Wall clock time and date at job start Tue Mar 31 2020 08:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47402 * 85.02067 * 8 7 2 10 10 N 1.46499 * 109.47525 * 179.97438 * 9 8 7 11 11 C 1.34770 * 119.99951 * 180.02562 * 10 9 8 12 12 O 1.21587 * 120.00379 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99725 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00361 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47443 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47110 * 300.00140 * 15 14 13 17 17 C 1.53007 * 109.47287 * 59.99863 * 15 14 13 18 18 C 1.50700 * 109.47156 * 180.02562 * 15 14 13 19 19 H 1.07997 * 119.99687 * 359.97438 * 18 15 14 20 20 C 1.37876 * 119.99803 * 180.02562 * 18 15 14 21 21 N 1.31519 * 120.00475 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 119.99797 * 180.02562 * 20 18 15 23 23 H 1.48494 * 109.47428 * 89.99694 * 22 20 18 24 24 H 1.48502 * 109.46869 * 209.99850 * 22 20 18 25 25 H 1.48502 * 109.46898 * 329.99258 * 22 20 18 26 26 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 27 27 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 28 28 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 29 29 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 31 31 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 32 32 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 33 33 H 1.09003 * 109.47025 * 205.01748 * 8 7 2 34 34 H 1.08991 * 109.47184 * 325.01693 * 8 7 2 35 35 H 1.08997 * 109.46738 * 300.00295 * 9 8 7 36 36 H 1.08999 * 109.46965 * 59.99689 * 9 8 7 37 37 H 0.97007 * 119.99755 * 359.97438 * 10 9 8 38 38 H 0.97007 * 119.99981 * 359.97438 * 13 11 10 39 39 H 1.09000 * 109.46776 * 300.00008 * 14 13 11 40 40 H 1.08999 * 109.46613 * 59.99888 * 14 13 11 41 41 H 1.09005 * 109.47248 * 60.00326 * 16 15 14 42 42 H 1.09003 * 109.47340 * 179.97438 * 16 15 14 43 43 H 1.09000 * 109.47507 * 299.99830 * 16 15 14 44 44 H 1.09005 * 109.46677 * 60.00128 * 17 15 14 45 45 H 1.09001 * 109.46943 * 179.97438 * 17 15 14 46 46 H 1.08996 * 109.47296 * 300.00128 * 17 15 14 47 47 H 0.96996 * 119.99744 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0817 -2.8815 -1.4365 10 7 0.3498 -4.1505 -1.4366 11 6 -0.0738 -4.6840 -2.5995 12 8 0.1510 -4.1119 -3.6485 13 7 -0.7467 -5.8518 -2.5996 14 6 -1.2078 -6.4315 -3.8635 15 6 -1.9372 -7.7473 -3.5852 16 6 -0.9826 -8.7233 -2.8945 17 6 -3.1398 -7.4816 -2.6772 18 6 -2.4109 -8.3439 -4.8854 19 1 -2.2119 -7.8352 -5.8171 20 6 -3.0991 -9.5386 -4.8854 21 7 -3.3419 -10.1578 -3.7508 22 14 -3.6857 -10.2785 -6.4973 23 1 -2.6325 -11.1708 -7.0447 24 1 -4.9246 -11.0623 -6.2603 25 1 -3.9665 -9.1905 -7.4682 26 1 -0.3633 0.0004 1.0276 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6582 2.1327 -0.0004 30 1 4.1203 2.1329 0.0001 31 1 5.3517 0.0002 0.0005 32 1 4.1207 -2.1321 0.0064 33 1 2.0693 -3.2822 0.4356 34 1 0.5336 -2.3956 0.5893 35 1 0.4571 -2.1013 -1.8716 36 1 1.9929 -2.9879 -2.0253 37 1 0.1708 -4.6072 -0.5997 38 1 -0.9258 -6.3084 -1.7626 39 1 -1.8875 -5.7359 -4.3557 40 1 -0.3510 -6.6212 -4.5101 41 1 -0.6397 -8.2920 -1.9540 42 1 -1.5024 -9.6606 -2.6957 43 1 -0.1259 -8.9127 -3.5412 44 1 -3.8198 -6.7861 -3.1693 45 1 -3.6597 -8.4189 -2.4793 46 1 -2.7968 -7.0503 -1.7368 47 1 -3.8258 -10.9984 -3.7510 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457486708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:41 Heat of formation + Delta-G solvation = -26.831653 kcal Electronic energy + Delta-G solvation = -24239.152738 eV Core-core repulsion = 20807.014313 eV Total energy + Delta-G solvation = -3432.138425 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.01146 -39.39741 -36.58715 -35.32628 -33.34705 -33.07725 -32.28373 -30.76230 -28.67674 -27.08377 -25.69970 -25.54898 -24.85257 -23.31233 -22.14979 -20.91102 -20.46057 -18.74977 -18.05526 -16.58718 -16.22486 -15.95645 -15.77082 -15.15916 -15.08249 -14.68290 -14.27237 -13.95155 -13.69853 -13.66798 -13.38893 -13.05053 -12.84572 -12.79636 -12.52410 -12.42580 -12.15317 -11.84787 -11.68439 -11.34611 -11.18109 -11.16074 -11.09448 -10.83948 -10.67256 -10.35769 -10.18949 -9.75641 -9.60458 -9.28691 -9.05111 -8.94383 -8.81605 -8.76607 -8.39226 -8.15300 -6.00205 -4.09892 1.07824 1.14132 3.10877 3.29857 3.36715 3.41317 3.51279 3.68662 4.39772 4.50563 4.52392 4.69739 4.75764 4.82819 4.92917 4.94475 5.07036 5.26562 5.29124 5.33093 5.38754 5.44492 5.59553 5.73233 5.81348 5.89001 6.02330 6.23631 6.24907 6.26320 6.39771 6.41432 6.53328 6.66131 6.76953 6.83152 6.85251 6.93746 7.05839 7.13315 7.33544 7.44747 7.58339 7.72032 8.03576 8.14948 8.40740 8.52337 8.90095 9.08656 9.55706 11.01222 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.037778 B = 0.002200 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.993818 B =12724.916524 C =12758.530892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.110 4.110 7 C -0.080 4.080 8 C -0.094 4.094 9 C 0.146 3.854 10 N -0.756 5.756 11 C 0.697 3.303 12 O -0.600 6.600 13 N -0.733 5.733 14 C 0.151 3.849 15 C 0.055 3.945 16 C -0.130 4.130 17 C -0.130 4.130 18 C -0.504 4.504 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.393 0.607 38 H 0.393 0.607 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.005 0.995 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.006 0.994 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.493 17.791 12.906 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.078 4.078 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.144 4.144 6 C -0.128 4.128 7 C -0.080 4.080 8 C -0.131 4.131 9 C 0.022 3.978 10 N -0.413 5.413 11 C 0.397 3.603 12 O -0.479 6.479 13 N -0.388 5.388 14 C 0.027 3.973 15 C 0.055 3.945 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.542 4.542 19 H 0.076 0.924 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.226 0.774 38 H 0.228 0.772 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.025 0.975 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.584 18.133 11.952 24.160 hybrid contribution -0.366 -0.797 -0.058 0.879 sum 10.218 17.337 11.894 23.376 Atomic orbital electron populations 1.20918 0.91126 1.03449 1.02429 1.19819 0.96142 0.92596 0.99222 1.21032 0.94292 0.97451 1.01096 1.21130 0.94330 0.98057 1.00296 1.21121 0.99858 0.92524 1.00879 1.21082 0.93524 0.98318 0.99835 1.19540 0.93585 0.94021 1.00892 1.20802 1.00612 0.94605 0.97099 1.21048 0.96394 0.85019 0.95354 1.45126 1.62605 1.25488 1.08042 1.16069 0.79019 0.81535 0.83709 1.90887 1.63129 1.63306 1.30543 1.45506 1.59243 1.22200 1.11818 1.21573 0.97519 0.95618 0.82542 1.18369 0.91709 0.88837 0.95629 1.21819 0.98298 1.02755 0.95857 1.21817 0.99420 1.01880 0.95611 1.20989 1.35338 1.05912 0.92005 0.92414 1.24885 0.95685 0.96767 0.96260 1.69808 1.41104 1.16845 1.24776 0.86569 0.78143 0.79214 0.83927 1.20734 1.21307 1.19901 0.91075 0.91438 0.90760 0.86127 0.86219 0.86140 0.85929 0.90270 0.90071 0.91648 0.91757 0.77359 0.77226 0.92994 0.93006 0.97555 0.89672 0.95467 0.95466 0.89665 0.97540 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.22 36.00 0.33 -0.63 16 2 C -0.08 -0.71 5.88 -104.63 -0.62 -1.33 16 3 C -0.12 -1.02 9.70 -39.58 -0.38 -1.41 16 4 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 5 C -0.13 -1.04 10.05 -39.58 -0.40 -1.44 16 6 C -0.11 -0.97 9.68 -39.58 -0.38 -1.36 16 7 C -0.08 -0.74 5.13 -104.63 -0.54 -1.28 16 8 C -0.09 -0.79 4.76 -27.88 -0.13 -0.93 16 9 C 0.15 1.72 5.46 -4.04 -0.02 1.69 16 10 N -0.76 -9.83 5.56 -65.23 -0.36 -10.20 16 11 C 0.70 12.61 8.57 -86.92 -0.74 11.87 16 12 O -0.60 -13.40 16.34 5.29 0.09 -13.31 16 13 N -0.73 -13.31 4.96 -65.23 -0.32 -13.63 16 14 C 0.15 3.27 4.50 -4.04 -0.02 3.26 16 15 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 16 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 17 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 18 C -0.50 -13.28 8.01 -34.44 -0.28 -13.55 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 21 N -0.89 -23.66 9.35 55.43 0.52 -23.14 16 22 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.07 0.63 5.43 -51.93 -0.28 0.35 16 29 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 31 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 34 H 0.08 0.61 6.99 -51.93 -0.36 0.25 16 35 H 0.07 0.84 6.91 -51.93 -0.36 0.49 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.39 3.94 8.49 -40.82 -0.35 3.60 16 38 H 0.39 6.33 6.18 -40.82 -0.25 6.08 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 42 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 46 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 47 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -30.46 373.03 -10.18 -40.64 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -7.55 Total: 7.09 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -3.15 Total: -8.88 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.17 Total: -46.97 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.46 -10.18 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457486708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.805 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds