Wall clock time and date at job start Tue Mar 31 2020 09:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38382 * 120.40577 * 2 1 4 4 C 1.39336 * 118.42448 * 180.28274 * 3 2 1 5 5 N 1.39985 * 120.43122 * 179.73660 * 4 3 2 6 6 C 1.46503 * 119.99838 * 179.44708 * 5 4 3 7 7 H 1.08992 * 109.41370 * 35.27354 * 6 5 4 8 8 C 1.52964 * 109.40979 * 155.13533 * 6 5 4 9 9 C 1.53225 * 109.40105 * 183.70458 * 8 6 5 10 10 C 1.51272 * 108.53673 * 305.36848 * 9 8 6 11 11 C 1.37880 * 120.84796 * 231.32784 * 10 9 8 12 12 N 1.31513 * 120.00213 * 349.18988 * 11 10 9 13 13 Si 1.86803 * 119.99676 * 169.18999 * 11 10 9 14 14 H 1.48499 * 109.47261 * 354.66097 * 13 11 10 15 15 H 1.48500 * 109.46984 * 114.65921 * 13 11 10 16 16 H 1.48496 * 109.46877 * 234.65995 * 13 11 10 17 17 C 1.51262 * 118.30083 * 51.35078 * 10 9 8 18 18 C 1.52961 * 109.41393 * 275.41243 * 6 5 4 19 19 C 1.38723 * 119.14181 * 359.45876 * 4 3 2 20 20 N 1.31933 * 120.72583 * 0.27936 * 19 4 3 21 21 C 1.32212 * 121.72616 * 359.97438 * 20 19 4 22 22 O 1.35780 * 119.60606 * 179.97438 * 21 20 19 23 23 C 1.42902 * 117.00080 * 359.97438 * 22 21 20 24 24 C 1.53005 * 109.46968 * 149.99659 * 23 22 21 25 25 C 1.52993 * 109.47603 * 269.99929 * 23 22 21 26 26 H 1.09002 * 109.47526 * 270.25774 * 1 2 3 27 27 H 1.08998 * 109.47338 * 30.26046 * 1 2 3 28 28 H 1.09005 * 109.46669 * 150.25849 * 1 2 3 29 29 H 1.08003 * 120.78836 * 0.02562 * 3 2 1 30 30 H 0.96995 * 119.99833 * 359.72597 * 5 4 3 31 31 H 1.08998 * 109.47900 * 303.68008 * 8 6 5 32 32 H 1.08999 * 109.48606 * 63.70804 * 8 6 5 33 33 H 1.08994 * 109.62824 * 65.08540 * 9 8 6 34 34 H 1.09001 * 109.62507 * 185.46474 * 9 8 6 35 35 H 0.97003 * 120.00111 * 180.02562 * 12 11 10 36 36 H 1.09001 * 109.62637 * 68.36527 * 17 10 9 37 37 H 1.08993 * 109.63215 * 188.74451 * 17 10 9 38 38 H 1.09004 * 109.48345 * 296.28365 * 18 6 5 39 39 H 1.09004 * 109.48164 * 56.31990 * 18 6 5 40 40 H 1.08000 * 119.63794 * 180.25135 * 19 4 3 41 41 H 1.09003 * 109.46633 * 30.00595 * 23 22 21 42 42 H 1.09003 * 109.46679 * 60.00965 * 24 23 22 43 43 H 1.09006 * 109.46687 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.47074 * 300.00417 * 24 23 22 45 45 H 1.09006 * 109.46971 * 59.99996 * 25 23 22 46 46 H 1.08997 * 109.47491 * 179.97438 * 25 23 22 47 47 H 1.08999 * 109.47081 * 300.00474 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.1935 0.0000 4 6 3.5999 1.1453 -0.0060 5 7 4.3502 2.3271 -0.0118 6 6 5.8139 2.2655 -0.0059 7 1 6.1427 1.4074 -0.5921 8 6 6.3791 3.5474 -0.6198 9 6 7.9059 3.4439 -0.6984 10 6 8.4380 3.1263 0.6816 11 6 9.4474 3.8809 1.2410 12 7 10.1049 4.7493 0.5041 13 14 9.8809 3.6695 3.0457 14 1 8.9178 2.7339 3.6799 15 1 11.2555 3.1201 3.1635 16 1 9.8141 4.9866 3.7283 17 6 7.8349 1.9595 1.4318 18 6 6.3108 2.1186 1.4332 19 6 4.2331 -0.0889 -0.0004 20 7 3.5318 -1.2064 0.0051 21 6 2.2097 -1.1975 0.0058 22 8 1.5310 -2.3734 0.0110 23 6 2.3095 -3.5718 0.0148 24 6 1.5404 -4.6772 0.7411 25 6 2.5859 -4.0051 -1.4262 26 1 -0.3634 0.0046 1.0276 27 1 -0.3634 0.8876 -0.5179 28 1 -0.3633 -0.8924 -0.5098 29 1 1.6869 2.1399 0.0004 30 1 3.9009 3.1867 -0.0157 31 1 5.9718 3.6809 -1.6219 32 1 6.1038 4.4000 0.0011 33 1 8.1838 2.6486 -1.3899 34 1 8.3197 4.3911 -1.0444 35 1 10.8153 5.2799 0.8976 36 1 8.1062 1.0268 0.9374 37 1 8.2058 1.9520 2.4566 38 1 6.0372 3.0056 2.0046 39 1 5.8549 1.2386 1.8872 40 1 5.3121 -0.1356 -0.0009 41 1 3.2542 -3.3897 0.5271 42 1 0.5956 -4.8594 0.2288 43 1 2.1344 -5.5912 0.7444 44 1 1.3435 -4.3686 1.7678 45 1 3.1338 -3.2175 -1.9437 46 1 3.1800 -4.9189 -1.4233 47 1 1.6411 -4.1871 -1.9385 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:18 Heat of formation + Delta-G solvation = -24.406888 kcal Electronic energy + Delta-G solvation = -25109.523382 eV Core-core repulsion = 21677.490102 eV Total energy + Delta-G solvation = -3432.033280 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.57707 -38.56461 -37.22877 -34.49434 -33.63997 -32.82807 -31.81285 -29.86079 -29.02456 -27.40167 -26.92794 -26.54695 -23.77703 -22.45434 -21.59376 -21.10928 -20.78465 -19.46770 -18.27504 -17.04885 -16.32678 -15.88307 -15.62676 -15.07509 -14.55539 -14.49275 -14.15654 -13.96024 -13.41768 -13.38620 -13.03424 -12.89776 -12.72977 -12.67451 -12.48145 -12.40924 -12.30804 -12.25242 -12.05371 -11.90503 -11.55190 -11.19233 -11.02472 -10.88212 -10.77622 -10.65132 -10.22141 -10.07307 -9.93281 -9.42472 -9.36474 -9.09131 -8.91805 -8.61948 -8.44795 -6.93359 -6.16514 -4.05698 1.33202 1.70635 3.21193 3.23110 3.33378 3.33991 3.75909 4.02312 4.34527 4.58499 4.80885 4.92759 4.98272 5.08645 5.08989 5.12288 5.21710 5.38260 5.42886 5.55062 5.61383 5.61894 5.65915 5.73529 5.78736 5.82528 5.91582 6.00165 6.08253 6.11651 6.21959 6.28874 6.41144 6.54131 6.55239 6.67376 6.79572 6.82749 6.96679 7.12085 7.37343 7.46244 7.54884 7.67005 7.67960 7.77056 7.98440 8.21398 8.32476 8.90751 9.49681 10.92935 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.021339 B = 0.003148 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.816224 B = 8891.077997 C = 9430.347233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.155 3.845 5 N -0.735 5.735 6 C 0.159 3.841 7 H 0.069 0.931 8 C -0.114 4.114 9 C 0.015 3.985 10 C -0.490 4.490 11 C 0.077 3.923 12 N -0.886 5.886 13 Si 0.878 3.122 14 H -0.256 1.256 15 H -0.283 1.283 16 H -0.286 1.286 17 C -0.024 4.024 18 C -0.119 4.119 19 C 0.055 3.945 20 N -0.495 5.495 21 C 0.248 3.752 22 O -0.307 6.307 23 C 0.083 3.917 24 C -0.149 4.149 25 C -0.167 4.167 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.134 0.866 30 H 0.395 0.605 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.006 0.994 34 H 0.056 0.944 35 H 0.264 0.736 36 H 0.018 0.982 37 H 0.042 0.958 38 H 0.052 0.948 39 H 0.033 0.967 40 H 0.159 0.841 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.177 -11.140 -1.075 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C -0.167 4.167 4 C 0.048 3.952 5 N -0.362 5.362 6 C 0.056 3.944 7 H 0.087 0.913 8 C -0.152 4.152 9 C -0.023 4.023 10 C -0.509 4.509 11 C -0.126 4.126 12 N -0.523 5.523 13 Si 0.706 3.294 14 H -0.181 1.181 15 H -0.209 1.209 16 H -0.212 1.212 17 C -0.062 4.062 18 C -0.158 4.158 19 C -0.107 4.107 20 N -0.216 5.216 21 C 0.068 3.932 22 O -0.216 6.216 23 C 0.026 3.974 24 C -0.206 4.206 25 C -0.224 4.224 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.152 0.848 30 H 0.229 0.771 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.025 0.975 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.176 0.824 41 H 0.104 0.896 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.649 -11.895 -1.086 20.490 hybrid contribution -0.001 1.137 0.967 1.493 sum -16.650 -10.758 -0.119 19.824 Atomic orbital electron populations 1.20550 0.90225 1.02626 1.02177 1.19572 0.96904 0.90192 1.04336 1.20731 0.91835 0.97729 1.06401 1.18782 0.91056 0.88958 0.96450 1.45182 1.06178 1.04216 1.80662 1.21028 0.76547 0.99703 0.97165 0.91347 1.21912 1.00599 0.95265 0.97428 1.19311 0.88515 0.98667 0.95801 1.20017 1.17680 1.12484 1.00707 1.24847 0.95098 0.94928 0.97697 1.69896 1.21889 1.24941 1.35599 0.86764 0.78506 0.77926 0.86222 1.18055 1.20888 1.21244 1.19938 0.91159 0.97138 0.97963 1.22033 0.99157 0.99434 0.95189 1.22014 0.99748 0.85271 1.03642 1.67049 1.06761 1.31898 1.15854 1.19222 0.87419 0.85821 1.00759 1.86214 1.34579 1.11763 1.89052 1.22183 0.95780 0.82631 0.96775 1.21886 1.00918 0.97137 1.00655 1.22197 1.01862 1.01838 0.96538 0.91411 0.91803 0.91071 0.84833 0.77127 0.94557 0.92829 0.97545 0.92508 0.92624 0.96394 0.93998 0.92907 0.94779 0.82416 0.89555 0.91952 0.90865 0.92030 0.91975 0.91526 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.81 36.00 0.35 -0.66 16 2 C -0.11 -1.42 5.91 -104.35 -0.62 -2.04 16 3 C -0.14 -1.80 9.72 -39.12 -0.38 -2.18 16 4 C 0.15 2.32 6.66 -83.55 -0.56 1.76 16 5 N -0.73 -11.07 5.26 -52.06 -0.27 -11.34 16 6 C 0.16 2.83 2.06 -67.97 -0.14 2.69 16 7 H 0.07 1.26 6.51 -51.93 -0.34 0.92 16 8 C -0.11 -2.21 5.40 -26.63 -0.14 -2.36 16 9 C 0.01 0.35 5.92 -27.49 -0.16 0.19 16 10 C -0.49 -12.39 5.48 -98.92 -0.54 -12.93 16 11 C 0.08 2.06 5.44 -17.82 -0.10 1.96 16 12 N -0.89 -24.93 12.82 55.43 0.71 -24.22 16 13 Si 0.88 20.36 27.95 -169.99 -4.75 15.61 16 14 H -0.26 -5.68 5.57 56.52 0.32 -5.37 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 C -0.02 -0.54 5.66 -27.48 -0.16 -0.69 16 18 C -0.12 -2.32 5.45 -26.63 -0.15 -2.46 16 19 C 0.05 0.87 10.02 -17.33 -0.17 0.70 16 20 N -0.49 -7.88 8.63 -13.17 -0.11 -8.00 16 21 C 0.25 3.70 7.43 -17.16 -0.13 3.58 16 22 O -0.31 -4.19 8.82 -19.05 -0.17 -4.36 16 23 C 0.08 0.96 3.11 -26.73 -0.08 0.88 16 24 C -0.15 -1.31 9.56 37.16 0.36 -0.96 16 25 C -0.17 -1.75 9.53 37.15 0.35 -1.40 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.07 0.73 7.54 -51.93 -0.39 0.34 16 29 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 30 H 0.39 5.29 8.63 -40.82 -0.35 4.93 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.06 1.48 7.20 -51.93 -0.37 1.11 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.04 0.95 4.35 -51.93 -0.23 0.72 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.03 0.63 7.79 -51.93 -0.40 0.22 16 40 H 0.16 2.57 6.21 -52.49 -0.33 2.24 16 41 H 0.09 1.12 6.98 -51.93 -0.36 0.76 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -27.82 367.81 -9.23 -37.04 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.91 Total: 3.62 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -2.26 Total: -13.90 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.32 Total: -43.55 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.17 Total: -4.36 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.75 Total: 15.61 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.82 -9.23 -37.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.636 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds