Wall clock time and date at job start Tue Mar 31 2020 08:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99997 * 2 1 4 4 C 1.38211 * 119.99784 * 180.23526 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 C 1.50703 * 120.00325 * 180.27920 * 5 4 3 7 7 N 1.46500 * 109.46887 * 89.99921 * 6 5 4 8 8 C 1.46497 * 120.00381 * 270.00468 * 7 6 5 9 9 C 1.34787 * 119.99769 * 90.00330 * 7 6 5 10 10 O 1.21587 * 119.99926 * 0.02562 * 9 7 6 11 11 N 1.34773 * 119.99910 * 179.97438 * 9 7 6 12 12 C 1.46504 * 119.99598 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46563 * 180.02562 * 12 11 9 14 14 C 1.53009 * 109.46716 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.46970 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00366 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99781 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00160 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47212 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47129 * 119.99923 * 19 17 15 22 22 H 1.48504 * 109.46820 * 239.99933 * 19 17 15 23 23 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 24 24 C 1.38212 * 119.99856 * 179.71368 * 2 1 3 25 25 C 1.50706 * 120.00275 * 0.02562 * 24 2 1 26 26 H 1.09003 * 109.47135 * 270.28406 * 1 2 3 27 27 H 1.09000 * 109.46785 * 30.28531 * 1 2 3 28 28 H 1.09002 * 109.47199 * 150.28503 * 1 2 3 29 29 H 1.07998 * 119.99823 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 31 31 H 1.08988 * 109.47584 * 210.00451 * 6 5 4 32 32 H 1.09000 * 109.47013 * 330.00967 * 6 5 4 33 33 H 1.09002 * 109.47144 * 90.00382 * 8 7 6 34 34 H 1.09005 * 109.47268 * 209.99783 * 8 7 6 35 35 H 1.08996 * 109.47094 * 330.00066 * 8 7 6 36 36 H 0.96995 * 120.00594 * 0.02562 * 11 9 7 37 37 H 1.08997 * 109.47388 * 300.00215 * 12 11 9 38 38 H 1.09001 * 109.46666 * 60.00515 * 12 11 9 39 39 H 1.08996 * 109.47882 * 300.00133 * 13 12 11 40 40 H 1.09001 * 109.47297 * 60.00793 * 13 12 11 41 41 H 1.08997 * 109.47181 * 300.00075 * 14 13 12 42 42 H 1.09001 * 109.46719 * 60.00280 * 14 13 12 43 43 H 0.96998 * 120.00195 * 180.02562 * 18 17 15 44 44 H 1.07997 * 120.00449 * 180.02562 * 23 5 4 45 45 H 1.09004 * 109.46442 * 270.02096 * 25 24 2 46 46 H 1.09000 * 109.46849 * 30.01503 * 25 24 2 47 47 H 1.08993 * 109.47102 * 150.01800 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 0.0000 0.0011 6 6 5.7788 -0.0001 0.0021 7 7 6.2661 0.0063 1.3836 8 6 6.5098 1.2781 2.0686 9 6 6.4903 -1.1581 2.0245 10 8 6.2885 -2.2137 1.4558 11 7 6.9391 -1.1523 3.2953 12 6 7.1822 -2.4179 3.9920 13 6 7.6828 -2.1318 5.4092 14 6 7.9373 -3.4536 6.1366 15 6 8.4297 -3.1719 7.5328 16 1 8.5488 -2.1521 7.8679 17 6 8.7282 -4.2161 8.3823 18 7 8.5827 -5.4578 7.9744 19 14 9.3379 -3.8668 10.1131 20 1 9.4139 -2.3989 10.3245 21 1 8.3989 -4.4613 11.0981 22 1 10.6862 -4.4628 10.2926 23 6 3.5807 -1.1970 0.0065 24 6 2.1981 -1.1970 0.0060 25 6 1.4446 -2.5021 0.0119 26 1 -0.3633 0.0051 1.0277 27 1 -0.3633 0.8874 -0.5183 28 1 -0.3634 -0.8925 -0.5094 29 1 1.6583 2.1326 -0.0004 30 1 4.1205 2.1326 -0.0088 31 1 6.1424 -0.8923 -0.5074 32 1 6.1425 0.8876 -0.5155 33 1 5.6011 1.5950 2.5804 34 1 7.3112 1.1511 2.7965 35 1 6.7984 2.0344 1.3387 36 1 7.1005 -0.3102 3.7489 37 1 6.2551 -2.9887 4.0428 38 1 7.9334 -2.9925 3.4500 39 1 8.6099 -1.5609 5.3589 40 1 6.9313 -1.5575 5.9509 41 1 7.0104 -4.0249 6.1871 42 1 8.6890 -4.0276 5.5948 43 1 8.7923 -6.1924 8.5722 44 1 4.1206 -2.1323 0.0116 45 1 1.2623 -2.8116 1.0411 46 1 0.4925 -2.3743 -0.5031 47 1 2.0340 -3.2642 -0.4977 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454456607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:31 Heat of formation + Delta-G solvation = -24.177185 kcal Electronic energy + Delta-G solvation = -24209.263894 eV Core-core repulsion = 20777.240576 eV Total energy + Delta-G solvation = -3432.023319 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.32791 -39.42066 -36.11874 -35.19499 -33.78141 -33.10453 -32.29299 -31.08143 -28.99900 -27.29368 -26.99465 -26.31946 -24.58075 -22.82265 -22.15871 -20.61442 -20.49060 -19.45048 -17.84601 -16.61110 -16.35013 -16.08266 -15.87161 -15.44750 -14.91121 -14.58917 -14.42674 -14.28904 -14.04572 -13.80347 -13.25235 -13.18614 -13.01229 -12.92664 -12.86162 -12.67122 -12.26560 -12.10398 -11.85926 -11.80526 -11.73664 -11.65436 -11.15155 -10.97674 -10.91103 -10.69202 -10.55464 -10.03002 -9.84515 -9.43457 -9.10015 -8.92830 -8.82175 -8.61607 -8.45454 -8.36506 -6.00919 -4.03829 1.14115 1.31322 2.78500 3.30386 3.37776 3.37940 3.41354 3.66091 4.12657 4.45267 4.59590 4.62308 4.74823 4.86105 4.89552 4.93512 5.11264 5.22288 5.23940 5.30862 5.34923 5.43469 5.48096 5.52483 5.55878 5.65466 5.66819 5.71429 5.75949 5.84258 6.03846 6.07905 6.21123 6.31333 6.35438 6.51288 6.57239 6.57974 6.64810 6.83083 6.93693 7.04726 7.04770 7.65462 7.78345 7.98292 8.10545 8.39346 8.77382 9.03123 9.60266 11.10459 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.019021 B = 0.002450 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.691153 B =11426.074720 C =12007.758653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.110 4.110 5 C -0.109 4.109 6 C 0.175 3.825 7 N -0.633 5.633 8 C 0.080 3.920 9 C 0.703 3.297 10 O -0.589 6.589 11 N -0.741 5.741 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.087 4.087 24 C -0.090 4.090 25 C -0.118 4.118 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.393 0.607 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.260 0.740 44 H 0.130 0.870 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.584 16.065 -18.924 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.128 4.128 5 C -0.110 4.110 6 C 0.051 3.949 7 N -0.371 5.371 8 C -0.063 4.063 9 C 0.404 3.596 10 O -0.467 6.467 11 N -0.397 5.397 12 C 0.011 3.989 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.106 4.106 24 C -0.091 4.091 25 C -0.174 4.174 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.228 0.772 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.148 0.852 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.678 15.079 -19.260 27.551 hybrid contribution 0.437 0.668 1.361 1.578 sum -12.241 15.747 -17.899 26.799 Atomic orbital electron populations 1.20855 0.91515 1.02644 1.02313 1.19769 0.95853 0.92765 1.00391 1.20924 0.94143 0.97230 1.01916 1.20948 0.94092 0.97222 1.00555 1.20255 0.96229 0.93269 1.01262 1.20170 0.89137 1.03627 0.81917 1.47046 1.70579 1.05036 1.14396 1.21714 1.00976 0.85748 0.97888 1.15939 0.78252 0.83620 0.81748 1.90882 1.59238 1.29607 1.66958 1.45536 1.70881 1.10724 1.12537 1.21502 1.00738 0.83584 0.93031 1.21886 0.99675 1.02040 0.92208 1.19030 0.97293 0.90532 0.94516 1.21242 1.44162 0.92656 0.97867 0.92621 1.25034 0.95734 0.95130 0.98617 1.69974 1.48884 0.98288 1.36130 0.86533 0.78465 0.78332 0.84629 1.19777 1.21002 1.21005 1.21138 0.93244 0.98440 0.97751 1.19806 0.93795 0.94895 1.00556 1.20860 0.99831 0.94164 1.02537 0.91224 0.91808 0.91190 0.86354 0.86437 0.88990 0.89985 0.92836 0.91289 0.90982 0.77186 0.92039 0.91972 0.92824 0.92840 0.96256 0.96238 0.92987 0.85205 0.91080 0.91365 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.60 36.01 0.35 -0.53 16 2 C -0.09 -0.89 5.88 -104.62 -0.62 -1.51 16 3 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 4 C -0.11 -1.06 9.70 -39.58 -0.38 -1.45 16 5 C -0.11 -1.23 5.46 -104.62 -0.57 -1.80 16 6 C 0.17 1.86 5.58 -5.19 -0.03 1.84 16 7 N -0.63 -7.58 2.86 -188.74 -0.54 -8.12 16 8 C 0.08 0.67 10.25 59.85 0.61 1.28 16 9 C 0.70 11.26 8.28 -86.91 -0.72 10.54 16 10 O -0.59 -11.50 15.45 5.29 0.08 -11.42 16 11 N -0.74 -11.42 5.42 -65.22 -0.35 -11.77 16 12 C 0.13 2.48 5.67 -4.04 -0.02 2.45 16 13 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 14 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.09 -1.11 9.36 -39.58 -0.37 -1.48 16 24 C -0.09 -1.04 5.88 -104.62 -0.62 -1.65 16 25 C -0.12 -1.12 9.60 36.01 0.35 -0.77 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.07 0.47 5.95 -51.93 -0.31 0.16 16 29 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.09 1.11 7.36 -51.94 -0.38 0.73 16 32 H 0.08 0.63 7.84 -51.93 -0.41 0.22 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.54 6.36 -51.93 -0.33 0.20 16 35 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 36 H 0.39 4.99 6.20 -40.82 -0.25 4.74 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.13 1.85 7.58 -52.49 -0.40 1.45 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.52 5.95 -51.93 -0.31 0.21 16 47 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -33.64 384.39 -10.23 -43.87 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.83 Total: 1.51 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -3.10 Total: -10.18 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.16 Total: -46.14 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.64 -10.23 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454456607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.692 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds