Wall clock time and date at job start Tue Mar 31 2020 09:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86808 * 119.99727 * 2 1 4 4 H 1.48504 * 109.46579 * 269.99610 * 3 2 1 5 5 H 1.48496 * 109.47104 * 29.99337 * 3 2 1 6 6 H 1.48499 * 109.47095 * 150.00125 * 3 2 1 7 7 C 1.38810 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00009 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.46653 * 125.33525 * 180.02562 * 9 7 2 11 11 C 1.53673 * 107.97238 * 179.31407 * 10 9 7 12 12 H 1.08998 * 112.77785 * 220.11348 * 11 10 9 13 13 C 1.53984 * 109.29583 * 93.06411 * 11 10 9 14 14 N 1.46758 * 106.67727 * 221.16679 * 13 11 10 15 15 C 1.34777 * 125.33056 * 198.41697 * 14 13 11 16 16 O 1.21291 * 119.99918 * 174.20816 * 15 14 13 17 17 C 1.50697 * 120.00652 * 354.20442 * 15 14 13 18 18 C 1.52999 * 112.84756 * 287.01380 * 17 15 14 19 19 C 1.53005 * 117.50178 * 7.31476 * 18 17 15 20 20 C 1.52998 * 117.49909 * 298.69103 * 18 17 15 21 21 C 1.53779 * 113.61932 * 155.70379 * 17 15 14 22 22 C 1.53775 * 87.08251 * 220.01923 * 21 17 15 23 23 C 1.53776 * 87.08217 * 25.43422 * 22 21 17 24 24 C 1.46652 * 109.33393 * 18.45107 * 14 13 11 25 25 C 1.53680 * 107.96843 * 359.29107 * 24 14 13 26 26 H 1.08996 * 112.77442 * 219.38910 * 25 24 14 27 27 C 1.46759 * 125.33051 * 0.02996 * 9 7 2 28 28 H 0.96998 * 119.99779 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.76697 * 298.94343 * 10 9 7 30 30 H 1.08994 * 109.76854 * 59.68351 * 10 9 7 31 31 H 1.09002 * 110.01460 * 101.86436 * 13 11 10 32 32 H 1.08994 * 110.05862 * 340.49565 * 13 11 10 33 33 H 1.09005 * 115.55055 * 153.02084 * 18 17 15 34 34 H 1.09000 * 117.49178 * 359.97438 * 19 18 17 35 35 H 1.08996 * 117.49889 * 145.01911 * 19 18 17 36 36 H 1.09003 * 117.49610 * 214.97843 * 20 18 17 37 37 H 1.08999 * 117.49829 * 359.97438 * 20 18 17 38 38 H 1.08997 * 113.61326 * 334.57104 * 21 17 15 39 39 H 1.09000 * 113.61238 * 105.46949 * 21 17 15 40 40 H 1.08997 * 113.61968 * 270.88354 * 22 21 17 41 41 H 1.09010 * 113.61285 * 139.97599 * 22 21 17 42 42 H 1.08998 * 113.61513 * 220.02071 * 23 22 21 43 43 H 1.08998 * 113.69828 * 89.12321 * 23 22 21 44 44 H 1.08993 * 109.77115 * 239.66342 * 24 14 13 45 45 H 1.08994 * 109.78307 * 118.92649 * 24 14 13 46 46 H 1.09000 * 110.01784 * 317.72704 * 27 9 7 47 47 H 1.08999 * 110.02238 * 79.12406 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4475 2.6528 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 1.9378 -3.7207 0.0028 11 6 0.8074 -4.7616 0.0212 12 1 1.0247 -5.6091 0.6714 13 6 0.4700 -5.1720 -1.4241 14 7 -0.9924 -5.2655 -1.5048 15 6 -1.6799 -5.9203 -2.4614 16 8 -2.8854 -6.0249 -2.3779 17 6 -0.9510 -6.5224 -3.6349 18 6 -0.4529 -5.4705 -4.6281 19 6 -0.5957 -3.9999 -4.2306 20 6 -1.5021 -4.5917 -5.3119 21 6 -1.7047 -7.6884 -4.2960 22 6 -0.3420 -8.3875 -4.4345 23 6 0.1226 -7.5475 -3.2332 24 6 -1.5884 -4.5343 -0.3820 25 6 -0.4455 -3.9585 0.4689 26 1 -0.6437 -4.0202 1.5389 27 6 -0.1355 -2.5245 0.0016 28 1 -0.4850 0.8400 -0.0004 29 1 2.5428 -3.8493 -0.8948 30 1 2.5621 -3.8388 0.8883 31 1 0.9188 -6.1389 -1.6518 32 1 0.8347 -4.4181 -2.1216 33 1 0.4247 -5.7519 -5.2102 34 1 -1.0450 -3.7819 -3.2618 35 1 0.1880 -3.3136 -4.5511 36 1 -1.3146 -4.2946 -6.3438 37 1 -2.5473 -4.7632 -5.0546 38 1 -2.3922 -8.2012 -3.6234 39 1 -2.1608 -7.4279 -5.2511 40 1 0.1789 -8.1490 -5.3617 41 1 -0.3777 -9.4578 -4.2311 42 1 1.1417 -7.1732 -3.3302 43 1 -0.0645 -8.0206 -2.2692 44 1 -2.1914 -5.2127 0.2214 45 1 -2.2118 -3.7236 -0.7591 46 1 -0.5775 -1.8040 0.6898 47 1 -0.5250 -2.3677 -1.0043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048964708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:32 Heat of formation + Delta-G solvation = 47.429953 kcal Electronic energy + Delta-G solvation = -26888.783662 eV Core-core repulsion = 23459.865461 eV Total energy + Delta-G solvation = -3428.918200 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.09368 -39.14457 -37.34824 -35.85229 -34.93859 -32.26814 -30.44257 -29.46832 -27.09530 -25.98183 -25.32028 -25.21322 -23.04840 -22.21543 -22.02847 -20.21420 -19.96904 -19.26073 -18.26140 -16.94550 -16.60184 -16.22732 -16.01341 -15.21943 -14.79891 -14.62953 -14.14656 -13.73342 -13.64064 -13.26451 -12.96986 -12.87324 -12.64599 -12.39578 -12.13953 -11.94908 -11.76607 -11.67908 -11.41327 -11.31040 -11.27467 -10.92593 -10.84579 -10.73598 -10.59831 -10.43407 -10.16580 -10.09748 -10.05501 -9.88727 -9.82070 -9.56737 -9.31657 -8.64742 -8.28168 -6.86265 -5.70419 -3.09687 2.81069 3.25633 3.37971 3.43219 3.45223 3.72243 4.30561 4.46429 4.53095 4.55912 4.70627 4.75394 4.88717 5.03729 5.08080 5.14672 5.20234 5.28024 5.48975 5.49399 5.57114 5.59342 5.63631 5.66626 5.74376 5.75606 5.77533 5.90712 5.91822 5.97573 6.01571 6.11341 6.20721 6.22655 6.27791 6.28836 6.31779 6.38209 6.53681 6.58906 6.67516 6.84516 7.48889 7.61099 7.80766 7.81320 8.30150 8.39265 9.19752 9.80538 10.43604 11.35617 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.004378 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.448815 B = 6393.850491 C = 6696.789715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.146 3.854 11 C -0.110 4.110 12 H 0.087 0.913 13 C 0.108 3.892 14 N -0.603 5.603 15 C 0.543 3.457 16 O -0.548 6.548 17 C -0.068 4.068 18 C -0.129 4.129 19 C -0.175 4.175 20 C -0.176 4.176 21 C -0.110 4.110 22 C -0.139 4.139 23 C -0.126 4.126 24 C 0.118 3.882 25 C -0.122 4.122 26 H 0.091 0.909 27 C 0.171 3.829 28 H 0.252 0.748 29 H 0.025 0.975 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 -15.146 -7.076 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.020 3.980 11 C -0.129 4.129 12 H 0.105 0.895 13 C -0.015 4.015 14 N -0.336 5.336 15 C 0.331 3.669 16 O -0.426 6.426 17 C -0.071 4.071 18 C -0.147 4.147 19 C -0.212 4.212 20 C -0.212 4.212 21 C -0.148 4.148 22 C -0.176 4.176 23 C -0.164 4.164 24 C -0.004 4.004 25 C -0.142 4.142 26 H 0.109 0.891 27 C 0.046 3.954 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.110 0.890 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.481 -14.996 -7.081 16.591 hybrid contribution 0.523 1.001 0.014 1.129 sum 0.042 -13.995 -7.068 15.679 Atomic orbital electron populations 1.69871 1.04862 1.24916 1.57206 1.24781 0.95695 0.97683 1.02184 0.86109 0.78568 0.83458 0.77562 1.21645 1.21664 1.20688 1.19041 0.90484 0.82352 1.43614 0.90446 1.44228 1.01639 0.99812 1.87016 1.21061 0.93225 0.85590 0.98139 1.22800 0.97087 0.98142 0.94895 0.89479 1.22300 0.79991 1.01415 0.97788 1.48264 1.07758 1.51390 1.26165 1.19952 0.86966 0.77476 0.82462 1.90667 1.14345 1.59780 1.77855 1.21542 0.97723 0.94379 0.93487 1.21803 1.01089 0.90904 1.00912 1.23236 1.02811 0.94518 1.00616 1.22954 0.96759 1.03738 0.97794 1.22811 0.96355 0.94562 1.01026 1.22823 0.97130 0.99166 0.98498 1.23024 0.98392 0.96025 0.98916 1.21759 0.96124 0.95198 0.87333 1.23217 0.92548 0.99380 0.99064 0.89054 1.21520 0.84698 0.89668 0.99510 0.93704 0.95760 0.95802 0.91153 0.90399 0.86917 0.87793 0.88278 0.88718 0.88699 0.89485 0.90777 0.89866 0.91219 0.90290 0.89717 0.92391 0.91177 0.88983 0.96289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.31 10.16 55.49 0.56 -25.74 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.10 10.25 -15.06 -0.15 -6.26 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.60 3.38 -171.90 -0.58 -15.18 16 10 C 0.15 2.83 6.58 -3.61 -0.02 2.80 16 11 C -0.11 -1.76 4.10 -88.48 -0.36 -2.12 16 12 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 13 C 0.11 1.60 5.07 -3.39 -0.02 1.59 16 14 N -0.60 -9.71 2.25 -172.34 -0.39 -10.09 16 15 C 0.54 8.83 5.24 -10.99 -0.06 8.77 16 16 O -0.55 -10.72 16.66 5.55 0.09 -10.63 16 17 C -0.07 -0.86 0.57 -154.85 -0.09 -0.95 16 18 C -0.13 -1.57 5.04 -90.62 -0.46 -2.02 16 19 C -0.17 -2.57 8.21 -26.73 -0.22 -2.79 16 20 C -0.18 -2.24 10.09 -26.73 -0.27 -2.51 16 21 C -0.11 -1.24 6.87 -25.92 -0.18 -1.42 16 22 C -0.14 -1.23 7.81 -25.92 -0.20 -1.43 16 23 C -0.13 -1.29 5.03 -25.92 -0.13 -1.42 16 24 C 0.12 2.04 6.20 -3.61 -0.02 2.02 16 25 C -0.12 -2.19 4.10 -88.48 -0.36 -2.55 16 26 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 27 C 0.17 3.96 4.87 -3.39 -0.02 3.94 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.02 0.46 7.63 -51.93 -0.40 0.07 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.87 5.31 -51.93 -0.28 0.60 16 32 H 0.08 1.30 6.26 -51.93 -0.33 0.98 16 33 H 0.11 1.17 8.12 -51.93 -0.42 0.75 16 34 H 0.10 1.84 5.70 -51.93 -0.30 1.55 16 35 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.09 1.07 7.86 -51.93 -0.41 0.66 16 39 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.08 0.74 7.49 -51.93 -0.39 0.35 16 43 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.07 1.33 7.63 -51.93 -0.40 0.93 16 46 H 0.09 2.44 6.19 -51.93 -0.32 2.12 16 47 H 0.02 0.49 7.56 -51.93 -0.39 0.09 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -30.38 354.13 -10.47 -40.85 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.81 Total: 3.46 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -2.66 Total: -4.65 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.40 Total: -51.02 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.38 -10.47 -40.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048964708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.280 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds