Wall clock time and date at job start Tue Mar 31 2020 09:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86808 * 119.99727 * 2 1 4 4 H 1.48504 * 109.46579 * 269.99610 * 3 2 1 5 5 H 1.48496 * 109.47104 * 29.99337 * 3 2 1 6 6 H 1.48499 * 109.47095 * 150.00125 * 3 2 1 7 7 C 1.38810 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00009 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.46653 * 125.33525 * 180.02562 * 9 7 2 11 11 C 1.53673 * 107.97238 * 179.31407 * 10 9 7 12 12 H 1.08998 * 112.77785 * 220.11348 * 11 10 9 13 13 C 1.53984 * 109.29583 * 93.06411 * 11 10 9 14 14 N 1.46758 * 106.67727 * 221.16679 * 13 11 10 15 15 C 1.34777 * 125.33056 * 198.41697 * 14 13 11 16 16 O 1.21291 * 119.99918 * 174.20816 * 15 14 13 17 17 C 1.50697 * 120.00652 * 354.20442 * 15 14 13 18 18 C 1.52999 * 112.84756 * 287.01380 * 17 15 14 19 19 C 1.53005 * 117.50178 * 7.31476 * 18 17 15 20 20 C 1.52998 * 117.49909 * 298.69103 * 18 17 15 21 21 C 1.53779 * 113.61932 * 155.70379 * 17 15 14 22 22 C 1.53775 * 87.08251 * 220.01923 * 21 17 15 23 23 C 1.53776 * 87.08217 * 25.43422 * 22 21 17 24 24 C 1.46652 * 109.33393 * 18.45107 * 14 13 11 25 25 C 1.53680 * 107.96843 * 359.29107 * 24 14 13 26 26 H 1.08996 * 112.77442 * 219.38910 * 25 24 14 27 27 C 1.46759 * 125.33051 * 0.02996 * 9 7 2 28 28 H 0.96998 * 119.99779 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.76697 * 298.94343 * 10 9 7 30 30 H 1.08994 * 109.76854 * 59.68351 * 10 9 7 31 31 H 1.09002 * 110.01460 * 101.86436 * 13 11 10 32 32 H 1.08994 * 110.05862 * 340.49565 * 13 11 10 33 33 H 1.09005 * 115.55055 * 153.02084 * 18 17 15 34 34 H 1.09000 * 117.49178 * 359.97438 * 19 18 17 35 35 H 1.08996 * 117.49889 * 145.01911 * 19 18 17 36 36 H 1.09003 * 117.49610 * 214.97843 * 20 18 17 37 37 H 1.08999 * 117.49829 * 359.97438 * 20 18 17 38 38 H 1.08997 * 113.61326 * 334.57104 * 21 17 15 39 39 H 1.09000 * 113.61238 * 105.46949 * 21 17 15 40 40 H 1.08997 * 113.61968 * 270.88354 * 22 21 17 41 41 H 1.09010 * 113.61285 * 139.97599 * 22 21 17 42 42 H 1.08998 * 113.61513 * 220.02071 * 23 22 21 43 43 H 1.08998 * 113.69828 * 89.12321 * 23 22 21 44 44 H 1.08993 * 109.77115 * 239.66342 * 24 14 13 45 45 H 1.08994 * 109.78307 * 118.92649 * 24 14 13 46 46 H 1.09000 * 110.01784 * 317.72704 * 27 9 7 47 47 H 1.08999 * 110.02238 * 79.12406 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4475 2.6528 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 1.9378 -3.7207 0.0028 11 6 0.8074 -4.7616 0.0212 12 1 1.0247 -5.6091 0.6714 13 6 0.4700 -5.1720 -1.4241 14 7 -0.9924 -5.2655 -1.5048 15 6 -1.6799 -5.9203 -2.4614 16 8 -2.8854 -6.0249 -2.3779 17 6 -0.9510 -6.5224 -3.6349 18 6 -0.4529 -5.4705 -4.6281 19 6 -0.5957 -3.9999 -4.2306 20 6 -1.5021 -4.5917 -5.3119 21 6 -1.7047 -7.6884 -4.2960 22 6 -0.3420 -8.3875 -4.4345 23 6 0.1226 -7.5475 -3.2332 24 6 -1.5884 -4.5343 -0.3820 25 6 -0.4455 -3.9585 0.4689 26 1 -0.6437 -4.0202 1.5389 27 6 -0.1355 -2.5245 0.0016 28 1 -0.4850 0.8400 -0.0004 29 1 2.5428 -3.8493 -0.8948 30 1 2.5621 -3.8388 0.8883 31 1 0.9188 -6.1389 -1.6518 32 1 0.8347 -4.4181 -2.1216 33 1 0.4247 -5.7519 -5.2102 34 1 -1.0450 -3.7819 -3.2618 35 1 0.1880 -3.3136 -4.5511 36 1 -1.3146 -4.2946 -6.3438 37 1 -2.5473 -4.7632 -5.0546 38 1 -2.3922 -8.2012 -3.6234 39 1 -2.1608 -7.4279 -5.2511 40 1 0.1789 -8.1490 -5.3617 41 1 -0.3777 -9.4578 -4.2311 42 1 1.1417 -7.1732 -3.3302 43 1 -0.0645 -8.0206 -2.2692 44 1 -2.1914 -5.2127 0.2214 45 1 -2.2118 -3.7236 -0.7591 46 1 -0.5775 -1.8040 0.6898 47 1 -0.5250 -2.3677 -1.0043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048964708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:31 Heat of formation + Delta-G solvation = 31.140585 kcal Electronic energy + Delta-G solvation = -26889.490022 eV Core-core repulsion = 23459.865461 eV Total energy + Delta-G solvation = -3429.624560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.25694 -40.48642 -38.64496 -36.87867 -36.55810 -34.09325 -31.98749 -31.14084 -28.33255 -27.16868 -26.91125 -26.44475 -24.52981 -23.32390 -23.05010 -21.94404 -21.06448 -20.73510 -19.44494 -18.77295 -17.86354 -17.56039 -17.12317 -16.61896 -16.27966 -15.84958 -15.59644 -15.47854 -14.88436 -14.58651 -14.39124 -14.28457 -13.65230 -13.59788 -13.52543 -13.36326 -13.14041 -13.08162 -12.95426 -12.73760 -12.67883 -12.46611 -12.23777 -11.97551 -11.89038 -11.83886 -11.60631 -11.58515 -11.45817 -11.22399 -11.16495 -10.86981 -10.72339 -10.51999 -9.62896 -8.86006 -7.78704 -5.19603 1.46862 1.47918 1.54393 1.56841 2.01151 2.50427 2.68011 3.26978 3.34057 3.45210 3.52572 3.61867 3.67271 3.79518 3.87371 3.94961 3.99005 4.04802 4.12832 4.23434 4.27462 4.32813 4.50585 4.56554 4.65590 4.71596 4.74667 4.80384 4.81422 4.86473 4.92962 4.96152 5.02289 5.06234 5.11348 5.12789 5.14874 5.16387 5.25681 5.30249 5.41655 5.49622 5.52295 5.63549 5.81290 6.28249 6.53818 7.10330 7.12690 7.82176 8.43310 9.25543 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.004378 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.448815 B = 6393.850491 C = 6696.789715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.235 4.235 8 H 0.085 0.915 9 N -0.621 5.621 10 C 0.141 3.859 11 C -0.094 4.094 12 H 0.128 0.872 13 C 0.113 3.887 14 N -0.602 5.602 15 C 0.537 3.463 16 O -0.590 6.590 17 C -0.078 4.078 18 C -0.103 4.103 19 C -0.199 4.199 20 C -0.171 4.171 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.122 4.122 24 C 0.124 3.876 25 C -0.112 4.112 26 H 0.106 0.894 27 C 0.185 3.815 28 H 0.244 0.756 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.108 0.892 32 H 0.058 0.942 33 H 0.146 0.854 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.038 0.962 46 H 0.051 0.949 47 H -0.019 1.019 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.808 -17.976 -7.955 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.804 3.196 4 H -0.216 1.216 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.364 4.364 8 H 0.103 0.897 9 N -0.347 5.347 10 C 0.016 3.984 11 C -0.114 4.114 12 H 0.146 0.854 13 C -0.009 4.009 14 N -0.334 5.334 15 C 0.328 3.672 16 O -0.471 6.471 17 C -0.081 4.081 18 C -0.121 4.121 19 C -0.236 4.236 20 C -0.208 4.208 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.160 4.160 24 C 0.000 4.000 25 C -0.132 4.132 26 H 0.124 0.876 27 C 0.060 3.940 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.126 0.874 32 H 0.076 0.924 33 H 0.164 0.836 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.056 0.944 46 H 0.069 0.931 47 H -0.001 1.001 Dipole moment (debyes) X Y Z Total from point charges 2.125 -17.860 -7.957 19.668 hybrid contribution -0.319 1.917 0.290 1.965 sum 1.806 -15.943 -7.666 17.783 Atomic orbital electron populations 1.70146 1.06317 1.24847 1.58749 1.25598 0.96464 1.00949 1.02857 0.85114 0.77791 0.79358 0.77306 1.21637 1.22435 1.19037 1.19454 0.91111 0.83606 1.42237 0.89679 1.44517 1.02181 1.01237 1.86808 1.21280 0.94371 0.83958 0.98840 1.22862 0.94240 0.98097 0.96163 0.85364 1.22315 0.79143 1.02739 0.96671 1.48322 1.08347 1.50858 1.25877 1.20759 0.86701 0.76736 0.82995 1.90637 1.16329 1.61443 1.78720 1.21758 0.99206 0.94928 0.92186 1.21957 1.01392 0.88862 0.99858 1.23040 1.03850 0.97047 0.99643 1.22981 0.95741 1.03664 0.98422 1.22843 0.97689 0.94182 1.00524 1.22787 0.94572 0.99733 0.98570 1.23084 0.98210 0.94935 0.99752 1.21572 0.95775 0.94725 0.87901 1.23025 0.94131 0.96241 0.99773 0.87618 1.21120 0.84335 0.92163 0.96411 0.94672 0.94710 0.94750 0.87384 0.92391 0.83639 0.91614 0.88487 0.86248 0.90730 0.90998 0.90641 0.87967 0.89599 0.88499 0.89641 0.91054 0.94367 0.93074 1.00133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.19 10.16 21.65 0.22 -56.97 16 2 C -0.07 -3.72 5.48 84.86 0.47 -3.26 16 3 Si 0.98 45.43 29.55 68.60 2.03 47.46 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.24 -12.81 10.25 84.03 0.86 -11.94 16 8 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.62 -30.62 3.38 -697.76 -2.36 -32.98 16 10 C 0.14 5.18 6.58 86.58 0.57 5.75 16 11 C -0.09 -2.80 4.10 -9.40 -0.04 -2.83 16 12 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 13 C 0.11 3.15 5.07 86.66 0.44 3.59 16 14 N -0.60 -19.26 2.25 -817.55 -1.84 -21.10 16 15 C 0.54 17.44 5.24 87.66 0.46 17.90 16 16 O -0.59 -23.80 16.66 -3.06 -0.05 -23.85 16 17 C -0.08 -1.80 0.57 -52.40 -0.03 -1.83 16 18 C -0.10 -2.28 5.04 -10.79 -0.05 -2.33 16 19 C -0.20 -5.93 8.21 30.60 0.25 -5.68 16 20 C -0.17 -4.28 10.09 30.59 0.31 -3.97 16 21 C -0.11 -2.33 6.87 31.12 0.21 -2.11 16 22 C -0.12 -1.57 7.81 31.12 0.24 -1.33 16 23 C -0.12 -1.99 5.03 31.12 0.16 -1.83 16 24 C 0.12 4.38 6.20 86.58 0.54 4.92 16 25 C -0.11 -4.02 4.10 -9.41 -0.04 -4.06 16 26 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 27 C 0.19 9.01 4.87 86.66 0.42 9.44 16 28 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.03 1.23 7.63 -2.39 -0.02 1.21 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 2.22 5.31 -2.39 -0.01 2.21 16 32 H 0.06 1.88 6.26 -2.39 -0.01 1.87 16 33 H 0.15 2.35 8.12 -2.38 -0.02 2.33 16 34 H 0.07 2.50 5.70 -2.39 -0.01 2.48 16 35 H 0.10 2.87 8.14 -2.39 -0.02 2.86 16 36 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.07 1.69 7.86 -2.39 -0.02 1.67 16 39 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.10 1.27 7.49 -2.39 -0.02 1.25 16 43 H 0.09 1.42 8.04 -2.39 -0.02 1.40 16 44 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.04 1.58 7.63 -2.39 -0.02 1.56 16 46 H 0.05 2.90 6.19 -2.39 -0.01 2.89 16 47 H -0.02 -1.07 7.56 -2.39 -0.02 -1.08 16 Total: -1.00 -71.20 354.13 3.71 -67.49 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.95 Total: 19.55 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 4.76 Total: 0.40 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -3.97 Total: -111.05 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.85 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -71.20 3.71 -67.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048964708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.628 kcal (2) G-P(sol) polarization free energy of solvation -71.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds