Wall clock time and date at job start Tue Mar 31 2020 09:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00145 * 2 1 4 4 C 1.50704 * 109.47223 * 66.04245 * 3 2 1 5 5 H 1.07991 * 120.00090 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99488 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00604 * 359.97438 * 6 4 3 8 8 Si 1.86809 * 119.99554 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46756 * 60.00036 * 8 6 4 10 10 H 1.48504 * 109.46808 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47378 * 300.00206 * 8 6 4 12 12 C 1.46893 * 111.00355 * 236.04217 * 2 1 3 13 13 C 1.50702 * 109.46950 * 288.15733 * 12 2 1 14 14 C 1.38140 * 120.03558 * 103.32184 * 13 12 2 15 15 C 1.38258 * 120.07146 * 179.72008 * 14 13 12 16 16 C 1.38308 * 120.13975 * 0.25795 * 15 14 13 17 17 C 1.38083 * 120.07177 * 0.02562 * 16 15 14 18 18 C 1.38850 * 120.04085 * 283.57450 * 13 12 2 19 19 N 1.39934 * 120.06561 * 0.02562 * 18 13 12 20 20 C 1.34779 * 119.99745 * 199.42535 * 19 18 13 21 21 O 1.21282 * 120.00050 * 5.42666 * 20 19 18 22 22 C 1.50703 * 119.99556 * 185.42122 * 20 19 18 23 23 C 1.53002 * 109.46738 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47141 * 299.99900 * 22 20 19 25 25 C 1.52996 * 109.47093 * 60.00267 * 22 20 19 26 26 H 1.08997 * 109.47487 * 180.58173 * 1 2 3 27 27 H 1.09000 * 109.47355 * 300.58774 * 1 2 3 28 28 H 1.09008 * 109.46961 * 60.58293 * 1 2 3 29 29 H 1.09008 * 109.47211 * 186.04299 * 3 2 1 30 30 H 1.09002 * 109.46961 * 306.04333 * 3 2 1 31 31 H 0.97000 * 119.99737 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47470 * 168.15757 * 12 2 1 33 33 H 1.08997 * 109.47148 * 48.15542 * 12 2 1 34 34 H 1.08003 * 119.96057 * 0.02562 * 14 13 12 35 35 H 1.07998 * 119.92948 * 180.23190 * 15 14 13 36 36 H 1.08006 * 119.95958 * 179.97438 * 16 15 14 37 37 H 1.08003 * 120.03876 * 180.02562 * 17 16 15 38 38 H 0.96994 * 119.99887 * 19.43146 * 19 18 13 39 39 H 1.09003 * 109.46608 * 60.00033 * 23 22 20 40 40 H 1.09000 * 109.46953 * 179.97438 * 23 22 20 41 41 H 1.08993 * 109.47413 * 300.00194 * 23 22 20 42 42 H 1.08998 * 109.47211 * 60.00152 * 24 22 20 43 43 H 1.09001 * 109.47285 * 179.97438 * 24 22 20 44 44 H 1.09002 * 109.47095 * 300.00414 * 24 22 20 45 45 H 1.08997 * 109.47510 * 59.99704 * 25 22 20 46 46 H 1.09001 * 109.47037 * 180.02562 * 25 22 20 47 47 H 1.08998 * 109.46917 * 299.99638 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5114 2.0487 6 6 2.0268 3.3495 1.5283 7 7 2.7120 4.0019 0.6148 8 14 1.5817 4.1874 3.1375 9 1 2.1734 3.4305 4.2699 10 1 2.1141 5.5738 3.1375 11 1 0.1045 4.2239 3.2846 12 6 1.9955 -0.7660 -1.1375 13 6 1.7622 -2.2364 -0.9039 14 6 0.7426 -2.8890 -1.5695 15 6 0.5316 -4.2393 -1.3601 16 6 1.3365 -4.9397 -0.4802 17 6 2.3536 -4.2920 0.1926 18 6 2.5683 -2.9356 -0.0156 19 7 3.5982 -2.2763 0.6646 20 6 4.6087 -2.9842 1.2072 21 8 4.6783 -4.1808 1.0226 22 6 5.6520 -2.2886 2.0432 23 6 6.6776 -3.3123 2.5341 24 6 6.3572 -1.2259 1.1981 25 6 4.9807 -1.6216 3.2454 26 1 -0.3634 -1.0276 0.0104 27 1 -0.3634 0.5229 0.8847 28 1 -0.3633 0.5048 -0.8952 29 1 3.0798 1.3443 -0.1082 30 1 1.5611 1.9273 -0.8310 31 1 2.9860 4.9183 0.7765 32 1 3.0647 -0.5792 -1.2376 33 1 1.4857 -0.4577 -2.0502 34 1 0.1129 -2.3449 -2.2578 35 1 -0.2638 -4.7480 -1.8845 36 1 1.1688 -5.9944 -0.3185 37 1 2.9821 -4.8396 0.8793 38 1 3.5848 -1.3098 0.7457 39 1 7.1557 -3.7872 1.6773 40 1 7.4325 -2.8092 3.1384 41 1 6.1756 -4.0698 3.1359 42 1 5.6268 -0.4965 0.8480 43 1 7.1116 -0.7225 1.8029 44 1 6.8354 -1.7012 0.3416 45 1 4.4783 -2.3787 3.8474 46 1 5.7353 -1.1181 3.8497 47 1 4.2503 -0.8922 2.8952 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237397903.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:25 Heat of formation + Delta-G solvation = -16.351101 kcal Electronic energy + Delta-G solvation = -26009.892027 eV Core-core repulsion = 22578.208073 eV Total energy + Delta-G solvation = -3431.683954 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.77052 -38.80656 -36.42449 -35.60846 -34.56008 -32.76399 -31.10064 -29.47101 -27.30833 -27.28896 -27.10209 -26.55287 -24.05273 -23.63852 -21.94729 -21.17681 -20.08334 -19.09148 -17.42690 -16.66494 -16.46824 -15.67491 -15.26766 -14.98773 -14.94350 -14.33481 -14.20152 -13.94193 -13.75643 -13.66573 -13.53840 -13.23338 -12.50356 -12.40932 -12.34091 -12.14145 -11.98290 -11.93000 -11.73561 -11.67105 -11.31728 -11.08570 -11.03673 -10.96562 -10.90977 -10.89375 -10.69809 -10.50013 -10.29297 -9.92355 -9.35548 -9.30049 -8.55224 -8.48164 -7.71659 -7.38752 -6.11012 -4.13052 1.51444 1.66633 2.76907 3.26001 3.27518 3.32458 3.34961 4.06971 4.36481 4.58031 4.77713 4.86752 4.94885 5.09669 5.16667 5.23779 5.28190 5.36432 5.51910 5.58301 5.63227 5.73014 5.76067 5.79708 5.83215 5.88006 5.93840 5.94904 6.04122 6.13420 6.18325 6.24089 6.30244 6.30691 6.31640 6.54838 6.65882 6.71617 6.78140 6.80246 7.14348 7.24917 7.32491 7.66391 7.71732 7.95003 8.08205 8.26688 8.42695 8.94722 9.51942 10.99413 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.010834 B = 0.005531 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.918051 B = 5061.169125 C = 6978.882479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.538 5.538 3 C 0.191 3.809 4 C -0.509 4.509 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.086 3.914 13 C -0.099 4.099 14 C -0.096 4.096 15 C -0.147 4.147 16 C -0.108 4.108 17 C -0.147 4.147 18 C 0.174 3.826 19 N -0.655 5.655 20 C 0.522 3.478 21 O -0.529 6.529 22 C -0.084 4.084 23 C -0.125 4.125 24 C -0.145 4.145 25 C -0.145 4.145 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.012 0.988 29 H 0.028 0.972 30 H -0.007 1.007 31 H 0.262 0.738 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.151 0.849 38 H 0.425 0.575 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.922 -13.150 -0.389 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.263 5.263 3 C 0.066 3.934 4 C -0.548 4.548 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.042 4.042 13 C -0.102 4.102 14 C -0.115 4.115 15 C -0.166 4.166 16 C -0.127 4.127 17 C -0.167 4.167 18 C 0.077 3.923 19 N -0.298 5.298 20 C 0.311 3.689 21 O -0.406 6.406 22 C -0.088 4.088 23 C -0.183 4.183 24 C -0.203 4.203 25 C -0.203 4.203 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.031 0.969 29 H 0.046 0.954 30 H 0.010 0.990 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.169 0.831 38 H 0.265 0.735 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.289 -13.970 -0.065 14.352 hybrid contribution -0.621 1.554 0.038 1.674 sum 2.668 -12.416 -0.026 12.699 Atomic orbital electron populations 1.22195 0.88393 0.99553 1.00745 1.62167 1.07666 1.17563 1.38888 1.19786 0.95132 0.81537 0.96901 1.21085 1.35125 0.96957 1.01586 0.91878 1.24966 0.95219 0.97290 0.96897 1.69942 1.38142 1.11523 1.34028 0.86592 0.78787 0.78419 0.83803 1.20138 1.21361 1.20297 1.20996 1.00290 0.89168 0.93743 1.19676 0.97364 0.96038 0.97140 1.20815 0.96799 0.94396 0.99496 1.20994 1.00598 0.94419 1.00590 1.20970 0.95235 0.99485 0.96983 1.21639 0.99344 0.93553 1.02133 1.17626 0.89456 0.91988 0.93185 1.43711 1.21209 1.12333 1.52588 1.20811 0.81736 0.87297 0.79079 1.90555 1.75280 1.15074 1.59690 1.20820 0.94740 0.97115 0.96083 1.21658 0.97475 0.97729 1.01439 1.21918 1.01138 0.97626 0.99582 1.21917 1.01285 1.00853 0.96229 0.93387 0.90830 0.96899 0.95406 0.98962 0.92814 0.90956 0.94370 0.86267 0.86615 0.86406 0.83137 0.73516 0.92060 0.91934 0.92025 0.91366 0.91025 0.92190 0.92216 0.91177 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.19 60.06 0.55 1.30 16 2 N -0.54 -10.71 4.32 -245.83 -1.06 -11.77 16 3 C 0.19 4.60 4.71 -4.98 -0.02 4.57 16 4 C -0.51 -13.35 8.51 -34.44 -0.29 -13.64 16 5 H 0.06 1.65 7.11 -52.49 -0.37 1.28 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -25.32 13.29 55.43 0.74 -24.58 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.09 1.49 4.31 -4.98 -0.02 1.47 16 13 C -0.10 -1.60 4.72 -104.43 -0.49 -2.09 16 14 C -0.10 -1.37 8.98 -39.61 -0.36 -1.73 16 15 C -0.15 -1.93 10.04 -39.55 -0.40 -2.33 16 16 C -0.11 -1.48 10.04 -39.61 -0.40 -1.88 16 17 C -0.15 -2.33 8.80 -39.40 -0.35 -2.68 16 18 C 0.17 2.87 6.49 -83.69 -0.54 2.33 16 19 N -0.66 -10.41 4.93 -9.86 -0.05 -10.46 16 20 C 0.52 7.96 6.33 -10.98 -0.07 7.89 16 21 O -0.53 -9.06 12.85 5.56 0.07 -8.99 16 22 C -0.08 -1.06 0.87 -155.66 -0.14 -1.19 16 23 C -0.13 -1.39 7.76 37.16 0.29 -1.11 16 24 C -0.15 -1.71 8.37 37.16 0.31 -1.40 16 25 C -0.15 -1.78 8.38 37.16 0.31 -1.47 16 26 H 0.05 0.82 6.85 -51.93 -0.36 0.46 16 27 H 0.07 1.48 6.84 -51.93 -0.36 1.13 16 28 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.03 0.70 7.86 -51.92 -0.41 0.29 16 30 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.07 1.25 7.31 -51.93 -0.38 0.87 16 33 H 0.04 0.64 7.88 -51.93 -0.41 0.23 16 34 H 0.12 1.52 8.01 -52.48 -0.42 1.10 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.15 2.51 5.38 -52.49 -0.28 2.23 16 38 H 0.43 6.96 6.04 -40.82 -0.25 6.71 16 39 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.07 0.88 7.45 -51.93 -0.39 0.49 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.07 1.03 7.69 -51.93 -0.40 0.63 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -28.89 375.23 -9.18 -38.07 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.80 Total: 6.86 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -1.71 Total: -10.49 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.37 Total: -46.81 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.07 Total: -8.99 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.89 -9.18 -38.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237397903.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.721 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds