Wall clock time and date at job start Tue Mar 31 2020 08:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47320 * 2 1 4 4 C 1.50699 * 109.47265 * 120.00358 * 2 1 3 5 5 C 1.38378 * 119.92889 * 299.97540 * 4 2 1 6 6 C 1.38337 * 120.29616 * 179.97438 * 5 4 2 7 7 C 1.37982 * 120.14269 * 0.04201 * 6 5 4 8 8 C 1.39566 * 119.85128 * 359.97438 * 7 6 5 9 9 C 1.47841 * 120.14073 * 180.27245 * 8 7 6 10 10 O 1.21550 * 120.00206 * 179.72282 * 9 8 7 11 11 N 1.34780 * 120.00168 * 359.72449 * 9 8 7 12 12 C 1.46498 * 120.00112 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47317 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.47441 * 305.00486 * 13 12 11 15 15 C 1.53008 * 109.46923 * 65.00456 * 13 12 11 16 16 C 1.53001 * 109.47071 * 185.00286 * 13 12 11 17 17 N 1.46504 * 109.46955 * 175.00440 * 16 13 12 18 18 C 1.36930 * 119.99961 * 179.97438 * 17 16 13 19 19 H 1.08005 * 120.00282 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00155 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00043 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00305 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47192 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47480 * 120.00058 * 22 20 18 25 25 H 1.48506 * 109.47001 * 239.99934 * 22 20 18 26 26 C 1.37936 * 119.92516 * 119.99658 * 4 2 1 27 27 H 1.08999 * 109.46712 * 299.99899 * 1 2 3 28 28 H 1.09004 * 109.47242 * 59.99644 * 1 2 3 29 29 H 1.09001 * 109.47587 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46712 * 240.00101 * 2 1 3 31 31 H 1.08999 * 109.47146 * 60.00367 * 3 2 1 32 32 H 1.09001 * 109.47112 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47254 * 300.00349 * 3 2 1 34 34 H 1.08003 * 119.85208 * 0.02562 * 5 4 2 35 35 H 1.07998 * 119.93117 * 180.02562 * 6 5 4 36 36 H 1.07994 * 120.07191 * 180.02562 * 7 6 5 37 37 H 0.97000 * 120.00211 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.47545 * 300.00447 * 12 11 9 39 39 H 1.09002 * 109.46774 * 60.00081 * 12 11 9 40 40 H 1.08993 * 109.46892 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.46576 * 300.00163 * 15 13 12 42 42 H 1.08998 * 109.47038 * 59.99783 * 15 13 12 43 43 H 1.09005 * 109.47224 * 295.00191 * 16 13 12 44 44 H 1.09000 * 109.47239 * 55.00285 * 16 13 12 45 45 H 0.96995 * 119.99937 * 359.97438 * 17 16 13 46 46 H 0.97000 * 120.00145 * 180.02562 * 21 20 18 47 47 H 1.08002 * 120.08060 * 0.02601 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6976 -0.2362 2.4865 6 6 2.1541 -0.8828 3.6211 7 6 2.9479 -2.0056 3.5066 8 6 3.2895 -2.4890 2.2427 9 6 4.1346 -3.6950 2.1126 10 8 4.4264 -4.1167 1.0106 11 7 4.5816 -4.3270 3.2160 12 6 5.4186 -5.5224 3.0871 13 6 5.7870 -6.0396 4.4791 14 1 6.2568 -5.2397 5.0514 15 6 4.5215 -6.5075 5.2007 16 6 6.7613 -7.2118 4.3462 17 7 7.2065 -7.6300 5.6778 18 6 8.0878 -8.6697 5.8099 19 1 8.4549 -9.1812 4.9324 20 6 8.5101 -9.0656 7.0715 21 7 8.0631 -8.4419 8.1410 22 14 9.7128 -10.4835 7.2517 23 1 10.0597 -11.0122 5.9079 24 1 10.9446 -10.0048 7.9289 25 1 9.0897 -11.5612 8.0614 26 6 2.8252 -1.8318 1.1020 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.0764 0.6422 2.5816 35 1 1.8889 -0.5078 4.5985 36 1 3.3033 -2.5097 4.3931 37 1 4.3490 -3.9903 4.0955 38 1 4.8701 -6.2934 2.5460 39 1 6.3278 -5.2720 2.5405 40 1 4.7839 -6.8756 6.1925 41 1 3.8274 -5.6724 5.2952 42 1 4.0517 -7.3074 4.6284 43 1 6.2619 -8.0450 3.8517 44 1 7.6234 -6.9024 3.7553 45 1 6.8771 -7.1703 6.4659 46 1 8.3585 -8.7184 9.0226 47 1 3.0865 -2.2006 0.1211 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753638413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:57 Heat of formation + Delta-G solvation = -26.249824 kcal Electronic energy + Delta-G solvation = -23791.033030 eV Core-core repulsion = 20358.919835 eV Total energy + Delta-G solvation = -3432.113195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48201 -39.00393 -36.82268 -35.69797 -34.39222 -32.56754 -31.37218 -30.39356 -29.76634 -27.53684 -26.61534 -25.49988 -24.18621 -23.09009 -22.25281 -21.41747 -20.28536 -19.47752 -17.85674 -17.02825 -16.47038 -16.18578 -15.55211 -15.47103 -15.08522 -14.55547 -14.35973 -14.14617 -13.99032 -13.88262 -13.78552 -13.60177 -13.04625 -12.84030 -12.64995 -12.50177 -12.40025 -12.23231 -12.05281 -11.89276 -11.54311 -11.22739 -11.07024 -11.03650 -10.92482 -10.71692 -10.57829 -10.42431 -10.08338 -9.90923 -9.67467 -9.29150 -9.11246 -8.95990 -8.88302 -6.92405 -5.77425 -3.05700 0.60877 1.04906 2.73255 3.11159 3.43493 3.49488 3.51573 3.62707 4.22376 4.37635 4.52984 4.58992 4.69855 4.76969 4.79367 4.92329 5.03724 5.06601 5.15598 5.21241 5.22140 5.37757 5.41874 5.42408 5.54659 5.57684 5.58120 5.72249 5.79552 5.80806 5.83898 5.95460 5.98133 6.03375 6.07693 6.11747 6.23279 6.25415 6.38442 6.45959 6.58722 6.64698 6.76888 6.86402 7.45748 7.71001 8.15149 8.41739 9.53118 10.10362 10.45212 11.45652 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.040581 B = 0.002049 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.804614 B =13661.146549 C =14019.873995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.086 4.086 5 C -0.092 4.092 6 C -0.124 4.124 7 C -0.091 4.091 8 C -0.128 4.128 9 C 0.554 3.446 10 O -0.540 6.540 11 N -0.719 5.719 12 C 0.126 3.874 13 C -0.111 4.111 14 H 0.076 0.924 15 C -0.142 4.142 16 C 0.160 3.840 17 N -0.731 5.731 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.059 4.059 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.400 0.600 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.053 0.947 43 H 0.023 0.977 44 H 0.021 0.979 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.930 20.871 -12.766 29.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.202 4.202 4 C -0.086 4.086 5 C -0.111 4.111 6 C -0.142 4.142 7 C -0.109 4.109 8 C -0.131 4.131 9 C 0.341 3.659 10 O -0.418 6.418 11 N -0.371 5.371 12 C 0.003 3.997 13 C -0.130 4.130 14 H 0.095 0.905 15 C -0.199 4.199 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.078 4.078 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.235 0.765 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.041 0.959 44 H 0.039 0.961 45 H 0.218 0.782 46 H 0.064 0.936 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.585 20.391 -13.596 29.592 hybrid contribution 0.505 -0.520 1.033 1.262 sum -16.080 19.871 -12.563 28.483 Atomic orbital electron populations 1.21865 0.94149 1.02192 1.01967 1.20151 0.96074 0.96119 0.95315 1.21866 1.01426 0.94922 1.01967 1.19842 0.98039 0.95707 0.95025 1.21169 0.98684 0.99343 0.91869 1.21093 0.98348 0.95860 0.98899 1.21348 0.97009 0.96238 0.96348 1.19992 1.01542 0.97247 0.94336 1.18273 0.79862 0.83242 0.84502 1.90769 1.58327 1.66787 1.25946 1.45995 1.52651 1.29683 1.08754 1.21453 0.94402 0.85987 0.97888 1.21561 0.97519 0.99566 0.94348 0.90515 1.21797 0.96025 1.00170 1.01920 1.20578 0.93818 0.92781 0.89604 1.42343 1.53900 1.39533 1.01765 1.19292 1.17614 1.07562 0.92414 0.91075 1.24742 1.00963 0.99974 0.95445 1.69668 1.48057 1.43363 0.97245 0.86104 0.80642 0.81915 0.77463 1.20535 1.21887 1.21888 1.21181 0.94550 0.93470 0.98587 0.92448 0.92251 0.92390 0.90132 0.92445 0.92381 0.92250 0.85753 0.85335 0.85546 0.76466 0.91163 0.91175 0.91089 0.93992 0.92748 0.95941 0.96076 0.78216 0.93593 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.01 37.16 0.33 -0.48 16 2 C -0.06 -0.38 3.09 -91.78 -0.28 -0.67 16 3 C -0.14 -0.82 9.01 37.16 0.33 -0.48 16 4 C -0.09 -0.72 4.78 -104.68 -0.50 -1.22 16 5 C -0.09 -0.69 8.71 -39.49 -0.34 -1.03 16 6 C -0.12 -0.94 10.03 -39.64 -0.40 -1.34 16 7 C -0.09 -0.81 9.54 -39.18 -0.37 -1.18 16 8 C -0.13 -1.44 5.87 -104.97 -0.62 -2.06 16 9 C 0.55 7.63 7.77 -12.33 -0.10 7.53 16 10 O -0.54 -9.31 16.35 5.32 0.09 -9.22 16 11 N -0.72 -8.87 5.23 -61.25 -0.32 -9.19 16 12 C 0.13 1.78 5.06 -4.04 -0.02 1.76 16 13 C -0.11 -1.71 2.46 -90.62 -0.22 -1.94 16 14 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.14 -2.09 8.94 37.16 0.33 -1.76 16 16 C 0.16 3.19 5.65 -4.04 -0.02 3.17 16 17 N -0.73 -18.32 5.33 -59.90 -0.32 -18.64 16 18 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 22 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 C -0.06 -0.62 9.21 -39.19 -0.36 -0.98 16 27 H 0.06 0.29 7.38 -51.93 -0.38 -0.09 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.54 7.87 -51.93 -0.41 0.13 16 31 H 0.06 0.29 7.38 -51.93 -0.38 -0.09 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.12 0.67 7.08 -52.48 -0.37 0.30 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.91 6.40 -52.49 -0.34 0.57 16 37 H 0.40 4.00 5.69 -40.82 -0.23 3.77 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 41 H 0.04 0.50 7.18 -51.93 -0.37 0.12 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.38 9.98 6.85 -40.82 -0.28 9.70 16 46 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.13 1.47 7.53 -52.49 -0.40 1.07 16 LS Contribution 381.64 15.07 5.75 5.75 Total: -1.00 -32.82 381.64 -9.32 -42.13 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.73 Total: 7.15 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -2.48 Total: -8.04 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.08 Total: -55.26 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.82 -9.32 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.882 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds