Wall clock time and date at job start Tue Mar 31 2020 09:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47157 * 2 1 4 4 H 1.08999 * 109.47390 * 180.75093 * 3 2 1 5 5 C 1.50695 * 109.46976 * 300.75398 * 3 2 1 6 6 H 1.08002 * 120.00199 * 120.00257 * 5 3 2 7 7 C 1.37879 * 119.99998 * 299.99542 * 5 3 2 8 8 N 1.31516 * 119.99677 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99687 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47221 * 90.00066 * 9 7 5 11 11 H 1.48507 * 109.46891 * 209.99444 * 9 7 5 12 12 H 1.48496 * 109.47335 * 329.99177 * 9 7 5 13 13 N 1.46901 * 109.47286 * 60.75430 * 3 2 1 14 14 C 1.46897 * 111.00441 * 89.29304 * 13 3 2 15 15 H 1.09003 * 109.47028 * 320.81345 * 14 13 3 16 16 C 1.52998 * 109.47064 * 80.80894 * 14 13 3 17 17 C 1.50694 * 109.47714 * 200.81272 * 14 13 3 18 18 O 1.21289 * 119.99760 * 359.97438 * 17 14 13 19 19 N 1.34776 * 120.00471 * 180.02562 * 17 14 13 20 20 C 1.39927 * 120.00158 * 184.59233 * 19 17 14 21 21 C 1.38893 * 120.06694 * 333.77694 * 20 19 17 22 22 C 1.38096 * 119.92123 * 179.76653 * 21 20 19 23 23 C 1.50700 * 119.95991 * 180.25380 * 22 21 20 24 24 C 1.38301 * 120.07707 * 0.48581 * 22 21 20 25 25 C 1.38266 * 120.13647 * 359.76434 * 24 22 21 26 26 C 1.38133 * 120.07086 * 0.02562 * 25 24 22 27 27 C 1.50696 * 120.03323 * 179.97438 * 26 25 24 28 28 H 1.09003 * 109.47128 * 175.17895 * 1 2 3 29 29 H 1.09002 * 109.47750 * 295.17974 * 1 2 3 30 30 H 1.09001 * 109.47241 * 55.18335 * 1 2 3 31 31 H 1.09003 * 109.46881 * 119.99683 * 2 1 3 32 32 H 1.08994 * 109.47660 * 239.99242 * 2 1 3 33 33 H 0.97001 * 119.99662 * 180.02562 * 8 7 5 34 34 H 1.00893 * 111.00274 * 213.25132 * 13 3 2 35 35 H 1.08998 * 109.47214 * 300.00270 * 16 14 13 36 36 H 1.08995 * 109.47416 * 60.00114 * 16 14 13 37 37 H 1.09000 * 109.47228 * 180.02562 * 16 14 13 38 38 H 0.96999 * 119.99812 * 4.58953 * 19 17 14 39 39 H 1.07990 * 120.03996 * 359.97438 * 21 20 19 40 40 H 1.08999 * 109.47433 * 270.23093 * 23 22 21 41 41 H 1.09005 * 109.47514 * 30.23316 * 23 22 21 42 42 H 1.09004 * 109.47243 * 150.23292 * 23 22 21 43 43 H 1.07993 * 119.93447 * 179.74261 * 24 22 21 44 44 H 1.07995 * 119.96106 * 179.97438 * 25 24 22 45 45 H 1.09002 * 109.47333 * 270.01432 * 27 26 25 46 46 H 1.09002 * 109.47235 * 30.01878 * 27 26 25 47 47 H 1.09005 * 109.47234 * 150.01835 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0135 5 6 1.5224 2.1582 -1.2210 6 1 0.9028 3.0359 -1.1104 7 6 1.8400 1.6927 -2.4793 8 7 1.3879 2.3171 -3.5449 9 14 2.9112 0.1744 -2.6706 10 1 2.0518 -1.0360 -2.7109 11 1 3.6878 0.2722 -3.9326 12 1 3.8458 0.0798 -1.5205 13 7 1.5653 2.1297 1.2084 14 6 2.5152 1.9631 2.3164 15 1 2.9134 0.9485 2.3042 16 6 3.6626 2.9630 2.1592 17 6 1.8095 2.2100 3.6248 18 8 0.6311 2.4971 3.6334 19 7 2.4879 2.1129 4.7853 20 6 1.8129 2.2471 6.0037 21 6 0.6393 2.9869 6.0712 22 6 -0.0270 3.1133 7.2742 23 6 -1.3035 3.9110 7.3473 24 6 0.4784 2.5129 8.4129 25 6 1.6493 1.7801 8.3499 26 6 2.3182 1.6462 7.1488 27 6 3.5946 0.8479 7.0813 28 1 -0.3633 -1.0241 -0.0864 29 1 -0.3635 0.4372 0.9300 30 1 -0.3634 0.5867 -0.8437 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8898 33 1 1.6110 1.9894 -4.4302 34 1 1.3921 3.1065 1.0245 35 1 4.1731 2.7844 1.2129 36 1 3.2646 3.9776 2.1714 37 1 4.3677 2.8391 2.9811 38 1 3.4440 1.9499 4.7760 39 1 0.2465 3.4597 5.1834 40 1 -1.0693 4.9516 7.5717 41 1 -1.8231 3.8537 6.3907 42 1 -1.9414 3.5047 8.1322 43 1 -0.0423 2.6167 9.3533 44 1 2.0416 1.3128 9.2410 45 1 4.4440 1.5038 7.2723 46 1 3.5693 0.0581 7.8321 47 1 3.6937 0.4043 6.0906 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571773708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:00 Heat of formation + Delta-G solvation = -31.064623 kcal Electronic energy + Delta-G solvation = -25326.203088 eV Core-core repulsion = 21893.881107 eV Total energy + Delta-G solvation = -3432.321981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76375 -39.87516 -38.28005 -36.16551 -35.12139 -34.18436 -33.58823 -31.09074 -30.17192 -29.85272 -28.13341 -25.94583 -25.36339 -24.99493 -23.64601 -21.77853 -21.40685 -20.79927 -19.02466 -18.07926 -17.88474 -17.24394 -16.60221 -16.45824 -16.03042 -15.56816 -15.43482 -15.25346 -14.85483 -14.78945 -14.60520 -14.54537 -14.10989 -14.01087 -13.84094 -13.68547 -13.49521 -13.30456 -12.89887 -12.79687 -12.64073 -12.53052 -12.45618 -12.42822 -12.22648 -12.08982 -12.04169 -11.86270 -11.31068 -11.23116 -10.96780 -10.72164 -10.49902 -9.47500 -9.10096 -8.90706 -8.27513 -6.30543 0.34105 0.49122 1.33871 1.35361 1.46286 1.64344 1.98215 2.32997 2.86113 3.08152 3.45829 3.65078 3.95069 3.98474 4.08839 4.12419 4.19964 4.33838 4.36274 4.40885 4.44420 4.59942 4.62932 4.71454 4.78436 4.79096 4.80752 4.84754 4.89003 4.94045 4.99988 5.12152 5.15641 5.20456 5.31379 5.32721 5.40101 5.42420 5.52055 5.61107 5.61905 5.74226 5.76596 5.97740 6.18692 6.43474 6.47228 6.66569 6.81904 7.19677 7.34282 8.89064 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.003336 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.586832 B = 8391.456258 C = 8856.381494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.115 4.115 3 C 0.195 3.805 4 H 0.014 0.986 5 C -0.510 4.510 6 H 0.035 0.965 7 C 0.018 3.982 8 N -0.947 5.947 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.301 1.301 12 H -0.241 1.241 13 N -0.664 5.664 14 C 0.069 3.931 15 H 0.116 0.884 16 C -0.172 4.172 17 C 0.519 3.481 18 O -0.536 6.536 19 N -0.658 5.658 20 C 0.136 3.864 21 C -0.162 4.162 22 C -0.088 4.088 23 C -0.112 4.112 24 C -0.142 4.142 25 C -0.100 4.100 26 C -0.129 4.129 27 C -0.113 4.113 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.338 0.662 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.423 0.577 39 H 0.123 0.877 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.144 0.856 44 H 0.153 0.847 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.110 -2.963 26.113 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.153 4.153 3 C 0.086 3.914 4 H 0.032 0.968 5 C -0.549 4.549 6 H 0.053 0.947 7 C -0.180 4.180 8 N -0.588 5.588 9 Si 0.772 3.228 10 H -0.197 1.197 11 H -0.229 1.229 12 H -0.164 1.164 13 N -0.294 5.294 14 C -0.044 4.044 15 H 0.134 0.866 16 C -0.232 4.232 17 C 0.307 3.693 18 O -0.411 6.411 19 N -0.305 5.305 20 C 0.041 3.959 21 C -0.183 4.183 22 C -0.089 4.089 23 C -0.168 4.168 24 C -0.161 4.161 25 C -0.118 4.118 26 C -0.131 4.131 27 C -0.169 4.169 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.262 0.738 39 H 0.141 0.859 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.162 0.838 44 H 0.171 0.829 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.878 -3.296 26.036 26.894 hybrid contribution 0.994 0.278 -1.382 1.725 sum 6.872 -3.018 24.654 25.771 Atomic orbital electron populations 1.21367 0.95806 0.99095 1.01328 1.21768 0.97309 0.97461 0.98742 1.19429 0.93308 0.91620 0.87028 0.96849 1.21235 1.31096 1.12035 0.90501 0.94651 1.25713 0.97028 0.99888 0.95361 1.70045 1.47424 1.42621 0.98675 0.85905 0.79520 0.79930 0.77410 1.19706 1.22897 1.16419 1.60112 1.44800 1.18676 1.05835 1.21563 0.91754 1.02236 0.88894 0.86645 1.22425 0.98010 0.98637 1.04079 1.21167 0.86978 0.75450 0.85693 1.90617 1.17634 1.45757 1.87097 1.43445 1.12619 1.71066 1.03328 1.17871 0.94587 0.97766 0.85710 1.21515 0.96893 1.00850 0.99000 1.20106 0.97464 0.98503 0.92837 1.20798 0.93660 0.99667 1.02723 1.21287 0.97347 0.99237 0.98220 1.21184 0.94783 0.98541 0.97290 1.19955 1.00256 1.00710 0.92226 1.20789 0.93227 0.99447 1.03459 0.93790 0.92942 0.94746 0.92148 0.94622 0.92629 0.84311 0.91538 0.92727 0.88705 0.73773 0.85882 0.90318 0.92870 0.89766 0.83792 0.82899 0.89572 0.89690 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.53 71.98 0.69 -4.44 16 2 C -0.11 -4.81 5.31 30.59 0.16 -4.64 16 3 C 0.20 8.64 1.68 44.17 0.07 8.72 16 4 H 0.01 0.60 5.88 -2.39 -0.01 0.58 16 5 C -0.51 -28.14 7.79 25.60 0.20 -27.95 16 6 H 0.04 2.21 7.80 -2.91 -0.02 2.19 16 7 C 0.02 1.01 5.45 84.65 0.46 1.47 16 8 N -0.95 -58.57 13.96 21.45 0.30 -58.27 16 9 Si 0.95 43.70 24.36 68.60 1.67 45.37 16 10 H -0.27 -12.20 6.88 99.48 0.68 -11.52 16 11 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.24 -9.94 6.53 99.48 0.65 -9.29 16 13 N -0.66 -26.50 4.90 -477.18 -2.34 -28.84 16 14 C 0.07 2.07 2.84 44.17 0.13 2.20 16 15 H 0.12 3.09 7.45 -2.39 -0.02 3.07 16 16 C -0.17 -4.22 9.04 71.98 0.65 -3.57 16 17 C 0.52 15.98 7.11 87.66 0.62 16.61 16 18 O -0.54 -21.24 13.37 -3.06 -0.04 -21.28 16 19 N -0.66 -15.24 4.87 -303.51 -1.48 -16.72 16 20 C 0.14 3.42 6.43 38.15 0.25 3.66 16 21 C -0.16 -4.74 8.45 22.39 0.19 -4.55 16 22 C -0.09 -2.11 5.88 -19.88 -0.12 -2.23 16 23 C -0.11 -2.20 10.01 71.24 0.71 -1.49 16 24 C -0.14 -2.67 9.70 22.29 0.22 -2.45 16 25 C -0.10 -1.69 9.70 22.25 0.22 -1.47 16 26 C -0.13 -2.46 5.90 -19.74 -0.12 -2.58 16 27 C -0.11 -1.34 9.45 71.23 0.67 -0.67 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 2.28 7.78 -2.39 -0.02 2.26 16 30 H 0.03 1.69 7.03 -2.39 -0.02 1.67 16 31 H 0.06 2.16 7.70 -2.39 -0.02 2.15 16 32 H 0.04 1.54 3.29 -2.39 -0.01 1.53 16 33 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.34 14.58 7.94 -89.70 -0.71 13.87 16 35 H 0.07 1.79 7.18 -2.39 -0.02 1.78 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.53 7.47 -2.39 -0.02 1.52 16 38 H 0.42 6.63 6.74 -92.71 -0.62 6.01 16 39 H 0.12 4.34 5.55 -2.92 -0.02 4.33 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.05 1.20 8.09 -2.38 -0.02 1.18 16 42 H 0.08 1.28 8.09 -2.38 -0.02 1.26 16 43 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 44 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 45 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 47 H 0.06 0.77 7.01 -2.38 -0.02 0.75 16 Total: -1.00 -71.79 366.27 2.68 -69.11 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -0.43 Total: 34.03 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 5.00 Total: -23.39 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -3.52 Total: -103.84 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.04 Total: -21.28 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.67 Total: 45.37 kcal Total: -71.79 2.68 -69.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571773708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.047 kcal (2) G-P(sol) polarization free energy of solvation -71.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds