Wall clock time and date at job start Tue Mar 31 2020 08:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47428 * 2 1 4 4 C 1.38253 * 120.00083 * 270.02346 * 3 2 1 5 5 C 1.38213 * 120.00252 * 179.97438 * 4 3 2 6 6 C 1.38254 * 119.99678 * 359.80964 * 5 4 3 7 7 C 1.38213 * 120.00042 * 0.41946 * 6 5 4 8 8 C 1.50708 * 120.00038 * 179.81075 * 7 6 5 9 9 C 1.50700 * 109.46791 * 269.72905 * 8 7 6 10 10 O 1.21277 * 120.00478 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99623 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00109 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47391 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.47112 * 305.00167 * 13 12 11 15 15 C 1.53001 * 109.47100 * 64.99897 * 13 12 11 16 16 C 1.53003 * 109.47014 * 184.99488 * 13 12 11 17 17 N 1.46499 * 109.46708 * 174.99880 * 16 13 12 18 18 C 1.36935 * 119.99926 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99877 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00369 * 179.73019 * 18 17 16 21 21 N 1.31617 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47045 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47426 * 119.99572 * 22 20 18 25 25 H 1.48501 * 109.46833 * 239.99815 * 22 20 18 26 26 C 1.38211 * 119.99798 * 89.99769 * 3 2 1 27 27 H 1.08997 * 109.47546 * 299.99957 * 1 2 3 28 28 H 1.09004 * 109.46831 * 60.00068 * 1 2 3 29 29 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46926 * 239.99502 * 2 1 3 31 31 H 1.09004 * 109.46831 * 119.99932 * 2 1 3 32 32 H 1.08005 * 120.00152 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.99931 * 180.02562 * 5 4 3 34 34 H 1.08004 * 119.99863 * 180.23669 * 6 5 4 35 35 H 1.08996 * 109.46984 * 149.72785 * 8 7 6 36 36 H 1.09005 * 109.46800 * 29.72523 * 8 7 6 37 37 H 0.97005 * 120.00431 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.47266 * 59.99449 * 12 11 9 39 39 H 1.08997 * 109.46950 * 299.99791 * 12 11 9 40 40 H 1.08999 * 109.47109 * 59.99648 * 15 13 12 41 41 H 1.08996 * 109.47478 * 180.02562 * 15 13 12 42 42 H 1.09005 * 109.47003 * 300.00163 * 15 13 12 43 43 H 1.08998 * 109.46692 * 55.00382 * 16 13 12 44 44 H 1.08994 * 109.47584 * 295.00246 * 16 13 12 45 45 H 0.97005 * 120.00261 * 0.02562 * 17 16 13 46 46 H 0.97004 * 120.00382 * 180.02562 * 21 20 18 47 47 H 1.07997 * 120.00569 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0727 -1.1973 5 6 2.7226 3.3759 -1.1973 6 6 2.9493 4.0289 0.0000 7 6 2.7239 3.3756 1.1969 8 6 2.9750 4.0861 2.5021 9 6 4.3982 3.8489 2.9374 10 8 5.1357 3.1695 2.2553 11 7 4.8510 4.3909 4.0852 12 6 6.2346 4.1608 4.5081 13 6 6.4896 4.8820 5.8332 14 1 6.2373 5.9371 5.7271 15 6 5.6224 4.2580 6.9285 16 6 7.9657 4.7460 6.2120 17 7 8.2353 5.5352 7.4165 18 6 9.4978 5.5668 7.9459 19 1 10.2947 5.0096 7.4757 20 6 9.7547 6.3190 9.0839 21 7 8.7848 7.0023 9.6538 22 14 11.4770 6.3628 9.8056 23 1 12.3796 5.5167 8.9842 24 1 11.9766 7.7611 9.8099 25 1 11.4439 5.8447 11.1970 26 6 2.2627 2.0723 1.1970 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0824 1.5636 -2.1327 33 1 2.9019 3.8852 -2.1327 34 1 3.3053 5.0486 0.0000 35 1 2.2940 3.7022 3.2616 36 1 2.8084 5.1554 2.3716 37 1 4.2610 4.9341 4.6310 38 1 6.9154 4.5454 3.7487 39 1 6.4018 3.0916 4.6379 40 1 5.8746 3.2029 7.0346 41 1 5.8037 4.7720 7.8724 42 1 4.5708 4.3548 6.6586 43 1 8.5859 5.1098 5.3929 44 1 8.1964 3.6984 6.4049 45 1 7.5196 6.0353 7.8390 46 1 8.9642 7.5283 10.4489 47 1 2.0823 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753622021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:09 Heat of formation + Delta-G solvation = -48.947951 kcal Electronic energy + Delta-G solvation = -23602.544282 eV Core-core repulsion = 20169.446822 eV Total energy + Delta-G solvation = -3433.097460 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.10231 -39.97000 -38.21555 -35.96064 -35.29981 -34.13261 -33.28838 -31.88536 -30.39169 -28.94735 -27.63592 -26.67316 -24.78773 -24.35267 -22.97750 -21.84300 -21.46879 -20.73186 -19.20797 -17.94531 -17.52571 -17.13819 -16.86093 -16.47363 -16.30410 -15.84826 -15.53837 -15.46391 -15.11242 -14.70521 -14.62105 -14.43634 -14.13517 -13.99092 -13.79852 -13.64735 -13.55997 -12.98162 -12.93676 -12.84931 -12.78153 -12.58919 -12.18814 -12.14623 -12.11501 -11.99107 -11.71930 -11.68391 -11.64735 -11.61835 -10.96745 -10.94079 -10.06715 -9.66389 -9.47874 -9.00119 -7.96451 -5.24623 0.44152 0.53084 1.47445 1.47647 1.58009 1.68485 2.22624 2.56148 2.92472 3.37326 3.68903 3.73790 3.84208 3.96326 4.00103 4.03046 4.12492 4.25069 4.30415 4.35894 4.40302 4.51823 4.55183 4.59360 4.63568 4.70740 4.71326 4.79387 4.80506 4.93781 5.03062 5.05847 5.09912 5.12593 5.21296 5.24538 5.34533 5.39202 5.43026 5.49394 5.50847 5.59508 5.68376 5.74968 6.16263 6.26556 6.60388 7.30084 7.33385 8.08354 8.33021 9.27108 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.036322 B = 0.001947 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.689120 B =14377.028875 C =14534.312367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.131 4.131 5 C -0.126 4.126 6 C -0.128 4.128 7 C -0.076 4.076 8 C -0.096 4.096 9 C 0.511 3.489 10 O -0.583 6.583 11 N -0.715 5.715 12 C 0.139 3.861 13 C -0.093 4.093 14 H 0.080 0.920 15 C -0.135 4.135 16 C 0.156 3.844 17 N -0.741 5.741 18 C -0.247 4.247 19 H 0.073 0.927 20 C -0.074 4.074 21 N -0.967 5.967 22 Si 0.973 3.027 23 H -0.269 1.269 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.120 4.120 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.416 0.584 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.042 0.958 42 H 0.078 0.922 43 H 0.018 0.982 44 H 0.020 0.980 45 H 0.377 0.623 46 H 0.252 0.748 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.082 -9.435 -20.505 30.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.149 4.149 5 C -0.144 4.144 6 C -0.146 4.146 7 C -0.076 4.076 8 C -0.135 4.135 9 C 0.299 3.701 10 O -0.462 6.462 11 N -0.368 5.368 12 C 0.014 3.986 13 C -0.112 4.112 14 H 0.098 0.902 15 C -0.192 4.192 16 C 0.028 3.972 17 N -0.384 5.384 18 C -0.379 4.379 19 H 0.091 0.909 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.802 3.198 23 H -0.193 1.193 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.138 4.138 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.253 0.747 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.036 0.964 44 H 0.038 0.962 45 H 0.210 0.790 46 H 0.061 0.939 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.370 -9.975 -20.982 30.899 hybrid contribution 0.847 0.662 1.069 1.516 sum -19.524 -9.314 -19.913 29.401 Atomic orbital electron populations 1.21712 0.93767 1.02384 1.02033 1.20582 0.96906 0.91613 1.03185 1.20135 0.98896 0.97064 0.93117 1.21277 1.00258 0.95197 0.98122 1.21372 0.99210 0.95281 0.98516 1.21228 1.00252 1.00735 0.92412 1.19509 0.98965 0.94695 0.94449 1.20740 0.92406 1.04190 0.96176 1.21114 0.90437 0.78461 0.80122 1.90717 1.59790 1.40642 1.55088 1.45930 1.13451 1.53450 1.23978 1.21076 0.82987 0.99797 0.94710 1.21325 0.95130 1.00501 0.94260 0.90206 1.21725 0.99532 1.00276 0.97711 1.20734 0.93996 0.94093 0.88332 1.42506 1.08631 1.57442 1.29834 1.19666 0.88482 1.23039 1.06685 0.90924 1.25541 1.01397 1.00415 0.99301 1.69805 1.32773 1.35947 1.23250 0.85081 0.79814 0.77069 0.77841 1.19313 1.21922 1.21912 1.21060 1.00264 0.94263 0.98236 0.92862 0.92545 0.91274 0.90399 0.91163 0.84666 0.84441 0.85422 0.85343 0.85335 0.74684 0.92571 0.92206 0.93140 0.93915 0.90273 0.96413 0.96228 0.79024 0.93938 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.89 71.98 0.71 -0.83 16 2 C -0.09 -1.17 6.06 29.85 0.18 -0.99 16 3 C -0.09 -1.67 5.13 -19.87 -0.10 -1.77 16 4 C -0.13 -2.26 9.70 22.27 0.22 -2.05 16 5 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 6 C -0.13 -2.47 9.70 22.27 0.22 -2.25 16 7 C -0.08 -1.48 4.37 -19.86 -0.09 -1.56 16 8 C -0.10 -1.42 5.83 29.10 0.17 -1.25 16 9 C 0.51 11.75 7.82 87.66 0.69 12.43 16 10 O -0.58 -19.28 16.03 -3.02 -0.05 -19.32 16 11 N -0.72 -14.63 5.28 -463.07 -2.45 -17.08 16 12 C 0.14 3.68 5.06 86.38 0.44 4.12 16 13 C -0.09 -2.75 2.46 -10.79 -0.03 -2.77 16 14 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 15 C -0.14 -3.74 8.94 71.98 0.64 -3.10 16 16 C 0.16 6.18 5.65 86.38 0.49 6.67 16 17 N -0.74 -37.36 5.33 -343.46 -1.83 -39.19 16 18 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 19 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 20 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 21 N -0.97 -58.70 13.06 21.65 0.28 -58.42 16 22 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 C -0.12 -2.35 9.36 22.27 0.21 -2.14 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.93 8.09 -2.38 -0.02 0.91 16 31 H 0.07 0.96 8.09 -2.38 -0.02 0.94 16 32 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 33 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.13 1.23 8.09 -2.39 -0.02 1.21 16 36 H 0.13 1.25 8.08 -2.38 -0.02 1.23 16 37 H 0.42 5.95 7.66 -92.70 -0.71 5.24 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.04 1.43 7.18 -2.39 -0.02 1.41 16 42 H 0.08 1.60 7.18 -2.38 -0.02 1.58 16 43 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.38 19.83 6.85 -92.70 -0.63 19.19 16 46 H 0.25 14.76 8.31 -92.71 -0.77 13.98 16 47 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -72.96 388.97 2.86 -70.10 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -0.40 Total: 29.93 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 5.27 Total: -14.36 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -3.99 Total: -114.69 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.05 Total: -19.32 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -72.96 2.86 -70.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753622021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.156 kcal (2) G-P(sol) polarization free energy of solvation -72.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds