Wall clock time and date at job start Tue Mar 31 2020 09:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00075 * 2 1 4 4 H 1.48500 * 109.47177 * 269.99467 * 3 2 1 5 5 H 1.48498 * 109.47118 * 29.99606 * 3 2 1 6 6 H 1.48495 * 109.46961 * 149.99754 * 3 2 1 7 7 C 1.38813 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00216 * 163.22659 * 7 2 1 9 9 N 1.36940 * 119.99916 * 343.23074 * 7 2 1 10 10 C 1.46937 * 120.68433 * 152.05050 * 9 7 2 11 11 C 1.53177 * 108.89717 * 125.95980 * 10 9 7 12 12 C 1.53128 * 109.29577 * 55.05798 * 11 10 9 13 13 C 1.52494 * 109.60212 * 299.49605 * 12 11 10 14 14 C 1.54154 * 110.06413 * 181.75293 * 13 12 11 15 15 C 1.55046 * 102.73300 * 97.48324 * 14 13 12 16 16 N 1.48163 * 103.31388 * 36.99107 * 15 14 13 17 17 C 1.34774 * 127.02533 * 140.99392 * 16 15 14 18 18 O 1.21281 * 119.99987 * 179.97438 * 17 16 15 19 19 C 1.50706 * 120.00126 * 359.97438 * 17 16 15 20 20 H 1.09003 * 115.54945 * 34.32941 * 19 17 16 21 21 C 1.52999 * 117.49939 * 248.61792 * 19 17 16 22 22 C 1.52989 * 59.99859 * 252.50975 * 21 19 17 23 23 C 1.53002 * 138.58761 * 130.89267 * 22 21 19 24 24 C 1.52990 * 138.58982 * 229.10202 * 22 21 19 25 25 C 1.47604 * 105.94534 * 320.97201 * 16 15 14 26 26 C 1.47036 * 120.68343 * 332.02718 * 9 7 2 27 27 H 0.96996 * 120.00038 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.56874 * 245.79125 * 10 9 7 29 29 H 1.09004 * 109.56220 * 6.13312 * 10 9 7 30 30 H 1.09005 * 109.49930 * 175.00562 * 11 10 9 31 31 H 1.09003 * 109.50277 * 295.07273 * 11 10 9 32 32 H 1.09003 * 109.44782 * 179.45671 * 12 11 10 33 33 H 1.09000 * 109.44734 * 59.53531 * 12 11 10 34 34 H 1.08997 * 110.76304 * 215.79720 * 14 13 12 35 35 H 1.09004 * 110.75292 * 339.17723 * 14 13 12 36 36 H 1.09001 * 110.65229 * 278.52862 * 15 14 13 37 37 H 1.08997 * 110.64580 * 155.44845 * 15 14 13 38 38 H 1.09004 * 117.49628 * 0.02562 * 21 19 17 39 39 H 1.08996 * 117.49758 * 145.02123 * 21 19 17 40 40 H 1.09000 * 117.49963 * 238.38212 * 23 22 21 41 41 H 1.08999 * 117.49574 * 23.40264 * 23 22 21 42 42 H 1.08999 * 117.49591 * 336.60085 * 24 22 21 43 43 H 1.09007 * 117.49921 * 121.62166 * 24 22 21 44 44 H 1.08999 * 109.97484 * 266.01160 * 25 16 15 45 45 H 1.09005 * 109.97339 * 144.73979 * 25 16 15 46 46 H 1.09005 * 109.58119 * 113.03016 * 26 9 7 47 47 H 1.08995 * 109.58260 * 352.62076 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0558 -1.2222 -0.2694 9 7 1.3692 -2.3627 0.3432 10 6 1.8164 -3.6540 -0.1969 11 6 2.0754 -4.6156 0.9668 12 6 0.8175 -4.7097 1.8350 13 6 0.4769 -3.3321 2.3931 14 6 -0.7630 -3.4225 3.3046 15 6 -0.1398 -3.5079 4.7218 16 7 1.0328 -2.6066 4.6337 17 6 1.4792 -1.7605 5.5831 18 8 2.4591 -1.0772 5.3742 19 6 0.7606 -1.6636 6.9043 20 1 0.3257 -2.5929 7.2722 21 6 0.0123 -0.3640 7.2078 22 6 1.3164 -0.6849 7.9406 23 6 2.6426 0.0005 8.2762 24 6 1.8503 -0.7122 9.3740 25 6 1.6125 -2.8250 3.2940 26 6 0.2196 -2.3424 1.2597 27 1 -0.4850 0.8400 -0.0004 28 1 1.0433 -4.0657 -0.8457 29 1 2.7356 -3.5131 -0.7657 30 1 2.3219 -5.6026 0.5753 31 1 2.9059 -4.2447 1.5675 32 1 0.9959 -5.4010 2.6587 33 1 -0.0141 -5.0724 1.2309 34 1 -1.3802 -2.5294 3.2072 35 1 -1.3413 -4.3193 3.0822 36 1 0.1749 -4.5279 4.9425 37 1 -0.8438 -3.1506 5.4733 38 1 0.0393 0.4206 6.4517 39 1 -0.9153 -0.4382 7.7754 40 1 3.5582 -0.4762 7.9261 41 1 2.6560 1.0902 8.2919 42 1 1.3426 -0.0912 10.1120 43 1 2.2447 -1.6577 9.7463 44 1 2.4056 -3.5707 3.3485 45 1 2.0084 -1.8880 2.9023 46 1 -0.6827 -2.6310 0.7204 47 1 0.0974 -1.3402 1.6703 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040419082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:41 Heat of formation + Delta-G solvation = 49.361807 kcal Electronic energy + Delta-G solvation = -26305.933039 eV Core-core repulsion = 22877.098610 eV Total energy + Delta-G solvation = -3428.834429 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.16914 -38.87011 -37.13308 -35.65548 -33.09048 -32.61725 -31.30919 -29.93719 -28.85227 -26.28318 -25.27955 -23.50013 -22.68064 -22.44422 -22.17429 -20.37335 -19.92214 -18.36938 -18.02887 -16.91362 -16.59096 -15.66638 -15.31397 -15.06083 -14.86193 -14.69143 -14.01272 -13.94544 -13.69131 -13.34182 -12.96945 -12.78693 -12.66630 -12.23585 -12.17932 -11.83961 -11.73517 -11.52576 -11.48145 -11.14851 -10.93422 -10.88328 -10.61940 -10.37923 -10.26339 -10.23418 -10.15677 -10.11016 -10.03133 -9.79611 -9.52399 -9.37845 -9.36852 -8.45068 -8.27206 -6.63745 -5.76452 -3.17824 2.73679 3.12602 3.42015 3.49511 3.54568 3.70190 3.79230 4.24685 4.53978 4.65055 4.74078 4.93104 4.94757 5.16166 5.24311 5.37482 5.43102 5.49014 5.51656 5.53646 5.55429 5.58421 5.60838 5.63002 5.67984 5.79703 5.89723 5.93945 6.04625 6.09007 6.12410 6.16915 6.23363 6.35138 6.42603 6.47274 6.49780 6.76344 6.79614 6.86920 6.91070 7.01803 7.33401 7.63988 7.83758 7.91905 8.47487 8.52382 9.24187 9.87700 10.43932 11.32247 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.012805 B = 0.005226 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.206222 B = 5356.179459 C = 6690.406879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.006 3.994 3 Si 0.897 3.103 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.145 3.855 11 C -0.139 4.139 12 C -0.093 4.093 13 C -0.094 4.094 14 C -0.124 4.124 15 C 0.101 3.899 16 N -0.616 5.616 17 C 0.554 3.446 18 O -0.534 6.534 19 C -0.135 4.135 20 H 0.120 0.880 21 C -0.100 4.100 22 C -0.202 4.202 23 C -0.113 4.113 24 C -0.131 4.131 25 C 0.127 3.873 26 C 0.189 3.811 27 H 0.253 0.747 28 H 0.017 0.983 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.091 0.909 46 H 0.020 0.980 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 -7.996 14.891 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.727 3.273 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.178 4.178 12 C -0.131 4.131 13 C -0.096 4.096 14 C -0.163 4.163 15 C -0.022 4.022 16 N -0.350 5.350 17 C 0.342 3.658 18 O -0.410 6.410 19 C -0.156 4.156 20 H 0.138 0.862 21 C -0.138 4.138 22 C -0.202 4.202 23 C -0.150 4.150 24 C -0.168 4.168 25 C 0.006 3.994 26 C 0.063 3.937 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.038 0.962 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.997 -7.399 14.814 16.679 hybrid contribution 0.262 0.654 -0.100 0.711 sum -1.735 -6.745 14.714 16.279 Atomic orbital electron populations 1.70011 1.05222 1.25432 1.54091 1.24984 0.95240 0.98282 1.00762 0.86372 0.79527 0.83861 0.77571 1.21410 1.21581 1.20336 1.19145 0.92473 0.84724 1.41688 0.91753 1.44057 1.35463 1.01564 1.50249 1.20901 0.97499 0.86950 0.92829 1.22082 0.97562 0.99010 0.99119 1.21373 0.98220 0.95234 0.98248 1.21838 0.93221 0.97582 0.96998 1.22725 0.97664 1.02588 0.93276 1.22545 0.87524 0.93552 0.98616 1.48855 1.30300 1.40066 1.15790 1.19220 0.84079 0.78806 0.83674 1.90712 1.26784 1.43443 1.80100 1.21926 1.03815 0.96178 0.93633 0.86222 1.22663 0.93651 0.96467 1.00976 1.21148 0.97773 1.04438 0.96890 1.22582 0.93502 0.99277 0.99650 1.22743 1.02300 1.02304 0.89408 1.22114 0.95267 1.02299 0.79768 1.20755 0.88689 0.97127 0.87145 0.93725 0.96538 0.92938 0.93123 0.92270 0.93554 0.92315 0.90479 0.90548 0.91500 0.90714 0.87904 0.87707 0.88215 0.88572 0.88479 0.88715 0.92641 0.89060 0.96161 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 11.19 55.49 0.62 -25.69 16 2 C 0.01 0.16 4.92 -17.43 -0.09 0.08 16 3 Si 0.90 22.62 29.59 -169.99 -5.03 17.59 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.25 -6.94 9.59 -15.06 -0.14 -7.09 16 8 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -14.60 2.76 -172.56 -0.48 -15.08 16 10 C 0.14 3.00 6.50 -3.71 -0.02 2.97 16 11 C -0.14 -2.36 5.87 -26.57 -0.16 -2.51 16 12 C -0.09 -1.47 4.40 -26.92 -0.12 -1.59 16 13 C -0.09 -1.67 0.62 -154.05 -0.09 -1.77 16 14 C -0.12 -1.79 6.15 -25.05 -0.15 -1.94 16 15 C 0.10 1.29 6.84 -2.05 -0.01 1.28 16 16 N -0.62 -10.46 3.30 -169.83 -0.56 -11.02 16 17 C 0.55 9.92 7.68 -10.98 -0.08 9.84 16 18 O -0.53 -11.80 16.59 5.56 0.09 -11.71 16 19 C -0.13 -1.81 5.26 -91.77 -0.48 -2.29 16 20 H 0.12 1.30 7.61 -51.93 -0.40 0.90 16 21 C -0.10 -1.22 10.23 -26.74 -0.27 -1.49 16 22 C -0.20 -2.58 5.05 -154.52 -0.78 -3.37 16 23 C -0.11 -1.42 10.16 -26.73 -0.27 -1.69 16 24 C -0.13 -1.30 10.53 -26.74 -0.28 -1.58 16 25 C 0.13 2.45 5.57 -3.14 -0.02 2.43 16 26 C 0.19 4.36 3.59 -3.93 -0.01 4.34 16 27 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.06 6.65 -51.93 -0.35 0.72 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.21 7.84 -51.93 -0.41 0.80 16 35 H 0.08 0.93 7.83 -51.93 -0.41 0.52 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.79 7.17 -51.93 -0.37 0.42 16 38 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.04 6.54 -51.93 -0.34 0.70 16 45 H 0.09 2.20 7.52 -51.93 -0.39 1.81 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.09 2.36 6.08 -51.93 -0.32 2.05 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -32.18 366.79 -10.83 -43.01 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -8.01 Total: 1.74 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -3.00 Total: -4.38 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.42 Total: -51.78 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.59 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.18 -10.83 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040419082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.373 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds