Wall clock time and date at job start Tue Mar 31 2020 08:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50712 * 109.46846 * 2 1 4 4 C 1.38256 * 119.99686 * 270.02435 * 3 2 1 5 5 C 1.38219 * 119.99511 * 179.97438 * 4 3 2 6 6 C 1.38254 * 119.99698 * 359.80870 * 5 4 3 7 7 C 1.38213 * 120.00264 * 0.42367 * 6 5 4 8 8 C 1.50701 * 119.99878 * 179.80818 * 7 6 5 9 9 C 1.50703 * 109.47064 * 269.72422 * 8 7 6 10 10 O 1.21278 * 119.99985 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99944 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46840 * 180.02562 * 12 11 9 14 14 H 1.08990 * 109.47170 * 54.99738 * 13 12 11 15 15 C 1.53005 * 109.46867 * 294.99527 * 13 12 11 16 16 C 1.53002 * 109.46776 * 174.99842 * 13 12 11 17 17 N 1.46506 * 109.46916 * 184.99371 * 16 13 12 18 18 C 1.36935 * 119.99911 * 179.97438 * 17 16 13 19 19 H 1.07999 * 120.00226 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99846 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99926 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00048 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47479 * 90.00410 * 22 20 18 24 24 H 1.48503 * 109.46949 * 210.00306 * 22 20 18 25 25 H 1.48505 * 109.47144 * 329.99683 * 22 20 18 26 26 C 1.38205 * 119.99778 * 89.99881 * 3 2 1 27 27 H 1.08997 * 109.47829 * 60.00016 * 1 2 3 28 28 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47334 * 299.99478 * 1 2 3 30 30 H 1.09000 * 109.47244 * 240.00925 * 2 1 3 31 31 H 1.08990 * 109.47579 * 120.00269 * 2 1 3 32 32 H 1.07994 * 120.00449 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.99969 * 180.02562 * 5 4 3 34 34 H 1.08001 * 119.99899 * 180.22788 * 6 5 4 35 35 H 1.09002 * 109.47060 * 149.72458 * 8 7 6 36 36 H 1.09001 * 109.47380 * 29.72371 * 8 7 6 37 37 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 39 39 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 40 40 H 1.09001 * 109.47099 * 60.00379 * 15 13 12 41 41 H 1.09004 * 109.46908 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47443 * 300.00098 * 15 13 12 43 43 H 1.08993 * 109.47416 * 304.99509 * 16 13 12 44 44 H 1.09001 * 109.46966 * 65.00241 * 16 13 12 45 45 H 0.96999 * 119.99735 * 0.02562 * 17 16 13 46 46 H 0.96997 * 119.99658 * 180.02562 * 21 20 18 47 47 H 1.08005 * 119.99814 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4210 0.0000 4 6 2.2621 2.0728 -1.1974 5 6 2.7223 3.3762 -1.1973 6 6 2.9489 4.0291 0.0000 7 6 2.7236 3.3758 1.1970 8 6 2.9747 4.0862 2.5021 9 6 4.3979 3.8491 2.9374 10 8 5.1357 3.1705 2.2548 11 7 4.8507 4.3912 4.0852 12 6 6.2344 4.1612 4.5081 13 6 6.4889 4.8813 5.8338 14 1 5.7508 4.5608 6.5689 15 6 6.3760 6.3925 5.6231 16 6 7.8925 4.5401 6.3382 17 7 8.0926 5.1322 7.6632 18 6 9.2826 4.9586 8.3182 19 1 10.0737 4.3855 7.8578 20 6 9.4719 5.5191 9.5738 21 7 10.6159 5.3527 10.2031 22 14 8.1032 6.5098 10.3704 23 1 7.2434 5.6068 11.1770 24 1 8.6931 7.5493 11.2518 25 1 7.2852 7.1610 9.3159 26 6 2.2625 2.0724 1.1969 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8898 32 1 2.0822 1.5637 -2.1326 33 1 2.9015 3.8856 -2.1326 34 1 3.3049 5.0488 0.0001 35 1 2.2937 3.7023 3.2617 36 1 2.8080 5.1555 2.3717 37 1 4.2607 4.9343 4.6310 38 1 6.9152 4.5458 3.7486 39 1 6.4016 3.0919 4.6379 40 1 5.3760 6.6356 5.2637 41 1 6.5578 6.9056 6.5675 42 1 7.1142 6.7131 4.8879 43 1 8.0019 3.4576 6.4037 44 1 8.6342 4.9391 5.6462 45 1 7.3818 5.6466 8.0769 46 1 10.7481 5.7441 11.0807 47 1 2.0829 1.5631 2.1322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753622020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:05 Heat of formation + Delta-G solvation = -24.298453 kcal Electronic energy + Delta-G solvation = -23672.327232 eV Core-core repulsion = 20240.298654 eV Total energy + Delta-G solvation = -3432.028578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.28751 -39.18699 -36.99493 -34.74228 -34.45659 -32.83412 -32.34143 -30.56879 -29.79275 -28.18274 -26.51353 -25.28373 -24.22712 -22.50925 -21.96218 -21.01785 -20.45973 -19.84204 -17.72408 -16.98578 -16.76891 -16.16357 -16.10557 -15.42254 -15.14844 -14.62866 -14.49582 -14.12534 -13.98036 -13.88519 -13.72100 -13.34933 -13.22522 -13.11204 -12.80163 -12.49623 -12.32452 -12.26134 -12.08466 -12.01607 -11.57092 -11.46024 -11.13312 -11.05539 -11.03232 -10.77083 -10.63546 -10.60602 -10.16245 -9.94075 -9.59292 -9.09230 -8.98704 -8.91483 -8.81523 -7.24573 -5.77746 -3.13455 1.11624 1.20276 2.56562 3.08481 3.34199 3.36718 3.43006 3.61747 4.33697 4.42921 4.57173 4.59005 4.75007 4.81769 4.87459 4.91905 4.96303 5.03101 5.08432 5.16015 5.17399 5.22731 5.29002 5.37070 5.52858 5.56330 5.57493 5.64923 5.72581 5.78155 5.84134 5.87384 5.89514 5.91015 6.07782 6.22168 6.24940 6.34424 6.39760 6.40445 6.44422 6.64529 6.73786 6.79951 7.41787 7.98635 8.15519 8.41164 9.19960 9.91994 10.11761 11.40700 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.031230 B = 0.002072 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.365090 B =13507.080380 C =13675.213957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.061 4.061 8 C -0.104 4.104 9 C 0.511 3.489 10 O -0.532 6.532 11 N -0.728 5.728 12 C 0.127 3.873 13 C -0.114 4.114 14 H 0.076 0.924 15 C -0.143 4.143 16 C 0.164 3.836 17 N -0.754 5.754 18 C -0.244 4.244 19 H 0.090 0.910 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 C -0.102 4.102 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.399 0.601 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.030 0.970 44 H 0.030 0.970 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.873 -4.264 -22.028 32.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.061 4.061 8 C -0.144 4.144 9 C 0.296 3.704 10 O -0.408 6.408 11 N -0.380 5.380 12 C 0.003 3.997 13 C -0.133 4.133 14 H 0.094 0.906 15 C -0.201 4.201 16 C 0.037 3.963 17 N -0.400 5.400 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.193 4.193 21 N -0.582 5.582 22 Si 0.716 3.284 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.120 4.120 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.234 0.766 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -23.075 -4.837 -22.468 32.568 hybrid contribution -1.042 1.093 1.044 1.836 sum -24.117 -3.745 -21.423 32.475 Atomic orbital electron populations 1.21744 0.94742 1.01678 1.02148 1.20548 0.96101 0.92716 1.02970 1.19832 0.99135 0.96117 0.93086 1.20993 1.00378 0.95007 0.97402 1.21066 0.99543 0.94968 0.97851 1.20955 0.99848 1.00003 0.92016 1.19237 0.98916 0.94379 0.93592 1.20694 0.94808 1.02536 0.96342 1.20487 0.89372 0.79674 0.80833 1.90741 1.58158 1.38294 1.53574 1.46081 1.14282 1.53639 1.24041 1.21381 0.81687 1.00608 0.95978 1.21602 1.00080 0.96007 0.95652 0.90611 1.21819 1.00485 0.95214 1.02571 1.20558 0.91775 0.96568 0.87442 1.42684 1.16114 1.64078 1.17137 1.19069 0.91448 1.28111 0.98738 0.89171 1.24684 0.96760 1.00656 0.97175 1.69705 1.23563 1.49691 1.15223 0.86537 0.82261 0.80323 0.79292 1.21103 1.21717 1.20413 1.20829 0.99673 0.93917 0.97630 0.92624 0.92421 0.92553 0.91048 0.90974 0.86334 0.86124 0.86319 0.87987 0.87961 0.76625 0.91238 0.91237 0.93644 0.91796 0.92403 0.95222 0.95158 0.80646 0.93058 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.15 0.37 -0.50 16 2 C -0.09 -0.62 6.06 -27.88 -0.17 -0.79 16 3 C -0.08 -0.75 5.13 -104.62 -0.54 -1.29 16 4 C -0.12 -1.07 9.70 -39.58 -0.38 -1.45 16 5 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 6 C -0.11 -1.07 9.70 -39.58 -0.38 -1.46 16 7 C -0.06 -0.61 4.37 -104.63 -0.46 -1.06 16 8 C -0.10 -0.84 5.83 -29.03 -0.17 -1.01 16 9 C 0.51 5.98 7.82 -10.98 -0.09 5.90 16 10 O -0.53 -8.63 16.03 5.56 0.09 -8.54 16 11 N -0.73 -7.65 5.28 -60.29 -0.32 -7.96 16 12 C 0.13 1.64 5.06 -4.04 -0.02 1.62 16 13 C -0.11 -1.61 2.46 -90.62 -0.22 -1.83 16 14 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 15 C -0.14 -1.91 8.94 37.16 0.33 -1.57 16 16 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 17 N -0.75 -17.66 5.13 -59.91 -0.31 -17.96 16 18 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 19 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 20 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 21 N -0.93 -29.42 13.97 55.49 0.78 -28.64 16 22 Si 0.89 21.91 27.74 -169.99 -4.71 17.19 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 26 C -0.10 -1.01 9.36 -39.59 -0.37 -1.39 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.10 0.61 8.09 -51.93 -0.42 0.19 16 36 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.40 3.13 7.65 -40.82 -0.31 2.82 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.47 7.18 -51.93 -0.37 0.09 16 41 H 0.06 0.98 7.18 -51.93 -0.37 0.61 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.36 8.13 4.71 -40.82 -0.19 7.94 16 46 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 47 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 LS Contribution 385.85 15.07 5.81 5.81 Total: -1.00 -34.66 385.85 -9.45 -44.11 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -8.02 Total: 6.29 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -2.78 Total: -10.30 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.15 Total: -54.57 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.66 -9.45 -44.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753622020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.816 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds