Wall clock time and date at job start Tue Mar 31 2020 08:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47402 * 85.02067 * 8 7 2 10 10 N 1.46499 * 109.47525 * 179.97438 * 9 8 7 11 11 C 1.34770 * 119.99951 * 180.02562 * 10 9 8 12 12 O 1.21587 * 120.00379 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99725 * 179.97438 * 11 10 9 14 14 C 1.46506 * 120.00361 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47443 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47110 * 300.00140 * 15 14 13 17 17 C 1.53007 * 109.47287 * 59.99863 * 15 14 13 18 18 C 1.50700 * 109.47156 * 180.02562 * 15 14 13 19 19 H 1.07997 * 119.99687 * 359.97438 * 18 15 14 20 20 C 1.37876 * 119.99803 * 180.02562 * 18 15 14 21 21 N 1.31519 * 120.00475 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 119.99797 * 180.02562 * 20 18 15 23 23 H 1.48494 * 109.47428 * 89.99694 * 22 20 18 24 24 H 1.48502 * 109.46869 * 209.99850 * 22 20 18 25 25 H 1.48502 * 109.46898 * 329.99258 * 22 20 18 26 26 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 27 27 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 28 28 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 29 29 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 31 31 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 32 32 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 33 33 H 1.09003 * 109.47025 * 205.01748 * 8 7 2 34 34 H 1.08991 * 109.47184 * 325.01693 * 8 7 2 35 35 H 1.08997 * 109.46738 * 300.00295 * 9 8 7 36 36 H 1.08999 * 109.46965 * 59.99689 * 9 8 7 37 37 H 0.97007 * 119.99755 * 359.97438 * 10 9 8 38 38 H 0.97007 * 119.99981 * 359.97438 * 13 11 10 39 39 H 1.09000 * 109.46776 * 300.00008 * 14 13 11 40 40 H 1.08999 * 109.46613 * 59.99888 * 14 13 11 41 41 H 1.09005 * 109.47248 * 60.00326 * 16 15 14 42 42 H 1.09003 * 109.47340 * 179.97438 * 16 15 14 43 43 H 1.09000 * 109.47507 * 299.99830 * 16 15 14 44 44 H 1.09005 * 109.46677 * 60.00128 * 17 15 14 45 45 H 1.09001 * 109.46943 * 179.97438 * 17 15 14 46 46 H 1.08996 * 109.47296 * 300.00128 * 17 15 14 47 47 H 0.96996 * 119.99744 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0817 -2.8815 -1.4365 10 7 0.3498 -4.1505 -1.4366 11 6 -0.0738 -4.6840 -2.5995 12 8 0.1510 -4.1119 -3.6485 13 7 -0.7467 -5.8518 -2.5996 14 6 -1.2078 -6.4315 -3.8635 15 6 -1.9372 -7.7473 -3.5852 16 6 -0.9826 -8.7233 -2.8945 17 6 -3.1398 -7.4816 -2.6772 18 6 -2.4109 -8.3439 -4.8854 19 1 -2.2119 -7.8352 -5.8171 20 6 -3.0991 -9.5386 -4.8854 21 7 -3.3419 -10.1578 -3.7508 22 14 -3.6857 -10.2785 -6.4973 23 1 -2.6325 -11.1708 -7.0447 24 1 -4.9246 -11.0623 -6.2603 25 1 -3.9665 -9.1905 -7.4682 26 1 -0.3633 0.0004 1.0276 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6582 2.1327 -0.0004 30 1 4.1203 2.1329 0.0001 31 1 5.3517 0.0002 0.0005 32 1 4.1207 -2.1321 0.0064 33 1 2.0693 -3.2822 0.4356 34 1 0.5336 -2.3956 0.5893 35 1 0.4571 -2.1013 -1.8716 36 1 1.9929 -2.9879 -2.0253 37 1 0.1708 -4.6072 -0.5997 38 1 -0.9258 -6.3084 -1.7626 39 1 -1.8875 -5.7359 -4.3557 40 1 -0.3510 -6.6212 -4.5101 41 1 -0.6397 -8.2920 -1.9540 42 1 -1.5024 -9.6606 -2.6957 43 1 -0.1259 -8.9127 -3.5412 44 1 -3.8198 -6.7861 -3.1693 45 1 -3.6597 -8.4189 -2.4793 46 1 -2.7968 -7.0503 -1.7368 47 1 -3.8258 -10.9984 -3.7510 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457486708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:41 Heat of formation + Delta-G solvation = -43.850863 kcal Electronic energy + Delta-G solvation = -24239.890746 eV Core-core repulsion = 20807.014313 eV Total energy + Delta-G solvation = -3432.876434 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.09914 -40.40631 -38.27822 -36.45476 -34.98817 -34.01184 -33.12466 -32.47030 -29.55608 -27.77032 -27.53662 -27.38313 -26.51454 -24.30557 -22.80547 -22.06427 -21.41889 -20.56831 -19.46579 -17.75877 -17.34845 -17.13444 -16.99501 -16.58614 -16.34054 -15.81555 -15.48236 -15.18246 -15.09709 -14.71875 -14.47655 -14.30279 -14.03278 -13.96895 -13.73780 -13.26852 -13.18772 -13.07964 -13.04298 -12.68995 -12.59725 -12.56334 -12.43073 -12.22006 -12.12447 -11.81045 -11.73274 -11.46068 -11.36491 -11.12231 -10.68562 -10.39606 -10.28532 -9.68693 -9.63718 -9.45258 -8.00873 -6.16130 0.43576 0.51304 1.43432 1.46195 1.54426 1.83398 2.22348 2.47438 2.85909 3.22642 3.43103 3.90432 3.93795 4.07712 4.11283 4.16673 4.29179 4.44586 4.45855 4.55491 4.58971 4.63332 4.73740 4.81884 4.82191 4.97394 4.98675 5.00612 5.05530 5.08682 5.13444 5.22654 5.23424 5.36991 5.40748 5.51682 5.62461 5.65196 5.65551 5.69119 5.69715 5.77153 6.10139 6.17267 6.17758 6.24249 6.45783 6.88002 7.19938 7.51315 7.66215 8.98017 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.037778 B = 0.002200 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.993818 B =12724.916524 C =12758.530892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.092 4.092 3 C -0.133 4.133 4 C -0.126 4.126 5 C -0.136 4.136 6 C -0.122 4.122 7 C -0.096 4.096 8 C -0.080 4.080 9 C 0.149 3.851 10 N -0.732 5.732 11 C 0.695 3.305 12 O -0.645 6.645 13 N -0.725 5.725 14 C 0.168 3.832 15 C 0.051 3.949 16 C -0.119 4.119 17 C -0.119 4.119 18 C -0.527 4.527 19 H 0.043 0.957 20 C 0.027 3.973 21 N -0.899 5.899 22 Si 0.945 3.055 23 H -0.279 1.279 24 H -0.282 1.282 25 H -0.277 1.277 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.412 0.588 38 H 0.406 0.594 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.062 0.938 46 H 0.038 0.962 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.028 18.448 14.511 25.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.140 4.140 7 C -0.097 4.097 8 C -0.117 4.117 9 C 0.025 3.975 10 N -0.390 5.390 11 C 0.395 3.605 12 O -0.527 6.527 13 N -0.380 5.380 14 C 0.043 3.957 15 C 0.050 3.950 16 C -0.177 4.177 17 C -0.177 4.177 18 C -0.566 4.566 19 H 0.062 0.938 20 C -0.172 4.172 21 N -0.537 5.537 22 Si 0.772 3.228 23 H -0.205 1.205 24 H -0.208 1.208 25 H -0.202 1.202 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.249 0.751 38 H 0.243 0.757 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.081 0.919 46 H 0.057 0.943 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.126 18.789 13.629 25.740 hybrid contribution -0.483 -0.926 -0.537 1.174 sum 10.642 17.863 13.092 24.571 Atomic orbital electron populations 1.20917 0.90496 1.03229 1.03094 1.20066 0.96838 0.92929 0.99361 1.21308 0.94787 0.97955 1.01022 1.21446 0.94451 0.98946 0.99574 1.21418 1.00928 0.92467 1.00565 1.21328 0.93660 0.99141 0.99840 1.19674 0.93954 0.94295 1.01736 1.20697 1.01445 0.94805 0.94764 1.21094 0.95131 0.83776 0.97488 1.44923 1.61206 1.25552 1.07269 1.16218 0.78788 0.81182 0.84341 1.90861 1.64739 1.64412 1.32693 1.45184 1.59338 1.22435 1.11082 1.21108 0.96216 0.94633 0.83717 1.18369 0.92347 0.89487 0.94768 1.21660 0.97378 1.01630 0.97056 1.21658 0.98643 1.00627 0.96790 1.21264 1.35981 1.06452 0.92884 0.93822 1.25450 0.95897 0.97126 0.98759 1.69906 1.41148 1.16891 1.25794 0.85764 0.77774 0.78345 0.80943 1.20521 1.20796 1.20160 0.89910 0.91007 0.91622 0.84717 0.84307 0.84448 0.84945 0.88760 0.88743 0.92936 0.93299 0.75119 0.75698 0.94774 0.94806 0.94337 0.91892 0.96427 0.96393 0.91891 0.94314 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.22 71.23 0.66 -1.08 16 2 C -0.09 -1.56 5.88 -19.87 -0.12 -1.68 16 3 C -0.13 -2.08 9.70 22.27 0.22 -1.86 16 4 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 5 C -0.14 -2.04 10.05 22.27 0.22 -1.82 16 6 C -0.12 -2.00 9.68 22.27 0.22 -1.78 16 7 C -0.10 -1.65 5.13 -19.87 -0.10 -1.75 16 8 C -0.08 -1.19 4.76 29.85 0.14 -1.05 16 9 C 0.15 3.33 5.46 86.38 0.47 3.81 16 10 N -0.73 -17.69 5.56 -478.55 -2.66 -20.35 16 11 C 0.70 24.47 8.57 179.06 1.53 26.01 16 12 O -0.64 -28.96 16.34 -3.99 -0.07 -29.02 16 13 N -0.72 -25.31 4.96 -478.54 -2.37 -27.69 16 14 C 0.17 7.31 4.50 86.38 0.39 7.69 16 15 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 16 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 17 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 18 C -0.53 -28.07 8.01 25.60 0.21 -27.87 16 19 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 20 C 0.03 1.45 5.15 84.65 0.44 1.88 16 21 N -0.90 -47.84 9.35 21.45 0.20 -47.64 16 22 Si 0.94 42.82 29.54 68.60 2.03 44.85 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 28 H 0.06 1.05 5.43 -2.39 -0.01 1.03 16 29 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.09 1.14 8.05 -2.39 -0.02 1.12 16 34 H 0.09 1.18 6.99 -2.39 -0.02 1.16 16 35 H 0.05 1.34 6.91 -2.39 -0.02 1.32 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.41 7.00 8.49 -92.70 -0.79 6.21 16 38 H 0.41 11.96 6.18 -92.70 -0.57 11.39 16 39 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.04 1.41 6.86 -2.38 -0.02 1.39 16 42 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 46 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 47 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 Total: -1.00 -65.81 373.03 2.37 -63.44 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.39 Total: 24.58 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 5.63 Total: -8.18 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -4.84 Total: -95.67 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.07 Total: -29.02 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -65.81 2.37 -63.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457486708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.592 kcal (2) G-P(sol) polarization free energy of solvation -65.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds