Wall clock time and date at job start Tue Mar 31 2020 08:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 120.00279 * 2 1 4 4 H 1.48499 * 109.47257 * 274.98838 * 3 2 1 5 5 H 1.48504 * 109.47049 * 34.98861 * 3 2 1 6 6 H 1.48501 * 109.47330 * 154.98727 * 3 2 1 7 7 C 1.38816 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00485 * 173.10890 * 7 2 1 9 9 N 1.36942 * 119.99924 * 353.11498 * 7 2 1 10 10 C 1.47168 * 125.59116 * 5.99389 * 9 7 2 11 11 C 1.54666 * 107.34811 * 179.12387 * 10 9 7 12 12 C 1.53308 * 102.71674 * 339.49515 * 11 10 9 13 13 C 1.53301 * 112.22144 * 155.00512 * 12 11 10 14 14 C 1.54662 * 102.72202 * 88.17229 * 13 12 11 15 15 N 1.47172 * 107.34683 * 20.50858 * 14 13 12 16 16 C 1.34772 * 125.59242 * 180.88756 * 15 14 13 17 17 O 1.21279 * 120.00411 * 185.60072 * 16 15 14 18 18 C 1.50706 * 119.99960 * 5.59892 * 16 15 14 19 19 C 1.53004 * 115.55078 * 81.60759 * 18 16 15 20 20 C 1.52998 * 117.49387 * 325.70762 * 19 18 16 21 21 C 1.52998 * 60.00166 * 107.49040 * 20 19 18 22 22 C 1.52996 * 117.51603 * 227.30627 * 18 16 15 23 23 C 1.52998 * 60.00075 * 107.47831 * 22 18 16 24 24 C 1.47782 * 108.81287 * 1.14593 * 15 14 13 25 25 C 1.47789 * 125.59541 * 186.02551 * 9 7 2 26 26 H 0.97002 * 119.99996 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.87001 * 59.68724 * 10 9 7 28 28 H 1.09005 * 109.98585 * 298.62516 * 10 9 7 29 29 H 1.08993 * 110.76300 * 221.18531 * 11 10 9 30 30 H 1.09002 * 110.92242 * 97.87187 * 11 10 9 31 31 H 1.09001 * 110.76328 * 329.86357 * 13 12 11 32 32 H 1.09007 * 110.92266 * 206.55318 * 13 12 11 33 33 H 1.09000 * 109.86764 * 261.07000 * 14 13 12 34 34 H 1.08991 * 109.98623 * 140.01558 * 14 13 12 35 35 H 1.08993 * 115.55745 * 180.02562 * 19 18 16 36 36 H 1.09007 * 117.49416 * 214.97761 * 20 19 18 37 37 H 1.08999 * 117.50343 * 0.02562 * 20 19 18 38 38 H 1.09006 * 117.49834 * 252.51046 * 21 20 19 39 39 H 1.09001 * 117.50198 * 107.48387 * 21 20 19 40 40 H 1.08999 * 117.49876 * 214.96864 * 22 18 16 41 41 H 1.09005 * 117.50397 * 359.97438 * 22 18 16 42 42 H 1.08994 * 117.50059 * 252.50627 * 23 22 18 43 43 H 1.09006 * 117.49834 * 107.48357 * 23 22 18 44 44 H 1.09008 * 110.39925 * 96.37851 * 24 15 14 45 45 H 1.09004 * 110.40364 * 218.79344 * 24 15 14 46 46 H 1.09001 * 110.40423 * 83.34570 * 25 9 7 47 47 H 1.09004 * 110.39476 * 320.93457 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4119 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0844 -1.2056 -0.1128 9 7 1.3329 -2.3839 0.1411 10 6 -0.1307 -2.5332 0.1772 11 6 -0.4368 -4.0418 0.3279 12 6 0.8616 -4.6994 -0.1539 13 6 1.0599 -6.0972 0.4436 14 6 0.3234 -7.0072 -0.5671 15 7 0.2148 -6.2613 -1.8311 16 6 -0.3794 -6.7063 -2.9560 17 8 -0.3227 -6.0480 -3.9730 18 6 -1.1142 -8.0220 -2.9501 19 6 -2.5412 -7.9784 -2.3998 20 6 -2.8277 -7.0036 -1.2559 21 6 -3.3605 -6.7128 -2.6604 22 6 -0.8277 -8.9968 -4.0939 23 6 -0.2949 -9.2876 -2.6895 24 6 0.8697 -4.9467 -1.6665 25 6 1.9518 -3.7184 0.2834 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5643 -2.1581 -0.7497 28 1 -0.5402 -1.9855 1.0261 29 1 -1.2749 -4.3312 -0.3059 30 1 -0.6357 -4.2965 1.3690 31 1 0.6009 -6.1645 1.4299 32 1 2.1185 -6.3526 0.4934 33 1 -0.6714 -7.2479 -0.1923 34 1 0.8913 -7.9239 -0.7255 35 1 -3.0727 -8.9300 -2.3951 36 1 -3.5479 -7.3138 -0.4987 37 1 -1.9998 -6.3930 -0.8957 38 1 -2.8829 -5.9112 -3.2239 39 1 -4.4311 -6.8318 -2.8272 40 1 -1.6557 -9.6071 -4.4544 41 1 -0.1078 -8.6865 -4.8513 42 1 0.7757 -9.1686 -2.5227 43 1 -0.7725 -10.0892 -2.1260 44 1 1.8921 -4.9818 -2.0428 45 1 0.3010 -4.1718 -2.1807 46 1 2.2313 -3.8990 1.3214 47 1 2.8230 -3.8043 -0.3660 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041385196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:59 Heat of formation + Delta-G solvation = 52.323979 kcal Electronic energy + Delta-G solvation = -26479.686008 eV Core-core repulsion = 23050.980029 eV Total energy + Delta-G solvation = -3428.705980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.77555 -39.01790 -37.18493 -35.68288 -35.30999 -32.61913 -30.58471 -29.10577 -28.45586 -26.19246 -24.70282 -23.75188 -22.99989 -22.36644 -22.12837 -21.54608 -20.24666 -18.92041 -18.22670 -17.04039 -16.68264 -16.28273 -15.80131 -15.05291 -14.79086 -14.65814 -14.35080 -13.87957 -13.68703 -13.47402 -13.18780 -12.93112 -12.60118 -12.07673 -11.99493 -11.96115 -11.84052 -11.72639 -11.57895 -11.38569 -11.22052 -11.18301 -11.00206 -10.88451 -10.73103 -10.31211 -10.20612 -10.05821 -9.93588 -9.76246 -9.69919 -9.60102 -9.51518 -8.55206 -8.47284 -6.80613 -5.69949 -3.02390 2.67041 2.97842 3.31415 3.42136 3.47492 3.49414 3.96000 4.21036 4.39431 4.52032 4.66229 4.69509 4.71575 4.89349 4.93880 5.02175 5.07402 5.11971 5.31529 5.37667 5.40173 5.51842 5.56244 5.61346 5.64759 5.66172 5.82884 5.84790 5.89310 5.90306 5.95113 6.02772 6.06747 6.12145 6.14343 6.20767 6.32253 6.39945 6.52924 6.60723 6.73510 6.79901 7.57962 7.64544 7.65381 7.84871 8.27366 8.27617 9.23702 9.84199 10.50374 11.42055 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.023637 B = 0.003812 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.277251 B = 7343.235202 C = 7505.530440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.179 3.821 11 C -0.129 4.129 12 C -0.082 4.082 13 C -0.118 4.118 14 C 0.098 3.902 15 N -0.610 5.610 16 C 0.563 3.437 17 O -0.535 6.535 18 C -0.119 4.119 19 C -0.112 4.112 20 C -0.186 4.186 21 C -0.174 4.174 22 C -0.144 4.144 23 C -0.162 4.162 24 C 0.130 3.870 25 C 0.152 3.848 26 H 0.252 0.748 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.025 0.975 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 -20.993 -0.730 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.167 4.167 12 C -0.084 4.084 13 C -0.156 4.156 14 C -0.025 4.025 15 N -0.344 5.344 16 C 0.351 3.649 17 O -0.412 6.412 18 C -0.122 4.122 19 C -0.130 4.130 20 C -0.223 4.223 21 C -0.211 4.211 22 C -0.181 4.181 23 C -0.199 4.199 24 C 0.009 3.991 25 C 0.025 3.975 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.043 0.957 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.715 -20.415 -1.357 20.795 hybrid contribution 0.381 0.907 0.047 0.985 sum -3.335 -19.508 -1.310 19.834 Atomic orbital electron populations 1.69980 1.04918 1.25004 1.56747 1.24804 0.95661 0.97626 1.02146 0.86148 0.78708 0.83737 0.77478 1.21701 1.21669 1.20650 1.19039 0.91081 0.82545 1.43122 0.90478 1.44579 1.01518 1.00967 1.86094 1.21220 0.84344 0.88172 1.00871 1.22659 0.95060 0.99323 0.99643 1.21625 0.98947 0.94193 0.93645 1.22433 1.00791 0.94233 0.98192 1.22279 1.01060 0.95012 0.84151 1.48659 1.55928 1.18246 1.11559 1.19056 0.78077 0.85776 0.82010 1.90718 1.60692 1.58124 1.31645 1.20797 0.95196 0.89968 1.06254 1.21473 0.92509 0.95476 1.03568 1.23302 1.04180 1.02938 0.91858 1.23003 0.99647 0.98998 0.99418 1.22981 1.03378 1.00141 0.91637 1.23098 0.99772 0.97376 0.99632 1.22014 0.97496 0.83729 0.95886 1.21207 0.93357 0.85474 0.97420 0.93792 0.94050 0.93650 0.92292 0.92098 0.89888 0.90583 0.90732 0.91727 0.86923 0.88463 0.87385 0.88364 0.88521 0.87864 0.88125 0.88380 0.87816 0.91577 0.89860 0.95726 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.22 10.35 55.49 0.57 -26.64 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 22.28 29.56 -169.99 -5.02 17.26 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.40 10.27 -15.06 -0.15 -6.55 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.66 16 9 N -0.60 -15.22 3.41 -170.60 -0.58 -15.80 16 10 C 0.18 4.30 5.38 -2.80 -0.02 4.29 16 11 C -0.13 -2.32 5.92 -25.70 -0.15 -2.47 16 12 C -0.08 -1.35 0.62 -154.03 -0.10 -1.44 16 13 C -0.12 -1.42 5.97 -25.70 -0.15 -1.57 16 14 C 0.10 1.09 5.56 -2.80 -0.02 1.08 16 15 N -0.61 -8.87 2.70 -170.91 -0.46 -9.33 16 16 C 0.56 8.76 5.30 -10.98 -0.06 8.70 16 17 O -0.54 -10.64 17.24 5.56 0.10 -10.54 16 18 C -0.12 -1.38 1.68 -155.66 -0.26 -1.64 16 19 C -0.11 -1.16 5.85 -90.62 -0.53 -1.69 16 20 C -0.19 -2.03 8.97 -26.73 -0.24 -2.27 16 21 C -0.17 -2.06 9.92 -26.73 -0.27 -2.32 16 22 C -0.14 -1.43 9.89 -26.73 -0.26 -1.69 16 23 C -0.16 -1.41 8.86 -26.73 -0.24 -1.65 16 24 C 0.13 2.25 5.85 -3.20 -0.02 2.23 16 25 C 0.15 3.00 6.28 -3.31 -0.02 2.98 16 26 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.04 1.13 7.55 -51.93 -0.39 0.74 16 28 H 0.05 1.21 7.36 -51.93 -0.38 0.83 16 29 H 0.06 1.03 7.49 -51.93 -0.39 0.64 16 30 H 0.06 1.00 7.82 -51.93 -0.41 0.60 16 31 H 0.08 0.90 7.78 -51.93 -0.40 0.49 16 32 H 0.08 0.84 8.08 -51.92 -0.42 0.42 16 33 H 0.07 0.77 5.54 -51.93 -0.29 0.48 16 34 H 0.06 0.61 6.97 -51.93 -0.36 0.25 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.11 1.37 4.27 -51.93 -0.22 1.14 16 38 H 0.10 1.46 7.43 -51.93 -0.39 1.08 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.10 0.86 7.58 -51.93 -0.39 0.47 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.15 7.85 -51.92 -0.41 0.74 16 45 H 0.08 1.72 8.00 -51.93 -0.42 1.31 16 46 H 0.03 0.48 8.07 -51.93 -0.42 0.06 16 47 H 0.04 0.77 7.80 -51.93 -0.41 0.36 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -32.31 361.00 -10.31 -42.62 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.77 Total: 1.28 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.58 Total: -4.29 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.47 Total: -51.77 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.10 Total: -10.54 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.31 -10.31 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041385196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.946 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds