 * 109.46909 * 184.99762 * 23 2 1 26 26 F 1.39898 * 109.46949 * 304.99748 * 23 2 1 27 27 H 1.09000 * 109.46585 * 184.84539 * 1 2 3 28 28 H 1.09000 * 109.47003 * 304.84338 * 1 2 3 29 29 H 1.08993 * 109.47208 * 64.84670 * 1 2 3 30 30 H 1.09003 * 109.58261 * 113.84189 * 7 6 4 31 31 H 1.09000 * 109.58555 * 353.42124 * 7 6 4 32 32 H 1.08997 * 109.49517 * 185.41052 * 8 7 6 33 33 H 1.09005 * 109.52064 * 65.33178 * 8 7 6 34 34 H 1.08998 * 109.45975 * 181.38383 * 9 8 7 35 35 H 1.09003 * 109.46234 * 301.34237 * 9 8 7 36 36 H 1.08997 * 109.47026 * 95.02646 * 13 12 10 37 37 H 1.08998 * 109.46702 * 215.02329 * 13 12 10 38 38 H 1.08996 * 109.47057 * 335.02295 * 13 12 10 39 39 H 0.96998 * 120.00239 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.58414 * 246.15770 * 22 6 4 41 41 H 1.08994 * 109.58725 * 6.58159 * 22 6 4 42 42 H 1.09000 * 109.47126 * 59.99889 * 24 23 2 43 43 H 1.09001 * 109.47016 * 180.02562 * 24 23 2 44 44 H 1.08999 * 109.47212 * 299.99858 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.4223 -1.6601 1.6740 6 7 3.1596 -0.2903 1.8381 7 6 3.9741 0.7805 1.2473 8 6 5.4172 0.2846 1.1118 9 6 5.9144 -0.2045 2.4740 10 6 5.0450 -1.3717 2.9473 11 1 5.0854 -2.1765 2.2132 12 7 5.5411 -1.8596 4.2364 13 6 5.5852 -0.9603 5.3922 14 6 5.9635 -3.1562 4.3613 15 1 6.3148 -3.6955 3.4941 16 6 5.9404 -3.7773 5.6025 17 7 5.4122 -3.1595 6.6377 18 14 6.6588 -5.4898 5.8036 19 1 8.0984 -5.4685 5.4398 20 1 6.5108 -5.9260 7.2153 21 1 5.9378 -6.4365 4.9152 22 6 3.5977 -0.8947 3.1036 23 6 2.0400 -0.7212 -1.2492 24 6 1.6352 0.0690 -2.4953 25 9 3.4343 -0.8215 -1.1931 26 9 1.4822 -2.0029 -1.3081 27 1 -0.3632 -1.0240 0.0868 28 1 -0.3633 0.5871 0.8434 29 1 -0.3633 0.4368 -0.9301 30 1 3.9484 1.6579 1.8935 31 1 3.5819 1.0372 0.2633 32 1 6.0511 1.1005 0.7645 33 1 5.4546 -0.5357 0.3948 34 1 6.9493 -0.5351 2.3855 35 1 5.8540 0.6096 3.1963 36 1 4.6807 -1.0883 5.9868 37 1 6.4573 -1.1953 6.0022 38 1 5.6503 0.0716 5.0473 39 1 5.3963 -3.5933 7.5052 40 1 3.5414 -0.1538 3.9012 41 1 2.9573 -1.7431 3.3444 42 1 2.0698 1.0675 -2.4493 43 1 1.9982 -0.4451 -3.3853 44 1 0.5489 0.1471 -2.5390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027579708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:59 Heat of formation + Delta-G solvation = -135.191938 kcal Electronic energy + Delta-G solvation = -27237.300992 eV Core-core repulsion = 23246.234182 eV Total energy + Delta-G solvation = -3991.066810 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.170 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.01914 -48.02218 -41.36077 -39.06124 -36.81832 -35.71176 -33.93796 -32.85596 -30.96136 -30.26614 -28.08224 -27.18134 -25.81677 -25.13088 -23.11875 -22.77991 -20.89620 -19.98299 -18.97036 -18.74791 -18.36242 -17.78667 -17.30932 -17.00802 -16.52448 -15.92539 -15.73165 -15.38961 -15.15589 -14.94932 -14.89111 -14.44660 -14.41039 -14.17160 -13.98653 -13.86222 -13.73808 -13.55200 -13.43071 -13.06731 -13.00949 -12.81688 -12.76961 -12.57385 -12.45680 -12.23936 -12.17574 -12.11851 -11.90115 -11.75128 -11.57734 -11.41350 -10.83423 -10.67897 -9.73839 -8.76858 -7.86920 -5.38168 1.36082 1.41163 1.44298 1.50420 1.86889 2.46697 2.75272 3.08523 3.22410 3.26885 3.34180 3.58563 3.75354 3.97033 3.99411 4.00793 4.09260 4.21713 4.23097 4.34475 4.58160 4.62704 4.67660 4.72394 4.74819 4.77497 4.82146 4.84763 4.92683 5.02571 5.09849 5.13924 5.25859 5.27412 5.40490 5.45981 5.53809 5.59182 5.72247 6.29902 6.37382 7.05578 7.12595 7.82786 8.25459 9.15000 Molecular weight = 304.17amu Principal moments of inertia in cm(-1) A = 0.020853 B = 0.004186 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.406931 B = 6687.631715 C = 6976.464656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.147 4.147 3 H 0.162 0.838 4 C 0.499 3.501 5 O -0.585 6.585 6 N -0.601 5.601 7 C 0.101 3.899 8 C -0.122 4.122 9 C -0.122 4.122 10 C 0.167 3.833 11 H 0.034 0.966 12 N -0.611 5.611 13 C 0.183 3.817 14 C -0.270 4.270 15 H 0.062 0.938 16 C -0.048 4.048 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.283 1.283 22 C 0.114 3.886 23 C 0.282 3.718 24 C -0.184 4.184 25 F -0.207 7.207 26 F -0.217 7.217 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.069 0.931 36 H -0.001 1.001 37 H 0.018 0.982 38 H 0.035 0.965 39 H 0.249 0.751 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 16.617 -19.850 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 H 0.180 0.820 4 C 0.288 3.712 5 O -0.464 6.464 6 N -0.333 5.333 7 C -0.020 4.020 8 C -0.160 4.160 9 C -0.161 4.161 10 C 0.060 3.940 11 H 0.052 0.948 12 N -0.334 5.334 13 C 0.038 3.962 14 C -0.400 4.400 15 H 0.079 0.921 16 C -0.243 4.243 17 N -0.582 5.582 18 Si 0.797 3.203 19 H -0.198 1.198 20 H -0.215 1.215 21 H -0.209 1.209 22 C -0.011 4.011 23 C 0.245 3.755 24 C -0.241 4.241 25 F -0.188 7.188 26 F -0.199 7.199 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.132 0.868 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.017 0.983 37 H 0.037 0.963 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.141 0.859 43 H 0.106 0.894 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.848 16.035 -19.422 26.100 hybrid contribution 0.463 -1.931 1.065 2.253 sum -6.385 14.104 -18.357 24.014 Atomic orbital electron populations 1.21778 0.89176 1.03220 1.05318 1.22640 1.01487 1.03033 0.89720 0.82038 1.21179 0.80450 0.83748 0.85863 1.90702 1.58933 1.29726 1.67067 1.48361 1.23721 1.37961 1.23247 1.22187 0.90604 0.88942 1.00267 1.21867 0.96066 1.02107 0.96007 1.21921 0.98996 0.97647 0.97520 1.20757 0.90999 0.95136 0.87156 0.94795 1.44125 1.73368 1.08839 1.07025 1.20506 0.98334 0.89508 0.87845 1.19466 1.35962 0.90044 0.94553 0.92058 1.25860 1.00445 1.01497 0.96494 1.70207 1.49121 1.38639 1.00281 0.85321 0.78540 0.79978 0.76477 1.19820 1.21463 1.20920 1.21978 0.96918 0.97050 0.85145 1.21603 0.74316 0.80459 0.99110 1.22886 1.06178 1.02079 0.92980 1.93024 1.31690 1.96484 1.97639 1.93015 1.85260 1.44023 1.97568 0.93552 0.90581 0.86769 0.88741 0.86910 0.87010 0.92775 0.92702 0.91222 0.98255 0.96291 0.94629 0.94143 0.91559 0.94172 0.85851 0.89399 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.56 71.98 0.62 -1.72 16 2 C -0.15 -2.89 1.72 -11.54 -0.02 -2.91 16 3 H 0.16 1.66 6.19 -2.38 -0.01 1.65 16 4 C 0.50 16.55 6.16 87.66 0.54 17.09 16 5 O -0.58 -26.15 15.59 -3.02 -0.05 -26.20 16 6 N -0.60 -19.08 2.97 -818.90 -2.43 -21.52 16 7 C 0.10 2.05 5.56 86.36 0.48 2.53 16 8 C -0.12 -2.81 6.08 30.67 0.19 -2.63 16 9 C -0.12 -3.95 5.13 30.62 0.16 -3.79 16 10 C 0.17 7.30 2.74 45.07 0.12 7.43 16 11 H 0.03 1.65 7.88 -2.38 -0.02 1.63 16 12 N -0.61 -32.24 2.82 -702.35 -1.98 -34.22 16 13 C 0.18 9.25 7.88 127.77 1.01 10.25 16 14 C -0.27 -15.86 9.59 84.03 0.81 -15.06 16 15 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 16 C -0.05 -2.81 5.24 84.86 0.44 -2.37 16 17 N -0.94 -57.56 10.44 21.65 0.23 -57.33 16 18 Si 0.97 47.58 29.56 68.60 2.03 49.60 16 19 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 21 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 22 C 0.11 4.74 5.80 86.36 0.50 5.24 16 23 C 0.28 5.70 1.76 30.59 0.05 5.76 16 24 C -0.18 -1.55 9.14 71.98 0.66 -0.89 16 25 F -0.21 -5.00 14.80 44.97 0.67 -4.33 16 26 F -0.22 -6.39 16.27 44.97 0.73 -5.66 16 27 H 0.05 1.12 7.38 -2.39 -0.02 1.11 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.11 0.91 6.35 -2.39 -0.02 0.90 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.11 1.51 4.75 -2.39 -0.01 1.50 16 32 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.44 7.79 -2.38 -0.02 1.42 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 2.12 6.72 -2.39 -0.02 2.11 16 36 H 0.00 -0.05 7.35 -2.39 -0.02 -0.07 16 37 H 0.02 1.02 7.26 -2.39 -0.02 1.00 16 38 H 0.04 1.49 6.46 -2.39 -0.02 1.47 16 39 H 0.25 14.88 8.31 -92.71 -0.77 14.10 16 40 H 0.07 2.67 7.51 -2.39 -0.02 2.65 16 41 H 0.04 2.06 7.00 -2.39 -0.02 2.04 16 42 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.11 0.54 6.46 -2.39 -0.02 0.53 16 Total: -1.00 -82.04 343.20 5.74 -76.30 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 1.00 Total: 4.42 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 5.55 Total: 18.94 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -4.19 Total: -113.07 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 9 Polarization: -11.39 SS G_CDS: 1.40 Total: -9.99 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.60 kcal Total: -82.04 5.74 -76.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027579708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.894 kcal (2) G-P(sol) polarization free energy of solvation -82.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds