Wall clock time and date at job start Tue Mar 31 2020 09:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00075 * 2 1 4 4 H 1.48500 * 109.47177 * 269.99467 * 3 2 1 5 5 H 1.48498 * 109.47118 * 29.99606 * 3 2 1 6 6 H 1.48495 * 109.46961 * 149.99754 * 3 2 1 7 7 C 1.38813 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00216 * 163.22659 * 7 2 1 9 9 N 1.36940 * 119.99916 * 343.23074 * 7 2 1 10 10 C 1.46937 * 120.68433 * 152.05050 * 9 7 2 11 11 C 1.53177 * 108.89717 * 125.95980 * 10 9 7 12 12 C 1.53128 * 109.29577 * 55.05798 * 11 10 9 13 13 C 1.52494 * 109.60212 * 299.49605 * 12 11 10 14 14 C 1.54154 * 110.06413 * 181.75293 * 13 12 11 15 15 C 1.55046 * 102.73300 * 97.48324 * 14 13 12 16 16 N 1.48163 * 103.31388 * 36.99107 * 15 14 13 17 17 C 1.34774 * 127.02533 * 140.99392 * 16 15 14 18 18 O 1.21281 * 119.99987 * 179.97438 * 17 16 15 19 19 C 1.50706 * 120.00126 * 359.97438 * 17 16 15 20 20 H 1.09003 * 115.54945 * 34.32941 * 19 17 16 21 21 C 1.52999 * 117.49939 * 248.61792 * 19 17 16 22 22 C 1.52989 * 59.99859 * 252.50975 * 21 19 17 23 23 C 1.53002 * 138.58761 * 130.89267 * 22 21 19 24 24 C 1.52990 * 138.58982 * 229.10202 * 22 21 19 25 25 C 1.47604 * 105.94534 * 320.97201 * 16 15 14 26 26 C 1.47036 * 120.68343 * 332.02718 * 9 7 2 27 27 H 0.96996 * 120.00038 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.56874 * 245.79125 * 10 9 7 29 29 H 1.09004 * 109.56220 * 6.13312 * 10 9 7 30 30 H 1.09005 * 109.49930 * 175.00562 * 11 10 9 31 31 H 1.09003 * 109.50277 * 295.07273 * 11 10 9 32 32 H 1.09003 * 109.44782 * 179.45671 * 12 11 10 33 33 H 1.09000 * 109.44734 * 59.53531 * 12 11 10 34 34 H 1.08997 * 110.76304 * 215.79720 * 14 13 12 35 35 H 1.09004 * 110.75292 * 339.17723 * 14 13 12 36 36 H 1.09001 * 110.65229 * 278.52862 * 15 14 13 37 37 H 1.08997 * 110.64580 * 155.44845 * 15 14 13 38 38 H 1.09004 * 117.49628 * 0.02562 * 21 19 17 39 39 H 1.08996 * 117.49758 * 145.02123 * 21 19 17 40 40 H 1.09000 * 117.49963 * 238.38212 * 23 22 21 41 41 H 1.08999 * 117.49574 * 23.40264 * 23 22 21 42 42 H 1.08999 * 117.49591 * 336.60085 * 24 22 21 43 43 H 1.09007 * 117.49921 * 121.62166 * 24 22 21 44 44 H 1.08999 * 109.97484 * 266.01160 * 25 16 15 45 45 H 1.09005 * 109.97339 * 144.73979 * 25 16 15 46 46 H 1.09005 * 109.58119 * 113.03016 * 26 9 7 47 47 H 1.08995 * 109.58260 * 352.62076 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0558 -1.2222 -0.2694 9 7 1.3692 -2.3627 0.3432 10 6 1.8164 -3.6540 -0.1969 11 6 2.0754 -4.6156 0.9668 12 6 0.8175 -4.7097 1.8350 13 6 0.4769 -3.3321 2.3931 14 6 -0.7630 -3.4225 3.3046 15 6 -0.1398 -3.5079 4.7218 16 7 1.0328 -2.6066 4.6337 17 6 1.4792 -1.7605 5.5831 18 8 2.4591 -1.0772 5.3742 19 6 0.7606 -1.6636 6.9043 20 1 0.3257 -2.5929 7.2722 21 6 0.0123 -0.3640 7.2078 22 6 1.3164 -0.6849 7.9406 23 6 2.6426 0.0005 8.2762 24 6 1.8503 -0.7122 9.3740 25 6 1.6125 -2.8250 3.2940 26 6 0.2196 -2.3424 1.2597 27 1 -0.4850 0.8400 -0.0004 28 1 1.0433 -4.0657 -0.8457 29 1 2.7356 -3.5131 -0.7657 30 1 2.3219 -5.6026 0.5753 31 1 2.9059 -4.2447 1.5675 32 1 0.9959 -5.4010 2.6587 33 1 -0.0141 -5.0724 1.2309 34 1 -1.3802 -2.5294 3.2072 35 1 -1.3413 -4.3193 3.0822 36 1 0.1749 -4.5279 4.9425 37 1 -0.8438 -3.1506 5.4733 38 1 0.0393 0.4206 6.4517 39 1 -0.9153 -0.4382 7.7754 40 1 3.5582 -0.4762 7.9261 41 1 2.6560 1.0902 8.2919 42 1 1.3426 -0.0912 10.1120 43 1 2.2447 -1.6577 9.7463 44 1 2.4056 -3.5707 3.3485 45 1 2.0084 -1.8880 2.9023 46 1 -0.6827 -2.6310 0.7204 47 1 0.0974 -1.3402 1.6703 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040419082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:40 Heat of formation + Delta-G solvation = 30.717497 kcal Electronic energy + Delta-G solvation = -26306.741517 eV Core-core repulsion = 22877.098610 eV Total energy + Delta-G solvation = -3429.642907 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52302 -40.18070 -38.34318 -37.23760 -34.89197 -33.69487 -32.81551 -31.76404 -30.17919 -27.82785 -27.16779 -24.82039 -23.98108 -23.80243 -23.30299 -21.95169 -20.97088 -19.73297 -19.40439 -18.55822 -18.20142 -16.97549 -16.82853 -16.53502 -15.92006 -15.88932 -15.76389 -15.37204 -15.18924 -14.98522 -14.51214 -14.40654 -13.95063 -13.68608 -13.53062 -13.16597 -13.08427 -12.86424 -12.84088 -12.67698 -12.60907 -12.38294 -12.26824 -12.25259 -11.90648 -11.86140 -11.42680 -11.20712 -11.11999 -11.04371 -11.02823 -10.91740 -10.74339 -10.57257 -9.67337 -8.67895 -7.93030 -5.35150 1.33604 1.37784 1.45247 1.45982 1.90122 2.43536 2.71664 2.80610 3.21897 3.31046 3.48885 3.66182 3.77327 3.82266 3.87494 3.97517 4.07524 4.27892 4.31557 4.40000 4.45881 4.47634 4.55297 4.63223 4.69933 4.72635 4.75360 4.77363 4.78699 4.93855 4.94273 4.99289 4.99392 5.00494 5.11543 5.15774 5.16101 5.22738 5.25255 5.37693 5.44144 5.49727 5.55882 5.66791 5.75805 6.35245 6.61553 7.12067 7.16343 7.85290 8.34173 9.12366 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.012805 B = 0.005226 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.206222 B = 5356.179459 C = 6690.406879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.043 4.043 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.284 1.284 7 C -0.257 4.257 8 H 0.058 0.942 9 N -0.610 5.610 10 C 0.138 3.862 11 C -0.130 4.130 12 C -0.087 4.087 13 C -0.087 4.087 14 C -0.119 4.119 15 C 0.104 3.896 16 N -0.620 5.620 17 C 0.540 3.460 18 O -0.594 6.594 19 C -0.135 4.135 20 H 0.158 0.842 21 C -0.092 4.092 22 C -0.226 4.226 23 C -0.143 4.143 24 C -0.090 4.090 25 C 0.136 3.864 26 C 0.201 3.799 27 H 0.248 0.752 28 H 0.020 0.980 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.144 0.856 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.110 0.890 44 H 0.061 0.939 45 H 0.027 0.973 46 H 0.001 0.999 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 -10.985 17.574 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.238 4.238 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.075 0.925 9 N -0.333 5.333 10 C 0.013 3.987 11 C -0.169 4.169 12 C -0.125 4.125 13 C -0.089 4.089 14 C -0.157 4.157 15 C -0.017 4.017 16 N -0.352 5.352 17 C 0.331 3.669 18 O -0.475 6.475 19 C -0.155 4.155 20 H 0.176 0.824 21 C -0.129 4.129 22 C -0.227 4.227 23 C -0.180 4.180 24 C -0.126 4.126 25 C 0.013 3.987 26 C 0.075 3.925 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.162 0.838 40 H 0.095 0.905 41 H 0.114 0.886 42 H 0.141 0.859 43 H 0.128 0.872 44 H 0.080 0.920 45 H 0.045 0.955 46 H 0.019 0.981 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.454 -10.439 17.493 20.662 hybrid contribution 0.780 1.593 -1.016 2.044 sum -2.674 -8.847 16.477 18.892 Atomic orbital electron populations 1.70131 1.06141 1.25468 1.55683 1.25561 0.95956 1.00697 1.01626 0.85564 0.78036 0.80897 0.77818 1.20122 1.22008 1.20944 1.19382 0.92450 0.86374 1.40513 0.92477 1.44312 1.35641 1.02187 1.51174 1.21095 0.97011 0.86035 0.94584 1.21977 0.97969 0.99387 0.97520 1.21380 0.97768 0.94014 0.99299 1.21651 0.94607 0.97366 0.95293 1.22737 0.96061 1.03450 0.93497 1.22862 0.86240 0.94437 0.98182 1.49026 1.31256 1.40474 1.14477 1.20211 0.83670 0.77783 0.85279 1.90676 1.29614 1.45698 1.81495 1.21957 1.04178 0.98258 0.91137 0.82434 1.22731 0.95090 0.94712 1.00354 1.21446 0.97820 1.04374 0.99013 1.22600 0.93128 0.99503 1.02753 1.22865 0.99289 1.02485 0.87984 1.21801 0.96128 0.99163 0.81606 1.20485 0.87515 0.96284 0.88230 0.94257 0.96246 0.93670 0.89466 0.93612 0.89706 0.91067 0.92539 0.86857 0.88073 0.87559 0.90791 0.83805 0.90453 0.88596 0.85902 0.87180 0.92039 0.95475 0.98074 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 11.19 21.65 0.24 -56.67 16 2 C -0.04 -2.53 4.92 84.86 0.42 -2.11 16 3 Si 0.95 48.86 29.59 68.60 2.03 50.89 16 4 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.29 -15.20 7.11 99.48 0.71 -14.49 16 6 H -0.28 -14.71 7.11 99.48 0.71 -14.00 16 7 C -0.26 -14.96 9.59 84.03 0.81 -14.16 16 8 H 0.06 3.32 7.88 -2.91 -0.02 3.30 16 9 N -0.61 -31.37 2.76 -699.86 -1.93 -33.30 16 10 C 0.14 5.74 6.50 86.36 0.56 6.30 16 11 C -0.13 -4.14 5.87 30.70 0.18 -3.96 16 12 C -0.09 -2.46 4.40 30.47 0.13 -2.32 16 13 C -0.09 -3.03 0.62 -51.88 -0.03 -3.06 16 14 C -0.12 -3.12 6.15 31.69 0.19 -2.93 16 15 C 0.10 2.25 6.84 86.76 0.59 2.84 16 16 N -0.62 -20.61 3.30 -809.61 -2.67 -23.28 16 17 C 0.54 19.54 7.68 87.66 0.67 20.22 16 18 O -0.59 -27.95 16.59 -3.03 -0.05 -28.00 16 19 C -0.13 -3.34 5.26 -11.54 -0.06 -3.40 16 20 H 0.16 2.66 7.61 -2.39 -0.02 2.64 16 21 C -0.09 -2.07 10.23 30.59 0.31 -1.75 16 22 C -0.23 -5.42 5.05 -52.19 -0.26 -5.69 16 23 C -0.14 -3.59 10.16 30.59 0.31 -3.28 16 24 C -0.09 -1.51 10.53 30.59 0.32 -1.19 16 25 C 0.14 5.34 5.57 86.36 0.48 5.82 16 26 C 0.20 9.63 3.59 86.16 0.31 9.94 16 27 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.04 1.89 7.93 -2.38 -0.02 1.87 16 30 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.05 1.59 6.65 -2.39 -0.02 1.57 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.72 7.84 -2.39 -0.02 1.71 16 35 H 0.11 2.19 7.83 -2.39 -0.02 2.17 16 36 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.11 1.70 7.17 -2.39 -0.02 1.69 16 38 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.06 2.30 6.54 -2.39 -0.02 2.29 16 45 H 0.03 1.40 7.52 -2.38 -0.02 1.38 16 46 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 47 H 0.04 2.35 6.08 -2.39 -0.01 2.34 16 Total: -1.00 -78.95 366.79 3.50 -75.45 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.94 Total: 13.64 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 4.94 Total: 1.27 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -4.36 Total: -113.25 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.05 Total: -28.00 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.03 Total: 50.89 kcal Total: -78.95 3.50 -75.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040419082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.172 kcal (2) G-P(sol) polarization free energy of solvation -78.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds