Wall clock time and date at job start Tue Mar 31 2020 08:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46698 * 2 1 4 4 C 1.52993 * 109.47200 * 240.00070 * 2 1 3 5 5 N 1.46500 * 109.47054 * 185.00103 * 4 2 1 6 6 C 1.46506 * 119.99541 * 270.00165 * 5 4 2 7 7 C 1.36933 * 120.00508 * 89.99681 * 5 4 2 8 8 H 1.07999 * 119.99757 * 22.03341 * 7 5 4 9 9 C 1.38806 * 120.00137 * 202.02914 * 7 5 4 10 10 N 1.31616 * 120.00549 * 11.43258 * 9 7 5 11 11 Si 1.86807 * 119.99994 * 191.43351 * 9 7 5 12 12 H 1.48502 * 109.47163 * 90.00117 * 11 9 7 13 13 H 1.48501 * 109.47245 * 210.00157 * 11 9 7 14 14 H 1.48498 * 109.47047 * 330.00174 * 11 9 7 15 15 N 1.46497 * 109.46900 * 119.99819 * 2 1 3 16 16 C 1.34783 * 119.99844 * 275.00072 * 15 2 1 17 17 O 1.21274 * 120.00319 * 0.02562 * 16 15 2 18 18 C 1.50706 * 119.99774 * 180.02562 * 16 15 2 19 19 C 1.52994 * 109.47045 * 300.00290 * 18 16 15 20 20 C 1.53006 * 109.46912 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47072 * 59.99946 * 20 19 18 22 22 F 1.39898 * 109.46922 * 180.02562 * 21 20 19 23 23 F 1.39896 * 109.47009 * 60.00222 * 21 20 19 24 24 C 1.52998 * 109.47133 * 300.00135 * 21 20 19 25 25 C 1.52996 * 109.47218 * 59.99967 * 24 21 20 26 26 H 1.09000 * 109.46698 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47736 * 299.99931 * 1 2 3 28 28 H 1.09002 * 109.47124 * 60.00266 * 1 2 3 29 29 H 1.09004 * 109.47416 * 304.99876 * 4 2 1 30 30 H 1.08999 * 109.47484 * 64.99563 * 4 2 1 31 31 H 1.08995 * 109.47407 * 94.04095 * 6 5 4 32 32 H 1.09001 * 109.46918 * 214.03936 * 6 5 4 33 33 H 1.08997 * 109.47484 * 334.03330 * 6 5 4 34 34 H 0.97001 * 120.01125 * 179.97438 * 10 9 7 35 35 H 0.96993 * 120.00024 * 94.73098 * 15 2 1 36 36 H 1.09005 * 109.46986 * 60.00313 * 18 16 15 37 37 H 1.09005 * 109.47247 * 299.99863 * 19 18 16 38 38 H 1.09004 * 109.47589 * 59.99992 * 19 18 16 39 39 H 1.08997 * 109.47185 * 299.99725 * 20 19 18 40 40 H 1.09002 * 109.47228 * 180.02562 * 20 19 18 41 41 H 1.09005 * 109.47071 * 299.99995 * 24 21 20 42 42 H 1.08995 * 109.47345 * 180.02562 * 24 21 20 43 43 H 1.08998 * 109.47316 * 180.02562 * 25 24 21 44 44 H 1.08992 * 109.47312 * 59.99810 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.3343 0.2342 -1.7611 7 6 4.0851 -1.9157 -0.6022 8 1 3.5323 -2.8383 -0.5041 9 6 5.3886 -1.8343 -0.1320 10 7 5.9844 -0.6641 -0.0434 11 14 6.2973 -3.3857 0.3750 12 1 7.0186 -3.9424 -0.7977 13 1 7.2720 -3.0605 1.4470 14 1 5.3236 -4.3875 0.8785 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0181 2.3572 17 8 1.8581 1.1585 2.4117 18 6 2.6498 -0.7284 3.5876 19 6 1.7063 -1.8826 3.9315 20 6 2.2172 -2.6041 5.1803 21 6 2.2690 -1.6214 6.3517 22 9 2.7367 -2.2809 7.4934 23 9 0.9865 -1.1186 6.5956 24 6 3.2125 -0.4671 6.0078 25 6 2.7016 0.2544 4.7590 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6055 -1.7198 -1.2952 30 1 1.7517 -0.1583 -2.1369 31 1 4.5995 0.9475 -0.9808 32 1 5.2419 -0.2022 -2.1781 33 1 3.7823 0.7464 -2.5492 34 1 6.8951 -0.6070 0.2855 35 1 2.2453 -1.6326 1.1536 36 1 3.6492 -1.1201 3.3980 37 1 0.7069 -1.4909 4.1210 38 1 1.6698 -2.5831 3.0971 39 1 3.2164 -2.9960 4.9903 40 1 1.5453 -3.4268 5.4251 41 1 4.2118 -0.8589 5.8178 42 1 3.2497 0.2329 6.8425 43 1 3.3740 1.0764 4.5137 44 1 1.7024 0.6461 4.9490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754329394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:09 Heat of formation + Delta-G solvation = -139.737628 kcal Electronic energy + Delta-G solvation = -26973.833871 eV Core-core repulsion = 22982.569945 eV Total energy + Delta-G solvation = -3991.263926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.170 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.97916 -46.96543 -39.63912 -37.19619 -36.07189 -33.99420 -31.68017 -31.04719 -30.54156 -29.31112 -26.19958 -25.64561 -23.66399 -23.16353 -21.79727 -20.68262 -19.90258 -19.41829 -17.44038 -16.98656 -16.82102 -16.42646 -16.24036 -15.53460 -14.92471 -14.65266 -14.10289 -13.98111 -13.85002 -13.58492 -13.46166 -13.26676 -13.06893 -12.87135 -12.79785 -12.46782 -12.40469 -12.14055 -11.77543 -11.72103 -11.50159 -11.41604 -11.29558 -11.21771 -10.92141 -10.75101 -10.61890 -10.41778 -10.26439 -10.14216 -10.09330 -9.88036 -9.09909 -8.62893 -8.24782 -6.83476 -5.79286 -3.25597 3.27261 3.29945 3.34676 3.37542 3.72575 3.82720 4.03855 4.31478 4.38262 4.40486 4.85624 4.95144 5.05943 5.21369 5.23094 5.30158 5.38887 5.47319 5.59474 5.64113 5.70101 5.77045 5.80104 5.85562 5.95283 5.96773 6.03781 6.15279 6.24216 6.25189 6.38274 6.44141 6.52260 6.72627 6.87961 7.30464 7.35435 7.64903 7.75680 8.29793 8.32707 8.96429 9.14947 9.79124 10.29444 11.24644 Molecular weight = 304.17amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.005437 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.110906 B = 5148.225844 C = 6402.561876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.076 0.924 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.164 3.836 7 C -0.255 4.255 8 H 0.066 0.934 9 C 0.006 3.994 10 N -0.899 5.899 11 Si 0.896 3.104 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.279 1.279 15 N -0.686 5.686 16 C 0.525 3.475 17 O -0.561 6.561 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.156 4.156 21 C 0.287 3.713 22 F -0.206 7.206 23 F -0.200 7.200 24 C -0.158 4.158 25 C -0.096 4.096 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.027 0.973 32 H 0.045 0.955 33 H -0.005 1.005 34 H 0.252 0.748 35 H 0.403 0.597 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.974 -2.606 7.805 11.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.385 4.385 8 H 0.084 0.916 9 C -0.193 4.193 10 N -0.544 5.544 11 Si 0.726 3.274 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.335 5.335 16 C 0.310 3.690 17 O -0.441 6.441 18 C -0.134 4.134 19 C -0.146 4.146 20 C -0.194 4.194 21 C 0.251 3.749 22 F -0.187 7.187 23 F -0.181 7.181 24 C -0.196 4.196 25 C -0.133 4.133 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.014 0.986 34 H 0.063 0.937 35 H 0.239 0.761 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.995 -1.741 7.881 11.361 hybrid contribution 0.818 -1.282 0.503 1.602 sum -7.177 -3.022 8.385 11.443 Atomic orbital electron populations 1.22155 0.96986 1.01175 1.01509 1.21796 0.91708 0.98388 0.87126 0.90627 1.21180 0.85930 0.97849 0.93672 1.43890 0.98916 1.22628 1.66649 1.20792 0.92987 0.90450 0.93804 1.19074 0.96986 0.89483 1.32944 0.91614 1.24989 0.98597 0.96105 0.99574 1.70074 1.13155 1.21556 1.49571 0.86405 0.79993 0.82917 0.78079 1.21540 1.21769 1.20466 1.45705 1.65045 1.14191 1.08543 1.20142 0.77303 0.86976 0.84552 1.90619 1.51699 1.16174 1.85578 1.21384 1.01569 0.96394 0.94032 1.21485 0.99418 0.96781 0.96932 1.22515 1.05184 0.97951 0.93738 1.21178 0.79070 0.91779 0.82908 1.92991 1.88690 1.82631 1.54401 1.92984 1.41441 1.88557 1.95107 1.22561 0.99557 0.96738 1.00719 1.21271 1.03355 0.97623 0.91095 0.93075 0.92972 0.92360 0.93410 0.93058 0.95449 0.93657 0.98617 0.93747 0.76145 0.87702 0.90555 0.89760 0.88372 0.89337 0.88613 0.89418 0.89666 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 37.16 0.35 -2.00 16 2 C 0.12 2.13 2.88 -67.93 -0.20 1.94 16 3 H 0.08 1.61 7.58 -51.93 -0.39 1.21 16 4 C 0.14 2.64 5.36 -4.05 -0.02 2.62 16 5 N -0.60 -13.79 2.82 -181.12 -0.51 -14.30 16 6 C 0.16 3.92 9.01 59.85 0.54 4.46 16 7 C -0.26 -6.22 8.03 -15.06 -0.12 -6.34 16 8 H 0.07 1.54 7.84 -52.49 -0.41 1.13 16 9 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 10 N -0.90 -24.60 10.57 55.49 0.59 -24.01 16 11 Si 0.90 20.11 29.57 -169.99 -5.03 15.09 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 15 N -0.69 -12.45 4.37 -53.81 -0.24 -12.68 16 16 C 0.52 9.75 7.12 -10.98 -0.08 9.67 16 17 O -0.56 -12.17 15.65 5.56 0.09 -12.09 16 18 C -0.11 -1.67 2.53 -91.77 -0.23 -1.91 16 19 C -0.11 -1.32 4.98 -26.73 -0.13 -1.45 16 20 C -0.16 -1.70 5.45 -26.73 -0.15 -1.85 16 21 C 0.29 3.49 2.10 -26.73 -0.06 3.44 16 22 F -0.21 -2.68 17.06 2.25 0.04 -2.64 16 23 F -0.20 -2.72 16.03 2.25 0.04 -2.68 16 24 C -0.16 -1.84 5.45 -26.73 -0.15 -1.99 16 25 C -0.10 -1.33 4.37 -26.73 -0.12 -1.45 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.84 8.03 -51.93 -0.42 0.42 16 30 H 0.05 0.88 7.86 -51.93 -0.41 0.47 16 31 H 0.03 0.72 7.44 -51.93 -0.39 0.34 16 32 H 0.04 1.16 7.15 -51.93 -0.37 0.79 16 33 H 0.00 -0.10 7.85 -51.93 -0.41 -0.51 16 34 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.40 7.12 6.82 -40.82 -0.28 6.84 16 36 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.08 0.95 7.80 -51.93 -0.41 0.54 16 38 H 0.08 0.96 7.56 -51.93 -0.39 0.56 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 44 H 0.08 1.14 7.76 -51.93 -0.40 0.74 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -29.33 354.53 -7.34 -36.67 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.21 Total: 6.08 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -0.44 Total: 5.23 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.16 Total: -51.00 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.07 Total: -5.33 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.33 -7.34 -36.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.067 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds