Wall clock time and date at job start Tue Mar 31 2020 08:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47328 * 2 1 4 4 C 1.53001 * 109.47112 * 120.00703 * 2 1 3 5 5 N 1.46496 * 109.46898 * 174.99691 * 4 2 1 6 6 C 1.46503 * 120.00034 * 269.99405 * 5 4 2 7 7 C 1.36938 * 120.00168 * 90.00395 * 5 4 2 8 8 H 1.08005 * 119.99765 * 23.82022 * 7 5 4 9 9 C 1.38809 * 119.99940 * 203.83083 * 7 5 4 10 10 N 1.31611 * 120.00192 * 10.86572 * 9 7 5 11 11 Si 1.86798 * 119.99745 * 190.86230 * 9 7 5 12 12 H 1.48502 * 109.47515 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47127 * 119.99801 * 11 9 7 14 14 H 1.48499 * 109.47357 * 239.99776 * 11 9 7 15 15 N 1.46505 * 109.46945 * 240.00278 * 2 1 3 16 16 C 1.34780 * 119.99840 * 85.00253 * 15 2 1 17 17 O 1.21276 * 120.00061 * 359.97438 * 16 15 2 18 18 C 1.50705 * 119.99867 * 179.72366 * 16 15 2 19 19 C 1.52992 * 109.47218 * 300.27595 * 18 16 15 20 20 C 1.53003 * 109.47354 * 179.97438 * 19 18 16 21 21 C 1.53004 * 109.46710 * 59.99757 * 20 19 18 22 22 F 1.39899 * 109.46953 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.46836 * 60.00389 * 21 20 19 24 24 C 1.53001 * 109.47313 * 300.00011 * 21 20 19 25 25 C 1.53003 * 109.46911 * 60.00503 * 24 21 20 26 26 H 1.08998 * 109.47225 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46551 * 299.99598 * 1 2 3 28 28 H 1.08999 * 109.47009 * 59.99513 * 1 2 3 29 29 H 1.08996 * 109.46783 * 294.99921 * 4 2 1 30 30 H 1.09000 * 109.47102 * 54.99505 * 4 2 1 31 31 H 1.09000 * 109.46699 * 94.94856 * 6 5 4 32 32 H 1.09001 * 109.46948 * 214.94933 * 6 5 4 33 33 H 1.08997 * 109.47343 * 334.95242 * 6 5 4 34 34 H 0.97005 * 119.99898 * 180.02562 * 10 9 7 35 35 H 0.97002 * 120.00234 * 265.00073 * 15 2 1 36 36 H 1.09003 * 109.46825 * 60.27511 * 18 16 15 37 37 H 1.09003 * 109.47151 * 300.00272 * 19 18 16 38 38 H 1.09004 * 109.47394 * 59.99589 * 19 18 16 39 39 H 1.08997 * 109.46573 * 300.00364 * 20 19 18 40 40 H 1.08998 * 109.47127 * 179.97438 * 20 19 18 41 41 H 1.08995 * 109.47053 * 300.00514 * 24 21 20 42 42 H 1.08996 * 109.47003 * 180.02562 * 24 21 20 43 43 H 1.08998 * 109.47246 * 180.02562 * 25 24 21 44 44 H 1.08997 * 109.47348 * 59.99179 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 3.5001 -0.8266 1.1904 6 6 4.1258 -1.9922 0.5610 7 6 4.2800 0.1645 1.7240 8 1 3.8846 0.8045 2.4990 9 6 5.5785 0.3468 1.2686 10 7 5.9910 -0.2806 0.1877 11 14 6.7405 1.4826 2.1900 12 1 6.0392 2.0624 3.3635 13 1 7.9232 0.7122 2.6517 14 1 7.1834 2.5757 1.2876 15 7 2.0184 -0.6906 -1.1963 16 6 2.1471 -0.0181 -2.3572 17 8 1.8583 1.1585 -2.4117 18 6 2.6553 -0.7270 -3.5862 19 6 4.0567 -1.2775 -3.3146 20 6 4.5724 -1.9977 -4.5621 21 6 4.6290 -1.0136 -5.7322 22 9 5.1011 -1.6719 -6.8728 23 9 5.4907 0.0413 -5.4130 24 6 3.2275 -0.4630 -6.0039 25 6 2.7119 0.2572 -4.7563 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.7517 -0.1586 2.1369 30 1 1.6054 -1.7199 1.2950 31 1 4.3598 -1.7618 -0.4784 32 1 5.0433 -2.2435 1.0930 33 1 3.4397 -2.8382 0.6000 34 1 6.8986 -0.1535 -0.1303 35 1 2.2491 -1.6318 -1.1528 36 1 1.9840 -1.5488 -3.8352 37 1 4.7279 -0.4556 -3.0654 38 1 4.0163 -1.9789 -2.4811 39 1 3.9010 -2.8195 -4.8107 40 1 5.5710 -2.3895 -4.3687 41 1 2.5562 -1.2849 -6.2525 42 1 3.2678 0.2377 -6.8378 43 1 1.7133 0.6490 -4.9497 44 1 3.3833 1.0790 -4.5077 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754329393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:05 Heat of formation + Delta-G solvation = -138.160363 kcal Electronic energy + Delta-G solvation = -27110.508814 eV Core-core repulsion = 23119.313283 eV Total energy + Delta-G solvation = -3991.195530 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.170 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.86377 -46.84493 -39.70974 -37.16922 -36.10652 -34.00371 -31.64576 -30.95976 -30.56020 -29.36030 -26.20888 -25.61794 -23.67655 -23.05669 -21.74806 -20.58276 -20.00244 -19.48007 -17.35270 -16.83174 -16.72041 -16.69296 -16.15533 -15.52073 -14.87869 -14.53151 -14.15935 -13.96974 -13.79545 -13.47656 -13.28514 -13.24048 -13.14836 -12.94856 -12.78536 -12.42951 -12.18217 -12.09573 -11.88936 -11.58176 -11.51144 -11.41986 -11.17056 -11.07755 -10.85492 -10.77637 -10.57176 -10.55376 -10.23250 -10.03658 -9.92269 -9.86030 -9.17041 -8.59765 -8.34087 -6.74572 -5.73705 -3.19513 3.19455 3.38490 3.46541 3.47742 3.75614 3.81466 4.12295 4.39450 4.43331 4.51006 4.87304 5.02256 5.13753 5.17923 5.26298 5.34196 5.37391 5.48686 5.62964 5.63778 5.71300 5.79924 5.81105 5.88135 5.99492 6.08147 6.09214 6.12044 6.24231 6.33373 6.46783 6.52481 6.54558 6.62059 6.89098 7.20223 7.29867 7.64335 7.80645 8.15032 8.38654 8.85203 9.22716 9.84546 10.32773 11.31264 Molecular weight = 304.17amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.005429 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.069480 B = 5155.792763 C = 6419.231165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.596 5.596 6 C 0.159 3.841 7 C -0.256 4.256 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.902 5.902 11 Si 0.902 3.098 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.697 5.697 16 C 0.523 3.477 17 O -0.551 6.551 18 C -0.109 4.109 19 C -0.108 4.108 20 C -0.153 4.153 21 C 0.285 3.715 22 F -0.208 7.208 23 F -0.195 7.195 24 C -0.155 4.155 25 C -0.098 4.098 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.042 0.958 33 H -0.007 1.007 34 H 0.250 0.750 35 H 0.394 0.606 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.086 -6.284 -9.736 14.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.103 0.897 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.014 3.986 7 C -0.385 4.385 8 H 0.085 0.915 9 C -0.192 4.192 10 N -0.547 5.547 11 Si 0.732 3.268 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.218 1.218 15 N -0.346 5.346 16 C 0.309 3.691 17 O -0.430 6.430 18 C -0.131 4.131 19 C -0.146 4.146 20 C -0.191 4.191 21 C 0.249 3.751 22 F -0.189 7.189 23 F -0.176 7.176 24 C -0.193 4.193 25 C -0.136 4.136 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.011 0.989 34 H 0.061 0.939 35 H 0.228 0.772 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.070 -5.444 -9.825 13.831 hybrid contribution 1.085 0.230 0.268 1.142 sum -6.984 -5.214 -9.557 12.934 Atomic orbital electron populations 1.22150 0.97025 1.00968 1.01616 1.21850 0.91540 0.99192 0.86530 0.89717 1.21188 0.85849 0.97120 0.94381 1.43861 0.98998 1.20837 1.68164 1.20912 0.94462 0.85046 0.98134 1.19187 0.94670 1.10582 1.14076 0.91527 1.24990 0.98840 0.98957 0.96366 1.70005 1.17154 1.45393 1.22113 0.86232 0.81038 0.80379 0.79142 1.20427 1.21749 1.21774 1.45787 1.65969 1.13593 1.09264 1.20223 0.77287 0.87105 0.84522 1.90643 1.51112 1.15933 1.85266 1.21386 0.98414 0.99020 0.94241 1.21509 0.94821 1.01846 0.96383 1.22510 1.04722 0.97847 0.94034 1.21191 0.87695 0.82850 0.83354 1.92981 1.90369 1.81776 1.53798 1.93024 1.72759 1.58905 1.92957 1.22528 0.93648 1.02438 1.00691 1.21297 1.03090 0.97904 0.91285 0.93283 0.92188 0.93047 0.92417 0.94138 0.94594 0.93973 0.98877 0.93931 0.77220 0.88984 0.89220 0.89318 0.89070 0.89105 0.88983 0.89508 0.90054 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.48 37.16 0.35 -1.97 16 2 C 0.12 2.11 2.88 -67.92 -0.20 1.92 16 3 H 0.08 1.90 7.58 -51.93 -0.39 1.50 16 4 C 0.14 2.68 5.33 -4.04 -0.02 2.66 16 5 N -0.60 -13.79 2.78 -181.12 -0.50 -14.30 16 6 C 0.16 3.49 7.59 59.85 0.45 3.95 16 7 C -0.26 -6.76 9.66 -15.06 -0.15 -6.91 16 8 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 9 C 0.01 0.19 5.14 -17.43 -0.09 0.10 16 10 N -0.90 -24.90 10.64 55.49 0.59 -24.31 16 11 Si 0.90 21.89 29.57 -169.99 -5.03 16.86 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 N -0.70 -11.94 4.31 -53.80 -0.23 -12.17 16 16 C 0.52 9.34 7.12 -10.98 -0.08 9.26 16 17 O -0.55 -11.89 15.65 5.56 0.09 -11.80 16 18 C -0.11 -1.50 2.53 -91.77 -0.23 -1.73 16 19 C -0.11 -1.56 4.97 -26.73 -0.13 -1.70 16 20 C -0.15 -1.83 5.45 -26.73 -0.15 -1.98 16 21 C 0.29 3.71 2.10 -26.73 -0.06 3.66 16 22 F -0.21 -2.80 17.06 2.25 0.04 -2.76 16 23 F -0.20 -3.16 16.02 2.25 0.04 -3.12 16 24 C -0.15 -1.69 5.46 -26.73 -0.15 -1.84 16 25 C -0.10 -1.30 4.37 -26.73 -0.12 -1.42 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 30 H 0.04 0.67 7.86 -51.93 -0.41 0.26 16 31 H 0.04 0.81 5.56 -51.93 -0.29 0.52 16 32 H 0.04 1.04 7.33 -51.93 -0.38 0.66 16 33 H -0.01 -0.14 7.84 -51.93 -0.41 -0.54 16 34 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.39 6.11 6.59 -40.82 -0.27 5.84 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.67 7.80 -51.93 -0.41 1.26 16 38 H 0.09 1.30 6.21 -51.93 -0.32 0.98 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 44 H 0.08 1.32 7.76 -51.93 -0.40 0.92 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -30.76 351.39 -7.31 -38.07 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.04 Total: 4.23 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.55 Total: 4.00 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.14 Total: -50.78 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.07 Total: -5.88 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.76 -7.31 -38.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.092 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds