Wall clock time and date at job start Tue Mar 31 2020 08:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50712 * 109.46846 * 2 1 4 4 C 1.38256 * 119.99686 * 270.02435 * 3 2 1 5 5 C 1.38219 * 119.99511 * 179.97438 * 4 3 2 6 6 C 1.38254 * 119.99698 * 359.80870 * 5 4 3 7 7 C 1.38213 * 120.00264 * 0.42367 * 6 5 4 8 8 C 1.50701 * 119.99878 * 179.80818 * 7 6 5 9 9 C 1.50703 * 109.47064 * 269.72422 * 8 7 6 10 10 O 1.21278 * 119.99985 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99944 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46840 * 180.02562 * 12 11 9 14 14 H 1.08990 * 109.47170 * 54.99738 * 13 12 11 15 15 C 1.53005 * 109.46867 * 294.99527 * 13 12 11 16 16 C 1.53002 * 109.46776 * 174.99842 * 13 12 11 17 17 N 1.46506 * 109.46916 * 184.99371 * 16 13 12 18 18 C 1.36935 * 119.99911 * 179.97438 * 17 16 13 19 19 H 1.07999 * 120.00226 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99846 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99926 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00048 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47479 * 90.00410 * 22 20 18 24 24 H 1.48503 * 109.46949 * 210.00306 * 22 20 18 25 25 H 1.48505 * 109.47144 * 329.99683 * 22 20 18 26 26 C 1.38205 * 119.99778 * 89.99881 * 3 2 1 27 27 H 1.08997 * 109.47829 * 60.00016 * 1 2 3 28 28 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47334 * 299.99478 * 1 2 3 30 30 H 1.09000 * 109.47244 * 240.00925 * 2 1 3 31 31 H 1.08990 * 109.47579 * 120.00269 * 2 1 3 32 32 H 1.07994 * 120.00449 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.99969 * 180.02562 * 5 4 3 34 34 H 1.08001 * 119.99899 * 180.22788 * 6 5 4 35 35 H 1.09002 * 109.47060 * 149.72458 * 8 7 6 36 36 H 1.09001 * 109.47380 * 29.72371 * 8 7 6 37 37 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 39 39 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 40 40 H 1.09001 * 109.47099 * 60.00379 * 15 13 12 41 41 H 1.09004 * 109.46908 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47443 * 300.00098 * 15 13 12 43 43 H 1.08993 * 109.47416 * 304.99509 * 16 13 12 44 44 H 1.09001 * 109.46966 * 65.00241 * 16 13 12 45 45 H 0.96999 * 119.99735 * 0.02562 * 17 16 13 46 46 H 0.96997 * 119.99658 * 180.02562 * 21 20 18 47 47 H 1.08005 * 119.99814 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4210 0.0000 4 6 2.2621 2.0728 -1.1974 5 6 2.7223 3.3762 -1.1973 6 6 2.9489 4.0291 0.0000 7 6 2.7236 3.3758 1.1970 8 6 2.9747 4.0862 2.5021 9 6 4.3979 3.8491 2.9374 10 8 5.1357 3.1705 2.2548 11 7 4.8507 4.3912 4.0852 12 6 6.2344 4.1612 4.5081 13 6 6.4889 4.8813 5.8338 14 1 5.7508 4.5608 6.5689 15 6 6.3760 6.3925 5.6231 16 6 7.8925 4.5401 6.3382 17 7 8.0926 5.1322 7.6632 18 6 9.2826 4.9586 8.3182 19 1 10.0737 4.3855 7.8578 20 6 9.4719 5.5191 9.5738 21 7 10.6159 5.3527 10.2031 22 14 8.1032 6.5098 10.3704 23 1 7.2434 5.6068 11.1770 24 1 8.6931 7.5493 11.2518 25 1 7.2852 7.1610 9.3159 26 6 2.2625 2.0724 1.1969 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8898 32 1 2.0822 1.5637 -2.1326 33 1 2.9015 3.8856 -2.1326 34 1 3.3049 5.0488 0.0001 35 1 2.2937 3.7023 3.2617 36 1 2.8080 5.1555 2.3717 37 1 4.2607 4.9343 4.6310 38 1 6.9152 4.5458 3.7486 39 1 6.4016 3.0919 4.6379 40 1 5.3760 6.6356 5.2637 41 1 6.5578 6.9056 6.5675 42 1 7.1142 6.7131 4.8879 43 1 8.0019 3.4576 6.4037 44 1 8.6342 4.9391 5.6462 45 1 7.3818 5.6466 8.0769 46 1 10.7481 5.7441 11.0807 47 1 2.0829 1.5631 2.1322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753622020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:04 Heat of formation + Delta-G solvation = -45.998212 kcal Electronic energy + Delta-G solvation = -23673.268204 eV Core-core repulsion = 20240.298654 eV Total energy + Delta-G solvation = -3432.969550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.10660 -39.97801 -38.31757 -36.03923 -35.30561 -34.18115 -33.32954 -32.33532 -30.40205 -28.96847 -27.81092 -26.68532 -24.79137 -24.02535 -22.97077 -21.85291 -21.58337 -20.82586 -19.62021 -17.98008 -17.52146 -17.13884 -16.88720 -16.45903 -16.31234 -15.92389 -15.63419 -15.45515 -15.09448 -14.74825 -14.60841 -14.49764 -14.17680 -14.00400 -13.87027 -13.77025 -13.63733 -13.21738 -12.95855 -12.88013 -12.78517 -12.59434 -12.18967 -12.16511 -12.08532 -12.00378 -11.75922 -11.69711 -11.67648 -11.62323 -10.99165 -10.95056 -10.07122 -9.66816 -9.48199 -9.30958 -8.03165 -5.37553 0.43783 0.52716 1.37072 1.42562 1.49839 1.68575 2.21919 2.48610 2.91784 3.27786 3.55843 3.68760 3.83591 3.93581 3.94472 4.01047 4.08802 4.17803 4.24842 4.30360 4.40144 4.51137 4.52507 4.58874 4.63385 4.68967 4.70627 4.78870 4.80091 4.92464 5.02098 5.03399 5.09239 5.09459 5.20814 5.23920 5.29286 5.38365 5.40041 5.49395 5.59172 5.67774 5.74586 5.74689 6.15927 6.20314 6.60425 7.07255 7.30742 7.81926 8.03275 9.18414 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.031230 B = 0.002072 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.365090 B =13507.080380 C =13675.213957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.126 4.126 6 C -0.127 4.127 7 C -0.076 4.076 8 C -0.095 4.095 9 C 0.510 3.490 10 O -0.583 6.583 11 N -0.714 5.714 12 C 0.137 3.863 13 C -0.097 4.097 14 H 0.089 0.911 15 C -0.141 4.141 16 C 0.158 3.842 17 N -0.753 5.753 18 C -0.239 4.239 19 H 0.052 0.948 20 C -0.068 4.068 21 N -0.985 5.985 22 Si 0.960 3.040 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.245 1.245 26 C -0.121 4.121 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.417 0.583 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.022 0.978 44 H 0.023 0.977 45 H 0.369 0.631 46 H 0.258 0.742 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.268 -3.119 -22.592 35.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.149 4.149 5 C -0.144 4.144 6 C -0.145 4.145 7 C -0.077 4.077 8 C -0.134 4.134 9 C 0.298 3.702 10 O -0.462 6.462 11 N -0.368 5.368 12 C 0.012 3.988 13 C -0.116 4.116 14 H 0.107 0.893 15 C -0.199 4.199 16 C 0.031 3.969 17 N -0.399 5.399 18 C -0.370 4.370 19 H 0.070 0.930 20 C -0.259 4.259 21 N -0.635 5.635 22 Si 0.787 3.213 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.169 1.169 26 C -0.139 4.139 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.254 0.746 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.041 0.959 45 H 0.203 0.797 46 H 0.067 0.933 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -26.531 -3.678 -23.058 35.343 hybrid contribution 0.098 0.645 1.121 1.297 sum -26.433 -3.034 -21.938 34.484 Atomic orbital electron populations 1.21711 0.93753 1.02377 1.02045 1.20583 0.96925 0.91673 1.03150 1.20134 0.98930 0.97034 0.93163 1.21276 1.00285 0.95246 0.98087 1.21378 0.99200 0.95247 0.98582 1.21230 1.00190 1.00765 0.92340 1.19516 0.98940 0.94649 0.94548 1.20737 0.92379 1.04262 0.96069 1.21124 0.90423 0.78441 0.80202 1.90727 1.59791 1.40604 1.55123 1.45898 1.13349 1.53500 1.24015 1.21074 0.83123 0.99536 0.95025 1.21387 0.96919 0.97062 0.96219 0.89255 1.21807 1.02631 0.93765 1.01648 1.20717 0.95016 0.95755 0.85410 1.42615 1.14573 1.64354 1.18404 1.19034 0.92279 1.26777 0.98911 0.93020 1.25607 0.99755 1.02570 0.97975 1.69907 1.26382 1.51519 1.15736 0.85339 0.78973 0.78415 0.78621 1.20232 1.22310 1.16949 1.21061 1.00308 0.94343 0.98185 0.92531 0.91311 0.92830 0.90446 0.91210 0.84741 0.84434 0.85265 0.85409 0.85119 0.74577 0.92277 0.92578 0.89893 0.93473 0.93015 0.95966 0.95943 0.79718 0.93306 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 71.98 0.71 -0.80 16 2 C -0.09 -1.16 6.06 29.85 0.18 -0.98 16 3 C -0.09 -1.64 5.13 -19.86 -0.10 -1.74 16 4 C -0.13 -2.21 9.70 22.27 0.22 -1.99 16 5 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 6 C -0.13 -2.31 9.70 22.27 0.22 -2.10 16 7 C -0.08 -1.40 4.37 -19.87 -0.09 -1.49 16 8 C -0.10 -1.27 5.83 29.10 0.17 -1.10 16 9 C 0.51 10.91 7.82 87.66 0.69 11.60 16 10 O -0.58 -18.62 16.03 -3.02 -0.05 -18.67 16 11 N -0.71 -12.96 5.28 -463.05 -2.45 -15.41 16 12 C 0.14 3.33 5.06 86.38 0.44 3.77 16 13 C -0.10 -2.51 2.46 -10.79 -0.03 -2.53 16 14 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 15 C -0.14 -3.30 8.94 71.98 0.64 -2.66 16 16 C 0.16 5.88 5.65 86.38 0.49 6.37 16 17 N -0.75 -34.62 5.13 -343.44 -1.76 -36.39 16 18 C -0.24 -13.80 10.47 84.03 0.88 -12.92 16 19 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 20 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 21 N -0.99 -63.65 13.97 21.65 0.30 -63.35 16 22 Si 0.96 44.64 27.74 68.60 1.90 46.54 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.25 -9.98 6.52 99.48 0.65 -9.33 16 26 C -0.12 -2.29 9.36 22.26 0.21 -2.08 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.59 8.14 -2.38 -0.02 0.58 16 30 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 31 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 32 H 0.13 1.70 8.06 -2.91 -0.02 1.67 16 33 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.13 1.05 8.09 -2.39 -0.02 1.03 16 36 H 0.13 1.00 8.08 -2.39 -0.02 0.99 16 37 H 0.42 4.72 7.65 -92.71 -0.71 4.01 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.32 7.18 -2.39 -0.02 1.30 16 41 H 0.05 1.28 7.18 -2.38 -0.02 1.26 16 42 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.37 15.70 4.71 -92.71 -0.44 15.26 16 46 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 47 H 0.12 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -77.57 385.85 3.00 -74.57 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -0.26 Total: 26.82 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 5.31 Total: -14.12 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -3.91 Total: -115.14 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.05 Total: -18.67 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Total: -77.57 3.00 -74.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753622020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.568 kcal (2) G-P(sol) polarization free energy of solvation -77.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds