Wall clock time and date at job start Tue Mar 31 2020 08:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47328 * 2 1 4 4 C 1.53001 * 109.47112 * 120.00703 * 2 1 3 5 5 N 1.46496 * 109.46898 * 174.99691 * 4 2 1 6 6 C 1.46503 * 120.00034 * 269.99405 * 5 4 2 7 7 C 1.36938 * 120.00168 * 90.00395 * 5 4 2 8 8 H 1.08005 * 119.99765 * 23.82022 * 7 5 4 9 9 C 1.38809 * 119.99940 * 203.83083 * 7 5 4 10 10 N 1.31611 * 120.00192 * 10.86572 * 9 7 5 11 11 Si 1.86798 * 119.99745 * 190.86230 * 9 7 5 12 12 H 1.48502 * 109.47515 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47127 * 119.99801 * 11 9 7 14 14 H 1.48499 * 109.47357 * 239.99776 * 11 9 7 15 15 N 1.46505 * 109.46945 * 240.00278 * 2 1 3 16 16 C 1.34780 * 119.99840 * 85.00253 * 15 2 1 17 17 O 1.21276 * 120.00061 * 359.97438 * 16 15 2 18 18 C 1.50705 * 119.99867 * 179.72366 * 16 15 2 19 19 C 1.52992 * 109.47218 * 300.27595 * 18 16 15 20 20 C 1.53003 * 109.47354 * 179.97438 * 19 18 16 21 21 C 1.53004 * 109.46710 * 59.99757 * 20 19 18 22 22 F 1.39899 * 109.46953 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.46836 * 60.00389 * 21 20 19 24 24 C 1.53001 * 109.47313 * 300.00011 * 21 20 19 25 25 C 1.53003 * 109.46911 * 60.00503 * 24 21 20 26 26 H 1.08998 * 109.47225 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46551 * 299.99598 * 1 2 3 28 28 H 1.08999 * 109.47009 * 59.99513 * 1 2 3 29 29 H 1.08996 * 109.46783 * 294.99921 * 4 2 1 30 30 H 1.09000 * 109.47102 * 54.99505 * 4 2 1 31 31 H 1.09000 * 109.46699 * 94.94856 * 6 5 4 32 32 H 1.09001 * 109.46948 * 214.94933 * 6 5 4 33 33 H 1.08997 * 109.47343 * 334.95242 * 6 5 4 34 34 H 0.97005 * 119.99898 * 180.02562 * 10 9 7 35 35 H 0.97002 * 120.00234 * 265.00073 * 15 2 1 36 36 H 1.09003 * 109.46825 * 60.27511 * 18 16 15 37 37 H 1.09003 * 109.47151 * 300.00272 * 19 18 16 38 38 H 1.09004 * 109.47394 * 59.99589 * 19 18 16 39 39 H 1.08997 * 109.46573 * 300.00364 * 20 19 18 40 40 H 1.08998 * 109.47127 * 179.97438 * 20 19 18 41 41 H 1.08995 * 109.47053 * 300.00514 * 24 21 20 42 42 H 1.08996 * 109.47003 * 180.02562 * 24 21 20 43 43 H 1.08998 * 109.47246 * 180.02562 * 25 24 21 44 44 H 1.08997 * 109.47348 * 59.99179 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 3.5001 -0.8266 1.1904 6 6 4.1258 -1.9922 0.5610 7 6 4.2800 0.1645 1.7240 8 1 3.8846 0.8045 2.4990 9 6 5.5785 0.3468 1.2686 10 7 5.9910 -0.2806 0.1877 11 14 6.7405 1.4826 2.1900 12 1 6.0392 2.0624 3.3635 13 1 7.9232 0.7122 2.6517 14 1 7.1834 2.5757 1.2876 15 7 2.0184 -0.6906 -1.1963 16 6 2.1471 -0.0181 -2.3572 17 8 1.8583 1.1585 -2.4117 18 6 2.6553 -0.7270 -3.5862 19 6 4.0567 -1.2775 -3.3146 20 6 4.5724 -1.9977 -4.5621 21 6 4.6290 -1.0136 -5.7322 22 9 5.1011 -1.6719 -6.8728 23 9 5.4907 0.0413 -5.4130 24 6 3.2275 -0.4630 -6.0039 25 6 2.7119 0.2572 -4.7563 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.7517 -0.1586 2.1369 30 1 1.6054 -1.7199 1.2950 31 1 4.3598 -1.7618 -0.4784 32 1 5.0433 -2.2435 1.0930 33 1 3.4397 -2.8382 0.6000 34 1 6.8986 -0.1535 -0.1303 35 1 2.2491 -1.6318 -1.1528 36 1 1.9840 -1.5488 -3.8352 37 1 4.7279 -0.4556 -3.0654 38 1 4.0163 -1.9789 -2.4811 39 1 3.9010 -2.8195 -4.8107 40 1 5.5710 -2.3895 -4.3687 41 1 2.5562 -1.2849 -6.2525 42 1 3.2678 0.2377 -6.8378 43 1 1.7133 0.6490 -4.9497 44 1 3.3833 1.0790 -4.5077 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754329393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:04 Heat of formation + Delta-G solvation = -156.708832 kcal Electronic energy + Delta-G solvation = -27111.313136 eV Core-core repulsion = 23119.313283 eV Total energy + Delta-G solvation = -3991.999852 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.94664 -47.94928 -41.07509 -38.47682 -37.63193 -35.69829 -33.19800 -32.31922 -31.89657 -30.56313 -27.93899 -27.36762 -24.92447 -24.09563 -23.36614 -21.96814 -21.37103 -20.72509 -18.76545 -18.40790 -18.03600 -17.81371 -17.23313 -17.04323 -16.70828 -15.87904 -15.50871 -15.44925 -15.14568 -15.02374 -14.71639 -14.44778 -14.38866 -14.22222 -13.97151 -13.73292 -13.53031 -13.26384 -13.15768 -13.01780 -12.87065 -12.73334 -12.70094 -12.51961 -12.49655 -12.25939 -12.17075 -11.99695 -11.80116 -11.69897 -11.64732 -11.07888 -10.64969 -10.57181 -9.83425 -8.66185 -7.79326 -5.24464 1.41032 1.44857 1.51951 1.80136 2.44438 2.52302 2.82363 3.14754 3.34257 3.37128 3.43931 3.75672 3.80329 3.91739 4.02618 4.11421 4.23625 4.32890 4.34966 4.46323 4.57819 4.61278 4.72199 4.80344 4.82786 4.88105 4.89106 4.94385 4.99355 5.04220 5.04488 5.21258 5.25550 5.35389 5.42682 5.42924 5.69016 5.80220 5.88803 6.37705 6.78134 7.22048 7.47948 7.94211 8.33884 9.21522 Molecular weight = 304.17amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.005429 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.069480 B = 5155.792763 C = 6419.231165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.121 3.879 3 H 0.031 0.969 4 C 0.143 3.857 5 N -0.610 5.610 6 C 0.169 3.831 7 C -0.258 4.258 8 H 0.062 0.938 9 C -0.044 4.044 10 N -0.919 5.919 11 Si 0.951 3.049 12 H -0.270 1.270 13 H -0.290 1.290 14 H -0.304 1.304 15 N -0.692 5.692 16 C 0.512 3.488 17 O -0.597 6.597 18 C -0.099 4.099 19 C -0.098 4.098 20 C -0.145 4.145 21 C 0.274 3.726 22 F -0.208 7.208 23 F -0.222 7.222 24 C -0.144 4.144 25 C -0.094 4.094 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.025 0.975 32 H 0.007 0.993 33 H 0.035 0.965 34 H 0.242 0.758 35 H 0.404 0.596 36 H 0.141 0.859 37 H 0.035 0.965 38 H 0.088 0.912 39 H 0.134 0.866 40 H 0.084 0.916 41 H 0.132 0.868 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.248 -8.626 -10.365 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.050 0.950 4 C 0.016 3.984 5 N -0.333 5.333 6 C 0.024 3.976 7 C -0.389 4.389 8 H 0.080 0.920 9 C -0.241 4.241 10 N -0.565 5.565 11 Si 0.781 3.219 12 H -0.194 1.194 13 H -0.217 1.217 14 H -0.232 1.232 15 N -0.341 5.341 16 C 0.300 3.700 17 O -0.479 6.479 18 C -0.120 4.120 19 C -0.136 4.136 20 C -0.183 4.183 21 C 0.238 3.762 22 F -0.189 7.189 23 F -0.203 7.203 24 C -0.181 4.181 25 C -0.132 4.132 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.026 0.974 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.240 0.760 36 H 0.159 0.841 37 H 0.054 0.946 38 H 0.106 0.894 39 H 0.152 0.848 40 H 0.103 0.897 41 H 0.150 0.850 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.255 -7.816 -10.432 16.585 hybrid contribution 1.721 0.970 0.518 2.042 sum -8.534 -6.846 -9.914 14.764 Atomic orbital electron populations 1.22004 0.93708 1.02872 1.01736 1.21630 0.94003 0.96269 0.86742 0.95031 1.21351 0.83344 0.99197 0.94528 1.44050 1.00756 1.20435 1.68050 1.20748 0.94096 0.85960 0.96765 1.19409 0.95118 1.10674 1.13663 0.92032 1.25577 1.00311 1.00737 0.97427 1.70138 1.16708 1.46602 1.23076 0.85442 0.79588 0.78629 0.78213 1.19431 1.21673 1.23166 1.45770 1.65528 1.13990 1.08833 1.21025 0.76439 0.86781 0.85791 1.90620 1.53117 1.18043 1.86100 1.21430 0.98416 0.99988 0.92185 1.21325 0.94308 1.00123 0.97842 1.22504 1.05409 0.98247 0.92152 1.21610 0.88270 0.82591 0.83707 1.92977 1.90496 1.81687 1.53768 1.92980 1.73843 1.60310 1.93213 1.22517 0.92606 1.03662 0.99362 1.21224 1.02622 0.96997 0.92384 0.90339 0.90924 0.94149 0.92312 0.90473 0.95661 0.97387 0.94621 0.94857 0.75976 0.84093 0.94606 0.89399 0.84777 0.89707 0.85006 0.88698 0.89222 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.48 71.98 0.68 -3.21 16 2 C 0.12 4.31 2.88 44.99 0.13 4.44 16 3 H 0.03 1.46 7.58 -2.39 -0.02 1.44 16 4 C 0.14 5.08 5.33 86.38 0.46 5.54 16 5 N -0.61 -27.89 2.78 -726.94 -2.02 -29.91 16 6 C 0.17 7.26 7.59 127.77 0.97 8.23 16 7 C -0.26 -13.81 9.66 84.03 0.81 -12.99 16 8 H 0.06 3.29 7.85 -2.91 -0.02 3.27 16 9 C -0.04 -2.46 5.14 84.86 0.44 -2.03 16 10 N -0.92 -52.37 10.64 21.65 0.23 -52.14 16 11 Si 0.95 46.10 29.57 68.60 2.03 48.13 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 14 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 15 N -0.69 -22.92 4.31 -442.51 -1.91 -24.83 16 16 C 0.51 18.19 7.12 87.66 0.62 18.82 16 17 O -0.60 -26.59 15.65 -3.02 -0.05 -26.64 16 18 C -0.10 -2.55 2.53 -11.54 -0.03 -2.58 16 19 C -0.10 -2.79 4.97 30.59 0.15 -2.64 16 20 C -0.15 -3.18 5.45 30.60 0.17 -3.01 16 21 C 0.27 6.74 2.10 30.60 0.06 6.80 16 22 F -0.21 -5.15 17.06 44.97 0.77 -4.38 16 23 F -0.22 -7.41 16.02 44.97 0.72 -6.69 16 24 C -0.14 -2.76 5.46 30.60 0.17 -2.60 16 25 C -0.09 -2.42 4.37 30.60 0.13 -2.29 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 2.08 8.03 -2.39 -0.02 2.06 16 30 H 0.08 2.22 7.86 -2.39 -0.02 2.20 16 31 H 0.03 1.14 5.56 -2.39 -0.01 1.13 16 32 H 0.01 0.37 7.33 -2.39 -0.02 0.35 16 33 H 0.04 1.21 7.84 -2.39 -0.02 1.19 16 34 H 0.24 13.79 8.31 -92.70 -0.77 13.02 16 35 H 0.40 11.55 6.59 -92.71 -0.61 10.94 16 36 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.03 1.40 7.80 -2.39 -0.02 1.38 16 38 H 0.09 2.49 6.21 -2.38 -0.01 2.48 16 39 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.09 2.16 8.10 -2.39 -0.02 2.14 16 44 H 0.04 1.37 7.76 -2.39 -0.02 1.36 16 Total: -1.00 -71.64 351.39 4.93 -66.72 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.38 Total: 17.26 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 4.77 Total: 12.48 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -3.69 Total: -106.87 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 9 Polarization: -12.56 SS G_CDS: 1.49 Total: -11.08 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -71.64 4.93 -66.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.993 kcal (2) G-P(sol) polarization free energy of solvation -71.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds