Wall clock time and date at job start Tue Mar 31 2020 09:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47215 * 2 1 4 4 N 1.46495 * 109.47486 * 179.97438 * 3 2 1 5 5 C 1.46492 * 120.00715 * 270.00851 * 4 3 2 6 6 C 1.39054 * 119.99650 * 90.00275 * 4 3 2 7 7 C 1.39213 * 119.93042 * 180.02562 * 6 4 3 8 8 C 1.37615 * 120.06647 * 179.97438 * 7 6 4 9 9 C 1.39795 * 119.93395 * 359.97438 * 8 7 6 10 10 C 1.47514 * 120.07086 * 179.97438 * 9 8 7 11 11 O 1.21598 * 119.99976 * 335.97382 * 10 9 8 12 12 N 1.34776 * 120.00163 * 155.70415 * 10 9 8 13 13 C 1.46503 * 119.99673 * 354.83681 * 12 10 9 14 14 C 1.46500 * 120.00247 * 174.84667 * 12 10 9 15 15 H 1.08998 * 109.46848 * 359.97438 * 14 12 10 16 16 C 1.53002 * 109.46586 * 239.99480 * 14 12 10 17 17 C 1.50692 * 109.47366 * 119.99597 * 14 12 10 18 18 H 1.07996 * 120.00254 * 359.97438 * 17 14 12 19 19 C 1.37878 * 119.99916 * 179.97438 * 17 14 12 20 20 N 1.31515 * 120.00188 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 120.00039 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.47222 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47524 * 119.99946 * 21 19 17 24 24 H 1.48499 * 109.47158 * 239.99940 * 21 19 17 25 25 C 1.39799 * 119.85788 * 0.25123 * 9 8 7 26 26 C 1.37611 * 119.93218 * 359.51623 * 25 9 8 27 27 H 1.08996 * 109.47087 * 299.99679 * 1 2 3 28 28 H 1.09009 * 109.47167 * 59.99911 * 1 2 3 29 29 H 1.08993 * 109.46913 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47494 * 240.00410 * 2 1 3 31 31 H 1.09000 * 109.47139 * 120.00316 * 2 1 3 32 32 H 1.09007 * 109.46994 * 59.99711 * 3 2 1 33 33 H 1.09000 * 109.47325 * 300.00203 * 3 2 1 34 34 H 1.09002 * 109.46946 * 269.99948 * 5 4 3 35 35 H 1.09005 * 109.47410 * 29.98927 * 5 4 3 36 36 H 1.08996 * 109.48037 * 149.99869 * 5 4 3 37 37 H 1.07998 * 119.97239 * 359.97438 * 7 6 4 38 38 H 1.08006 * 120.03513 * 179.97438 * 8 7 6 39 39 H 1.09004 * 109.46755 * 95.77678 * 13 12 10 40 40 H 1.08999 * 109.47329 * 215.77100 * 13 12 10 41 41 H 1.08997 * 109.47366 * 335.77763 * 13 12 10 42 42 H 1.09007 * 109.46722 * 179.97438 * 16 14 12 43 43 H 1.08993 * 109.47522 * 299.99666 * 16 14 12 44 44 H 1.09004 * 109.47090 * 59.99901 * 16 14 12 45 45 H 0.96994 * 120.00155 * 180.02562 * 20 19 17 46 46 H 1.08000 * 120.03080 * 179.74444 * 25 9 8 47 47 H 1.07994 * 119.96701 * 180.21352 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2371 1.4426 1.2695 6 6 4.2007 1.4425 -1.2034 7 6 5.5928 1.4420 -1.2012 8 6 6.2841 1.4414 -2.3911 9 6 5.5871 1.4407 -3.6028 10 6 6.3251 1.4406 -4.8801 11 8 7.4619 1.8698 -4.9255 12 7 5.7414 0.9597 -5.9957 13 6 4.4188 0.3342 -5.9189 14 6 6.4294 1.0624 -7.2850 15 1 7.3924 1.5533 -7.1447 16 6 5.5758 1.8824 -8.2545 17 6 6.6460 -0.3176 -7.8501 18 1 6.3057 -1.1846 -7.3034 19 6 7.2788 -0.4735 -9.0652 20 7 7.6928 0.5823 -9.7312 21 14 7.5467 -2.1842 -9.7661 22 1 6.9923 -3.1951 -8.8301 23 1 6.8602 -2.2947 -11.0782 24 1 9.0012 -2.4228 -9.9468 25 6 4.1891 1.4459 -3.6016 26 6 3.5035 1.4417 -2.4084 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 4.4186 2.4703 1.5842 35 1 3.6477 0.9289 2.0291 36 1 5.1895 0.9288 1.1396 37 1 6.1309 1.4421 -0.2648 38 1 7.3642 1.4414 -2.3888 39 1 3.6537 1.0709 -6.1638 40 1 4.3665 -0.4930 -6.6268 41 1 4.2523 -0.0407 -4.9091 42 1 6.0880 1.9592 -9.2137 43 1 4.6126 1.3919 -8.3948 44 1 5.4191 2.8806 -7.8457 45 1 8.1376 0.4726 -10.5861 46 1 3.6478 1.4496 -4.5361 47 1 2.4235 1.4423 -2.4068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078420607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:02 Heat of formation + Delta-G solvation = 13.135380 kcal Electronic energy + Delta-G solvation = -25044.665143 eV Core-core repulsion = 21614.259819 eV Total energy + Delta-G solvation = -3430.405325 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.07334 -38.71258 -36.49292 -35.28166 -33.76270 -32.82084 -30.98009 -30.36947 -28.70160 -27.78777 -26.30845 -25.27582 -25.09029 -22.77874 -21.94610 -21.51901 -20.32213 -18.79890 -17.40787 -16.70202 -16.25270 -15.93634 -15.37874 -15.11386 -14.99898 -14.47867 -14.39013 -14.23339 -13.82416 -13.37993 -13.28961 -13.15140 -12.69541 -12.48699 -12.39068 -12.26299 -12.24409 -12.01264 -11.94404 -11.67318 -11.53589 -11.15432 -11.04711 -11.00767 -10.79446 -10.68703 -10.39067 -10.19678 -10.11166 -9.73174 -9.11413 -8.86605 -8.75815 -8.37485 -7.53819 -7.25799 -6.02012 -4.09372 1.40698 1.60265 2.91517 3.29402 3.37226 3.40506 3.51186 4.05614 4.33208 4.45277 4.51909 4.63245 4.74406 4.93609 4.97593 5.05359 5.11350 5.19123 5.27502 5.29036 5.30965 5.42462 5.45948 5.53496 5.62196 5.67893 5.69961 5.80660 5.86744 5.95654 6.02032 6.19350 6.28157 6.43695 6.46587 6.73062 6.82052 6.86237 6.91657 7.12210 7.13091 7.41305 7.52971 7.62530 7.78353 8.08825 8.26909 8.62812 8.90713 9.18374 9.57043 11.03400 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.021389 B = 0.003106 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.757737 B = 9013.290437 C = 9527.968090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C 0.122 3.878 4 N -0.631 5.631 5 C 0.092 3.908 6 C 0.228 3.772 7 C -0.211 4.211 8 C -0.016 4.016 9 C -0.179 4.179 10 C 0.549 3.451 11 O -0.556 6.556 12 N -0.588 5.588 13 C 0.074 3.926 14 C 0.258 3.742 15 H 0.063 0.937 16 C -0.146 4.146 17 C -0.523 4.523 18 H 0.060 0.940 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.898 3.102 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.054 4.054 26 C -0.210 4.210 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.046 0.954 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.029 0.971 44 H 0.011 0.989 45 H 0.262 0.738 46 H 0.146 0.854 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.362 0.763 20.621 25.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.001 4.001 4 N -0.341 5.341 5 C -0.051 4.051 6 C 0.126 3.874 7 C -0.233 4.233 8 C -0.036 4.036 9 C -0.185 4.185 10 C 0.337 3.663 11 O -0.436 6.436 12 N -0.319 5.319 13 C -0.070 4.070 14 C 0.158 3.842 15 H 0.081 0.919 16 C -0.205 4.205 17 C -0.561 4.561 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.073 4.073 26 C -0.233 4.233 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.048 0.952 44 H 0.030 0.970 45 H 0.072 0.928 46 H 0.163 0.837 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.760 1.038 20.556 24.758 hybrid contribution 0.041 -1.007 -0.392 1.082 sum -13.719 0.030 20.164 24.389 Atomic orbital electron populations 1.21707 0.95244 1.02020 1.01859 1.21994 0.95938 0.97655 1.02834 1.21503 0.79361 0.96532 1.02716 1.46331 1.04691 1.79865 1.03232 1.21632 0.97333 1.01123 0.85025 1.17960 0.91216 0.92560 0.85654 1.20563 0.91858 1.12482 0.98397 1.20984 1.00128 0.92081 0.90415 1.19949 0.93667 1.10670 0.94171 1.18197 0.85968 0.78616 0.83503 1.90712 1.18117 1.49033 1.85719 1.48089 1.18367 1.56226 1.09181 1.22122 0.84824 0.97989 1.02061 1.18931 0.92433 0.96244 0.76640 0.91883 1.22089 0.99333 0.95833 1.03221 1.21370 1.38364 0.92093 1.04317 0.92175 1.24895 0.95227 0.97007 0.96715 1.69890 1.39437 1.28478 1.14887 0.86449 0.77964 0.84249 0.78777 1.19814 1.20985 1.20941 1.21888 0.93523 0.93278 0.98628 1.20582 0.99413 1.12418 0.90838 0.92780 0.92435 0.92457 0.91284 0.92007 0.91037 0.90400 0.93393 0.91774 0.91136 0.85901 0.85210 0.93581 0.90611 0.91261 0.88821 0.95177 0.97016 0.92800 0.83722 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.15 -1.02 6.26 -26.73 -0.17 -1.18 16 3 C 0.12 0.90 5.14 -4.04 -0.02 0.88 16 4 N -0.63 -5.92 2.99 -179.63 -0.54 -6.46 16 5 C 0.09 0.66 10.17 59.84 0.61 1.27 16 6 C 0.23 2.78 6.55 -83.86 -0.55 2.23 16 7 C -0.21 -2.76 9.18 -39.45 -0.36 -3.12 16 8 C -0.02 -0.26 9.58 -39.23 -0.38 -0.64 16 9 C -0.18 -3.21 5.50 -104.95 -0.58 -3.79 16 10 C 0.55 12.42 7.48 -12.48 -0.09 12.33 16 11 O -0.56 -14.72 15.93 5.28 0.08 -14.64 16 12 N -0.59 -13.26 2.75 -176.50 -0.49 -13.75 16 13 C 0.07 1.30 7.73 59.85 0.46 1.76 16 14 C 0.26 6.81 2.63 -69.08 -0.18 6.63 16 15 H 0.06 1.93 6.91 -51.93 -0.36 1.57 16 16 C -0.15 -3.59 8.97 37.16 0.33 -3.25 16 17 C -0.52 -14.51 8.04 -34.44 -0.28 -14.79 16 18 H 0.06 1.65 7.24 -52.49 -0.38 1.27 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -25.60 11.32 55.43 0.63 -24.98 16 21 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.05 -0.80 7.51 -39.23 -0.29 -1.09 16 26 C -0.21 -2.61 9.18 -39.44 -0.36 -2.97 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 33 H 0.08 0.58 6.17 -51.93 -0.32 0.26 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 36 H 0.07 0.51 6.17 -51.93 -0.32 0.19 16 37 H 0.12 1.32 6.11 -52.49 -0.32 1.00 16 38 H 0.13 2.13 7.83 -52.48 -0.41 1.72 16 39 H 0.05 0.71 7.13 -51.93 -0.37 0.34 16 40 H 0.08 1.41 6.96 -51.93 -0.36 1.05 16 41 H 0.07 1.07 5.11 -51.93 -0.27 0.80 16 42 H 0.09 2.51 6.07 -51.92 -0.32 2.19 16 43 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 44 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.15 1.98 4.41 -52.49 -0.23 1.75 16 47 H 0.12 1.24 6.11 -52.49 -0.32 0.92 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -32.79 368.34 -8.67 -41.46 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.31 Total: 0.97 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -1.58 Total: -4.55 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.40 Total: -45.19 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.08 Total: -14.64 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.79 -8.67 -41.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078420607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.593 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds