Wall clock time and date at job start Tue Mar 31 2020 08:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47535 * 2 1 4 4 C 1.50697 * 109.47292 * 119.99877 * 2 1 3 5 5 C 1.38242 * 120.00073 * 119.99299 * 4 2 1 6 6 C 1.38231 * 120.00269 * 180.02562 * 5 4 2 7 7 C 1.38235 * 119.99879 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00307 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46902 * 90.00223 * 8 7 6 10 10 N 1.46495 * 109.47510 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00469 * 180.02562 * 10 9 8 12 12 O 1.21274 * 119.99880 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00286 * 179.97438 * 11 10 9 14 14 N 1.46498 * 109.47262 * 179.97438 * 13 11 10 15 15 C 1.46498 * 119.99755 * 269.99760 * 14 13 11 16 16 C 1.36936 * 120.00032 * 89.99936 * 14 13 11 17 17 H 1.07999 * 120.00044 * 22.35767 * 16 14 13 18 18 C 1.38807 * 120.00025 * 202.35190 * 16 14 13 19 19 N 1.31622 * 120.00184 * 11.43240 * 18 16 14 20 20 Si 1.86795 * 120.00194 * 191.42777 * 18 16 14 21 21 H 1.48504 * 109.46915 * 60.00334 * 20 18 16 22 22 H 1.48501 * 109.47589 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47443 * 300.00361 * 20 18 16 24 24 C 1.38244 * 119.99967 * 0.25586 * 7 6 5 25 25 C 1.38234 * 120.00101 * 300.02586 * 4 2 1 26 26 H 1.09008 * 109.47105 * 59.99421 * 1 2 3 27 27 H 1.08994 * 109.47240 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46654 * 300.00244 * 1 2 3 29 29 H 1.09000 * 109.47095 * 240.00053 * 2 1 3 30 30 H 1.08993 * 109.47131 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46703 * 300.00087 * 3 2 1 32 32 H 1.09000 * 109.46886 * 59.99925 * 3 2 1 33 33 H 1.08002 * 119.99959 * 0.02562 * 5 4 2 34 34 H 1.07996 * 120.00196 * 179.97438 * 6 5 4 35 35 H 1.08992 * 109.47579 * 210.00328 * 8 7 6 36 36 H 1.09001 * 109.47250 * 330.00645 * 8 7 6 37 37 H 1.09004 * 109.47439 * 300.00357 * 9 8 7 38 38 H 1.09000 * 109.47436 * 59.99725 * 9 8 7 39 39 H 0.97005 * 119.99706 * 359.97438 * 10 9 8 40 40 H 1.09007 * 109.47367 * 300.00055 * 13 11 10 41 41 H 1.09007 * 109.47218 * 59.99365 * 13 11 10 42 42 H 1.09005 * 109.47134 * 94.12446 * 15 14 13 43 43 H 1.09003 * 109.47215 * 214.12334 * 15 14 13 44 44 H 1.08997 * 109.47496 * 334.11992 * 15 14 13 45 45 H 0.96997 * 120.00238 * 179.97438 * 19 18 16 46 46 H 1.07995 * 119.99788 * 179.72149 * 24 7 6 47 47 H 1.07997 * 119.99947 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8270 -1.8344 1.1036 6 6 3.2874 -2.4864 2.2322 7 6 2.9527 -2.0146 3.4878 8 6 3.4541 -2.7256 4.7182 9 6 4.8017 -2.1335 5.1358 10 7 5.2895 -2.8250 6.3316 11 6 6.4666 -2.4689 6.8830 12 8 7.1223 -1.5763 6.3889 13 6 6.9681 -3.1798 8.1135 14 7 8.2585 -2.6130 8.5132 15 6 9.5020 -3.1752 7.9806 16 6 8.3023 -1.5576 9.3847 17 1 7.4705 -1.3698 10.0474 18 6 9.4157 -0.7294 9.4163 19 7 10.3254 -0.8131 8.4687 20 14 9.6232 0.5040 10.8037 21 1 9.6741 -0.2152 12.1019 22 1 10.8849 1.2622 10.6075 23 1 8.4752 1.4461 10.8044 24 6 2.1532 -0.8939 3.6146 25 6 1.6980 -0.2384 2.4860 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.0881 -2.2032 0.1227 34 1 3.9078 -3.3647 2.1332 35 1 2.7357 -2.6005 5.5283 36 1 3.5753 -3.7868 4.5007 37 1 5.5202 -2.2586 4.3257 38 1 4.6806 -1.0723 5.3533 39 1 4.7649 -3.5387 6.7270 40 1 6.2495 -3.0551 8.9235 41 1 7.0895 -4.2411 7.8958 42 1 9.8068 -2.6121 7.0984 43 1 10.2828 -3.1135 8.7387 44 1 9.3418 -4.2184 7.7083 45 1 11.1033 -0.2341 8.4906 46 1 1.8881 -0.5281 4.5955 47 1 1.0770 0.6397 2.5850 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:51 Heat of formation + Delta-G solvation = -4.983662 kcal Electronic energy + Delta-G solvation = -23924.867929 eV Core-core repulsion = 20493.676904 eV Total energy + Delta-G solvation = -3431.191025 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.91344 -38.69535 -36.36878 -35.13840 -34.25774 -31.81697 -31.13208 -31.02825 -28.39819 -27.45153 -26.68855 -25.69847 -23.81570 -22.94072 -21.79737 -21.28255 -20.13245 -19.53373 -16.71566 -16.66742 -16.17918 -15.89886 -15.53346 -15.05940 -14.84387 -14.55187 -14.17608 -13.88779 -13.85599 -13.68647 -13.37277 -13.25823 -13.04280 -12.70415 -12.58917 -12.42838 -12.07558 -11.74701 -11.65913 -11.60908 -11.34171 -11.26305 -11.00297 -10.89232 -10.82130 -10.77699 -10.59856 -10.28719 -9.97574 -9.82322 -9.04109 -8.96849 -8.63836 -8.44545 -8.40233 -6.68792 -5.62231 -3.08913 1.18041 1.28510 3.44462 3.49285 3.50606 3.55726 3.67975 3.86024 4.38701 4.49641 4.57595 4.77353 4.84103 4.87293 4.89146 5.10044 5.13268 5.15725 5.30391 5.31305 5.40880 5.51333 5.52661 5.53784 5.58275 5.65435 5.66705 5.87123 5.88880 5.89787 5.93146 5.94762 6.04504 6.20449 6.26346 6.30989 6.36162 6.47892 6.52683 6.79826 6.87414 7.05834 7.45216 7.82222 7.91799 8.19674 8.47606 9.21313 9.31483 9.92254 10.39806 11.42603 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.002347 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.489899 B =11927.984064 C =12485.025250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.083 4.083 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.080 4.080 8 C -0.090 4.090 9 C 0.126 3.874 10 N -0.752 5.752 11 C 0.468 3.532 12 O -0.508 6.508 13 C 0.133 3.867 14 N -0.574 5.574 15 C 0.164 3.836 16 C -0.259 4.259 17 H 0.069 0.931 18 C 0.007 3.993 19 N -0.897 5.897 20 Si 0.907 3.093 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C -0.111 4.111 25 C -0.113 4.113 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.390 0.610 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.033 0.967 43 H 0.048 0.952 44 H -0.004 1.004 45 H 0.252 0.748 46 H 0.122 0.878 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.718 -4.094 -15.174 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.203 4.203 4 C -0.083 4.083 5 C -0.135 4.135 6 C -0.129 4.129 7 C -0.081 4.081 8 C -0.128 4.128 9 C 0.002 3.998 10 N -0.410 5.410 11 C 0.251 3.749 12 O -0.380 6.380 13 C 0.000 4.000 14 N -0.293 5.293 15 C 0.020 3.980 16 C -0.388 4.388 17 H 0.086 0.914 18 C -0.192 4.192 19 N -0.541 5.541 20 Si 0.736 3.264 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.210 1.210 24 C -0.129 4.129 25 C -0.131 4.131 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.223 0.777 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.014 0.986 45 H 0.063 0.937 46 H 0.140 0.860 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.945 -3.308 -15.525 25.491 hybrid contribution -0.173 0.566 0.630 0.864 sum -20.119 -2.742 -14.895 25.182 Atomic orbital electron populations 1.21855 0.94414 1.01928 1.01880 1.20124 0.95868 0.96120 0.95413 1.21867 1.01469 0.95040 1.01875 1.19842 0.97994 0.95797 0.94623 1.21024 0.98281 0.95709 0.98490 1.21050 0.99751 1.00203 0.91928 1.19732 0.97676 0.96160 0.94510 1.20798 0.97007 0.99653 0.95313 1.21127 0.93301 0.96840 0.88555 1.46596 1.23885 1.40234 1.30246 1.23647 0.79457 0.84687 0.87069 1.90704 1.55789 1.29515 1.61981 1.21009 0.90629 0.96009 0.92365 1.43854 0.98836 1.36616 1.50032 1.20850 0.87436 0.90857 0.98885 1.19099 1.03610 1.05289 1.10824 0.91372 1.25092 0.98771 0.97660 0.97669 1.70089 1.12019 1.40265 1.31700 0.86320 0.77108 0.81191 0.81747 1.20993 1.21614 1.20987 1.21067 0.97862 0.95295 0.98703 1.20930 1.00464 0.99832 0.91911 0.92466 0.92590 0.92447 0.90594 0.92382 0.92462 0.92400 0.86267 0.86018 0.90482 0.90512 0.92263 0.92196 0.77682 0.90978 0.91590 0.94870 0.93292 0.98593 0.93748 0.86007 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.01 37.15 0.33 -0.60 16 2 C -0.06 -0.43 3.09 -91.77 -0.28 -0.71 16 3 C -0.15 -1.07 9.01 37.16 0.33 -0.73 16 4 C -0.08 -0.78 4.78 -104.62 -0.50 -1.28 16 5 C -0.12 -1.14 9.67 -39.58 -0.38 -1.53 16 6 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 7 C -0.08 -0.87 5.13 -104.62 -0.54 -1.41 16 8 C -0.09 -0.93 5.46 -27.88 -0.15 -1.08 16 9 C 0.13 1.83 5.66 -4.04 -0.02 1.81 16 10 N -0.75 -11.62 5.56 -60.30 -0.33 -11.96 16 11 C 0.47 9.97 7.90 -10.99 -0.09 9.89 16 12 O -0.51 -13.96 16.43 5.56 0.09 -13.87 16 13 C 0.13 2.74 6.19 -5.20 -0.03 2.71 16 14 N -0.57 -15.19 2.41 -182.50 -0.44 -15.63 16 15 C 0.16 4.29 9.01 59.85 0.54 4.83 16 16 C -0.26 -7.45 9.67 -15.06 -0.15 -7.60 16 17 H 0.07 1.89 7.84 -52.49 -0.41 1.48 16 18 C 0.01 0.22 5.13 -17.43 -0.09 0.13 16 19 N -0.90 -27.81 10.59 55.49 0.59 -27.22 16 20 Si 0.91 22.79 29.57 -169.99 -5.03 17.76 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 24 C -0.11 -1.17 9.70 -39.58 -0.38 -1.56 16 25 C -0.11 -1.11 8.71 -39.58 -0.34 -1.46 16 26 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.37 7.39 -51.93 -0.38 -0.01 16 29 H 0.08 0.53 7.88 -51.93 -0.41 0.12 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.43 7.39 -51.93 -0.38 0.04 16 33 H 0.12 0.95 7.95 -52.49 -0.42 0.53 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 36 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.39 4.50 8.47 -40.82 -0.35 4.16 16 40 H 0.07 1.35 8.03 -51.92 -0.42 0.93 16 41 H 0.07 1.15 7.86 -51.92 -0.41 0.74 16 42 H 0.03 0.97 7.42 -51.93 -0.39 0.59 16 43 H 0.05 1.34 7.18 -51.93 -0.37 0.97 16 44 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 45 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 47 H 0.12 0.99 7.10 -52.49 -0.37 0.61 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -36.05 385.52 -9.52 -45.57 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.07 Total: -0.34 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -2.14 Total: -0.13 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.19 Total: -54.80 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.03 Total: 17.76 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.05 -9.52 -45.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.591 kcal (2) G-P(sol) polarization free energy of solvation -36.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds