Wall clock time and date at job start Tue Mar 31 2020 09:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47157 * 2 1 4 4 H 1.08999 * 109.47390 * 180.75093 * 3 2 1 5 5 C 1.50695 * 109.46976 * 300.75398 * 3 2 1 6 6 H 1.08002 * 120.00199 * 120.00257 * 5 3 2 7 7 C 1.37879 * 119.99998 * 299.99542 * 5 3 2 8 8 N 1.31516 * 119.99677 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99687 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47221 * 90.00066 * 9 7 5 11 11 H 1.48507 * 109.46891 * 209.99444 * 9 7 5 12 12 H 1.48496 * 109.47335 * 329.99177 * 9 7 5 13 13 N 1.46901 * 109.47286 * 60.75430 * 3 2 1 14 14 C 1.46897 * 111.00441 * 89.29304 * 13 3 2 15 15 H 1.09003 * 109.47028 * 320.81345 * 14 13 3 16 16 C 1.52998 * 109.47064 * 80.80894 * 14 13 3 17 17 C 1.50694 * 109.47714 * 200.81272 * 14 13 3 18 18 O 1.21289 * 119.99760 * 359.97438 * 17 14 13 19 19 N 1.34776 * 120.00471 * 180.02562 * 17 14 13 20 20 C 1.39927 * 120.00158 * 184.59233 * 19 17 14 21 21 C 1.38893 * 120.06694 * 333.77694 * 20 19 17 22 22 C 1.38096 * 119.92123 * 179.76653 * 21 20 19 23 23 C 1.50700 * 119.95991 * 180.25380 * 22 21 20 24 24 C 1.38301 * 120.07707 * 0.48581 * 22 21 20 25 25 C 1.38266 * 120.13647 * 359.76434 * 24 22 21 26 26 C 1.38133 * 120.07086 * 0.02562 * 25 24 22 27 27 C 1.50696 * 120.03323 * 179.97438 * 26 25 24 28 28 H 1.09003 * 109.47128 * 175.17895 * 1 2 3 29 29 H 1.09002 * 109.47750 * 295.17974 * 1 2 3 30 30 H 1.09001 * 109.47241 * 55.18335 * 1 2 3 31 31 H 1.09003 * 109.46881 * 119.99683 * 2 1 3 32 32 H 1.08994 * 109.47660 * 239.99242 * 2 1 3 33 33 H 0.97001 * 119.99662 * 180.02562 * 8 7 5 34 34 H 1.00893 * 111.00274 * 213.25132 * 13 3 2 35 35 H 1.08998 * 109.47214 * 300.00270 * 16 14 13 36 36 H 1.08995 * 109.47416 * 60.00114 * 16 14 13 37 37 H 1.09000 * 109.47228 * 180.02562 * 16 14 13 38 38 H 0.96999 * 119.99812 * 4.58953 * 19 17 14 39 39 H 1.07990 * 120.03996 * 359.97438 * 21 20 19 40 40 H 1.08999 * 109.47433 * 270.23093 * 23 22 21 41 41 H 1.09005 * 109.47514 * 30.23316 * 23 22 21 42 42 H 1.09004 * 109.47243 * 150.23292 * 23 22 21 43 43 H 1.07993 * 119.93447 * 179.74261 * 24 22 21 44 44 H 1.07995 * 119.96106 * 179.97438 * 25 24 22 45 45 H 1.09002 * 109.47333 * 270.01432 * 27 26 25 46 46 H 1.09002 * 109.47235 * 30.01878 * 27 26 25 47 47 H 1.09005 * 109.47234 * 150.01835 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0135 5 6 1.5224 2.1582 -1.2210 6 1 0.9028 3.0359 -1.1104 7 6 1.8400 1.6927 -2.4793 8 7 1.3879 2.3171 -3.5449 9 14 2.9112 0.1744 -2.6706 10 1 2.0518 -1.0360 -2.7109 11 1 3.6878 0.2722 -3.9326 12 1 3.8458 0.0798 -1.5205 13 7 1.5653 2.1297 1.2084 14 6 2.5152 1.9631 2.3164 15 1 2.9134 0.9485 2.3042 16 6 3.6626 2.9630 2.1592 17 6 1.8095 2.2100 3.6248 18 8 0.6311 2.4971 3.6334 19 7 2.4879 2.1129 4.7853 20 6 1.8129 2.2471 6.0037 21 6 0.6393 2.9869 6.0712 22 6 -0.0270 3.1133 7.2742 23 6 -1.3035 3.9110 7.3473 24 6 0.4784 2.5129 8.4129 25 6 1.6493 1.7801 8.3499 26 6 2.3182 1.6462 7.1488 27 6 3.5946 0.8479 7.0813 28 1 -0.3633 -1.0241 -0.0864 29 1 -0.3635 0.4372 0.9300 30 1 -0.3634 0.5867 -0.8437 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8898 33 1 1.6110 1.9894 -4.4302 34 1 1.3921 3.1065 1.0245 35 1 4.1731 2.7844 1.2129 36 1 3.2646 3.9776 2.1714 37 1 4.3677 2.8391 2.9811 38 1 3.4440 1.9499 4.7760 39 1 0.2465 3.4597 5.1834 40 1 -1.0693 4.9516 7.5717 41 1 -1.8231 3.8537 6.3907 42 1 -1.9414 3.5047 8.1322 43 1 -0.0423 2.6167 9.3533 44 1 2.0416 1.3128 9.2410 45 1 4.4440 1.5038 7.2723 46 1 3.5693 0.0581 7.8321 47 1 3.6937 0.4043 6.0906 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571773708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:00 Heat of formation + Delta-G solvation = -10.858951 kcal Electronic energy + Delta-G solvation = -25325.326904 eV Core-core repulsion = 21893.881107 eV Total energy + Delta-G solvation = -3431.445797 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.70086 -38.81360 -36.70732 -35.13023 -33.52294 -33.25717 -31.65529 -29.94769 -29.39363 -28.54854 -26.34708 -25.07272 -24.25180 -23.15211 -22.60662 -20.80806 -20.10284 -19.25248 -17.60165 -16.84501 -16.35853 -15.80090 -15.61854 -15.21239 -14.77301 -14.36251 -14.15246 -13.85708 -13.72989 -13.40827 -13.38000 -13.11574 -12.97048 -12.82567 -12.71910 -12.66087 -12.21017 -12.04138 -11.98563 -11.77785 -11.51800 -11.29087 -11.19735 -11.03183 -10.67161 -10.56918 -10.31564 -10.25231 -10.04010 -9.37785 -9.28039 -9.00479 -8.61294 -8.58152 -7.99688 -7.53654 -6.12825 -4.12030 1.23127 1.39156 2.79636 3.04826 3.24523 3.31803 3.34917 3.74165 4.34912 4.63412 4.73835 4.80151 4.91974 5.01370 5.06228 5.19342 5.21862 5.28018 5.35657 5.36424 5.40053 5.50905 5.56180 5.69573 5.73155 5.81316 5.91201 5.92223 6.08691 6.09754 6.20838 6.27446 6.27752 6.41016 6.47517 6.48075 6.65526 6.68215 6.90525 7.08776 7.12440 7.20365 7.41561 7.50329 7.58307 7.84077 8.24319 8.33296 8.55207 8.92243 9.48776 10.99916 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.003336 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.586832 B = 8391.456258 C = 8856.381494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 C 0.187 3.813 4 H 0.005 0.995 5 C -0.515 4.515 6 H 0.080 0.920 7 C 0.075 3.925 8 N -0.896 5.896 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.652 5.652 14 C 0.070 3.930 15 H 0.099 0.901 16 C -0.180 4.180 17 C 0.517 3.483 18 O -0.492 6.492 19 N -0.677 5.677 20 C 0.160 3.840 21 C -0.133 4.133 22 C -0.072 4.072 23 C -0.113 4.113 24 C -0.144 4.144 25 C -0.099 4.099 26 C -0.131 4.131 27 C -0.113 4.113 28 H 0.019 0.981 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.348 0.652 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.407 0.593 39 H 0.155 0.845 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 -0.694 22.714 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.151 4.151 3 C 0.079 3.921 4 H 0.023 0.977 5 C -0.553 4.553 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.195 1.195 13 N -0.283 5.283 14 C -0.045 4.045 15 H 0.117 0.883 16 C -0.239 4.239 17 C 0.305 3.695 18 O -0.364 6.364 19 N -0.323 5.323 20 C 0.065 3.935 21 C -0.153 4.153 22 C -0.073 4.073 23 C -0.170 4.170 24 C -0.163 4.163 25 C -0.117 4.117 26 C -0.134 4.134 27 C -0.169 4.169 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.168 0.832 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.243 0.757 39 H 0.172 0.828 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.364 -1.018 22.576 22.848 hybrid contribution 1.837 -0.521 -0.472 1.967 sum 5.201 -1.539 22.105 22.760 Atomic orbital electron populations 1.21488 0.95389 0.98363 1.03181 1.21762 0.97650 0.98038 0.97607 1.19621 0.93255 0.91384 0.87875 0.97711 1.21009 1.32587 1.13308 0.88401 0.90226 1.24883 0.95448 0.96660 0.95792 1.69886 1.45089 1.40336 0.98045 0.86872 0.80836 0.83888 0.76712 1.20353 1.22579 1.19455 1.60228 1.42861 1.19500 1.05730 1.21473 0.91950 1.00639 0.90441 0.88267 1.22510 0.98408 0.99985 1.03005 1.21224 0.87535 0.75853 0.84912 1.90605 1.15733 1.43543 1.86478 1.43745 1.12049 1.72185 1.04291 1.17683 0.94315 0.96603 0.84909 1.21598 0.95412 0.99254 0.99079 1.19848 0.96794 0.97823 0.92849 1.20781 0.94176 0.99096 1.02958 1.20936 0.97125 1.00286 0.97928 1.20734 0.95278 0.99273 0.96450 1.19585 0.99342 1.01499 0.92976 1.20699 0.94373 0.99120 1.02754 0.96180 0.92477 0.91239 0.95261 0.94093 0.92558 0.83163 0.90528 0.91836 0.92763 0.75667 0.82790 0.91296 0.91159 0.91716 0.86389 0.86077 0.91354 0.91262 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.53 37.16 0.35 -2.42 16 2 C -0.11 -2.47 5.31 -26.73 -0.14 -2.61 16 3 C 0.19 4.19 1.68 -68.87 -0.12 4.08 16 4 H 0.01 0.12 5.88 -51.93 -0.31 -0.18 16 5 C -0.51 -13.74 7.79 -34.44 -0.27 -14.00 16 6 H 0.08 2.33 7.80 -52.49 -0.41 1.92 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -26.65 13.96 55.43 0.77 -25.87 16 9 Si 0.89 21.45 24.36 -169.99 -4.14 17.31 16 10 H -0.28 -6.64 6.88 56.52 0.39 -6.25 16 11 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.17 6.53 56.52 0.37 -5.80 16 13 N -0.65 -12.89 4.90 -102.18 -0.50 -13.39 16 14 C 0.07 1.09 2.84 -68.87 -0.20 0.89 16 15 H 0.10 1.49 7.45 -51.93 -0.39 1.10 16 16 C -0.18 -2.36 9.04 37.16 0.34 -2.03 16 17 C 0.52 8.06 7.11 -10.99 -0.08 7.98 16 18 O -0.49 -9.37 13.37 5.55 0.07 -9.29 16 19 N -0.68 -8.35 4.87 -9.86 -0.05 -8.40 16 20 C 0.16 2.11 6.43 -83.69 -0.54 1.57 16 21 C -0.13 -1.90 8.45 -39.39 -0.33 -2.24 16 22 C -0.07 -0.88 5.88 -104.65 -0.62 -1.50 16 23 C -0.11 -1.12 10.01 36.01 0.36 -0.76 16 24 C -0.14 -1.53 9.70 -39.55 -0.38 -1.91 16 25 C -0.10 -1.01 9.70 -39.61 -0.38 -1.39 16 26 C -0.13 -1.44 5.90 -104.44 -0.62 -2.06 16 27 C -0.11 -0.90 9.45 36.00 0.34 -0.56 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 1.24 7.78 -51.93 -0.40 0.84 16 30 H 0.07 1.68 7.03 -51.93 -0.36 1.32 16 31 H 0.03 0.57 7.70 -51.93 -0.40 0.17 16 32 H 0.04 0.94 3.29 -51.93 -0.17 0.77 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.35 7.15 7.94 -39.30 -0.31 6.84 16 35 H 0.08 1.11 7.18 -51.93 -0.37 0.74 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.53 7.47 -51.93 -0.39 0.15 16 38 H 0.41 3.79 6.74 -40.82 -0.28 3.52 16 39 H 0.15 2.50 5.55 -52.49 -0.29 2.21 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 42 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 47 H 0.06 0.50 7.01 -51.93 -0.36 0.14 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -31.12 366.27 -8.12 -39.24 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -7.42 Total: 9.87 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -2.38 Total: -14.98 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.22 Total: -47.67 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.29 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.14 Total: 17.31 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.12 -8.12 -39.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571773708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.381 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds