Wall clock time and date at job start Tue Mar 31 2020 08:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47320 * 2 1 4 4 C 1.50699 * 109.47265 * 120.00358 * 2 1 3 5 5 C 1.38378 * 119.92889 * 299.97540 * 4 2 1 6 6 C 1.38337 * 120.29616 * 179.97438 * 5 4 2 7 7 C 1.37982 * 120.14269 * 0.04201 * 6 5 4 8 8 C 1.39566 * 119.85128 * 359.97438 * 7 6 5 9 9 C 1.47841 * 120.14073 * 180.27245 * 8 7 6 10 10 O 1.21550 * 120.00206 * 179.72282 * 9 8 7 11 11 N 1.34780 * 120.00168 * 359.72449 * 9 8 7 12 12 C 1.46498 * 120.00112 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47317 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.47441 * 305.00486 * 13 12 11 15 15 C 1.53008 * 109.46923 * 65.00456 * 13 12 11 16 16 C 1.53001 * 109.47071 * 185.00286 * 13 12 11 17 17 N 1.46504 * 109.46955 * 175.00440 * 16 13 12 18 18 C 1.36930 * 119.99961 * 179.97438 * 17 16 13 19 19 H 1.08005 * 120.00282 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00155 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00043 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00305 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47192 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47480 * 120.00058 * 22 20 18 25 25 H 1.48506 * 109.47001 * 239.99934 * 22 20 18 26 26 C 1.37936 * 119.92516 * 119.99658 * 4 2 1 27 27 H 1.08999 * 109.46712 * 299.99899 * 1 2 3 28 28 H 1.09004 * 109.47242 * 59.99644 * 1 2 3 29 29 H 1.09001 * 109.47587 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46712 * 240.00101 * 2 1 3 31 31 H 1.08999 * 109.47146 * 60.00367 * 3 2 1 32 32 H 1.09001 * 109.47112 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47254 * 300.00349 * 3 2 1 34 34 H 1.08003 * 119.85208 * 0.02562 * 5 4 2 35 35 H 1.07998 * 119.93117 * 180.02562 * 6 5 4 36 36 H 1.07994 * 120.07191 * 180.02562 * 7 6 5 37 37 H 0.97000 * 120.00211 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.47545 * 300.00447 * 12 11 9 39 39 H 1.09002 * 109.46774 * 60.00081 * 12 11 9 40 40 H 1.08993 * 109.46892 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.46576 * 300.00163 * 15 13 12 42 42 H 1.08998 * 109.47038 * 59.99783 * 15 13 12 43 43 H 1.09005 * 109.47224 * 295.00191 * 16 13 12 44 44 H 1.09000 * 109.47239 * 55.00285 * 16 13 12 45 45 H 0.96995 * 119.99937 * 359.97438 * 17 16 13 46 46 H 0.97000 * 120.00145 * 180.02562 * 21 20 18 47 47 H 1.08002 * 120.08060 * 0.02601 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6976 -0.2362 2.4865 6 6 2.1541 -0.8828 3.6211 7 6 2.9479 -2.0056 3.5066 8 6 3.2895 -2.4890 2.2427 9 6 4.1346 -3.6950 2.1126 10 8 4.4264 -4.1167 1.0106 11 7 4.5816 -4.3270 3.2160 12 6 5.4186 -5.5224 3.0871 13 6 5.7870 -6.0396 4.4791 14 1 6.2568 -5.2397 5.0514 15 6 4.5215 -6.5075 5.2007 16 6 6.7613 -7.2118 4.3462 17 7 7.2065 -7.6300 5.6778 18 6 8.0878 -8.6697 5.8099 19 1 8.4549 -9.1812 4.9324 20 6 8.5101 -9.0656 7.0715 21 7 8.0631 -8.4419 8.1410 22 14 9.7128 -10.4835 7.2517 23 1 10.0597 -11.0122 5.9079 24 1 10.9446 -10.0048 7.9289 25 1 9.0897 -11.5612 8.0614 26 6 2.8252 -1.8318 1.1020 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.0764 0.6422 2.5816 35 1 1.8889 -0.5078 4.5985 36 1 3.3033 -2.5097 4.3931 37 1 4.3490 -3.9903 4.0955 38 1 4.8701 -6.2934 2.5460 39 1 6.3278 -5.2720 2.5405 40 1 4.7839 -6.8756 6.1925 41 1 3.8274 -5.6724 5.2952 42 1 4.0517 -7.3074 4.6284 43 1 6.2619 -8.0450 3.8517 44 1 7.6234 -6.9024 3.7553 45 1 6.8771 -7.1703 6.4659 46 1 8.3585 -8.7184 9.0226 47 1 3.0865 -2.2006 0.1211 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753638413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:57 Heat of formation + Delta-G solvation = -45.706163 kcal Electronic energy + Delta-G solvation = -23791.876721 eV Core-core repulsion = 20358.919835 eV Total energy + Delta-G solvation = -3432.956886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.37084 -39.87166 -38.23315 -36.31665 -35.98309 -34.16038 -32.28255 -31.79332 -30.72793 -27.96014 -27.82952 -27.16910 -25.17708 -24.30383 -23.39933 -22.25084 -21.50652 -20.51241 -19.21558 -18.47929 -17.48853 -17.05650 -16.62489 -16.55733 -16.23982 -15.81322 -15.58019 -15.45719 -15.08439 -14.75159 -14.56929 -14.48819 -14.45285 -14.15597 -13.69078 -13.59014 -13.26556 -13.02164 -12.96834 -12.88159 -12.82864 -12.57799 -12.20922 -12.13876 -12.03253 -12.01123 -11.79197 -11.71689 -11.67541 -11.55985 -11.03921 -10.96002 -10.26274 -9.88727 -9.70176 -9.00006 -7.96217 -5.24402 -0.14702 0.39262 1.47594 1.47814 1.58183 1.82054 2.06970 2.56114 2.86401 3.37568 3.60449 3.67574 3.70102 3.89831 3.93969 4.04068 4.10722 4.18606 4.31693 4.32450 4.35290 4.48277 4.52295 4.54552 4.67960 4.73096 4.83642 4.86088 4.92317 4.98799 5.01320 5.02273 5.03677 5.11325 5.19894 5.27182 5.30857 5.34193 5.37711 5.40950 5.46111 5.47287 5.49809 5.64137 5.94766 6.26697 6.46451 7.12078 7.33575 8.08306 8.33053 9.27370 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.040581 B = 0.002049 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.804614 B =13661.146549 C =14019.873995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.060 4.060 3 C -0.142 4.142 4 C -0.087 4.087 5 C -0.087 4.087 6 C -0.121 4.121 7 C -0.092 4.092 8 C -0.150 4.150 9 C 0.552 3.448 10 O -0.584 6.584 11 N -0.708 5.708 12 C 0.137 3.863 13 C -0.094 4.094 14 H 0.080 0.920 15 C -0.136 4.136 16 C 0.156 3.844 17 N -0.741 5.741 18 C -0.246 4.246 19 H 0.073 0.927 20 C -0.075 4.075 21 N -0.967 5.967 22 Si 0.973 3.027 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.078 4.078 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.144 0.856 37 H 0.413 0.587 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.022 0.978 44 H 0.020 0.980 45 H 0.377 0.623 46 H 0.252 0.748 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.224 22.520 -12.400 31.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.087 4.087 5 C -0.105 4.105 6 C -0.139 4.139 7 C -0.110 4.110 8 C -0.153 4.153 9 C 0.341 3.659 10 O -0.466 6.466 11 N -0.360 5.360 12 C 0.013 3.987 13 C -0.113 4.113 14 H 0.098 0.902 15 C -0.193 4.193 16 C 0.029 3.971 17 N -0.384 5.384 18 C -0.378 4.378 19 H 0.091 0.909 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.802 3.198 23 H -0.193 1.193 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.097 4.097 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.162 0.838 37 H 0.251 0.749 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.038 0.962 45 H 0.210 0.790 46 H 0.061 0.939 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.892 22.055 -13.242 31.335 hybrid contribution 0.851 -0.960 0.859 1.544 sum -17.041 21.095 -12.383 29.811 Atomic orbital electron populations 1.21848 0.93112 1.01879 1.03038 1.20193 0.96865 0.96504 0.94255 1.21850 1.00760 0.94246 1.03041 1.20042 0.97328 0.94943 0.96431 1.21533 0.97994 0.99729 0.91210 1.21471 0.97159 0.94943 1.00327 1.21572 0.96953 0.96760 0.95754 1.19873 1.02696 0.96952 0.95755 1.18724 0.79528 0.83695 0.83904 1.90739 1.60128 1.68163 1.27562 1.45821 1.51972 1.28895 1.09311 1.21184 0.94359 0.86571 0.96592 1.21333 0.96848 0.97840 0.95257 0.90174 1.21735 0.96145 1.01366 1.00097 1.20723 0.94723 0.94400 0.87221 1.42500 1.53558 1.38984 1.03372 1.19666 1.17583 1.07988 0.92558 0.90863 1.25545 1.03132 1.02749 0.95276 1.69808 1.49553 1.44975 0.97460 0.85080 0.78224 0.78804 0.77677 1.19285 1.21949 1.21934 1.21195 0.95907 0.94751 0.97860 0.91367 0.91210 0.93386 0.91032 0.91367 0.93421 0.91203 0.83069 0.82388 0.83818 0.74879 0.91654 0.92011 0.93629 0.90629 0.92959 0.96030 0.96227 0.79029 0.93948 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.01 71.98 0.65 -0.68 16 2 C -0.06 -0.72 3.09 -11.54 -0.04 -0.76 16 3 C -0.14 -1.34 9.01 71.98 0.65 -0.69 16 4 C -0.09 -1.36 4.78 -19.90 -0.10 -1.46 16 5 C -0.09 -1.03 8.71 22.33 0.19 -0.84 16 6 C -0.12 -1.44 10.03 22.23 0.22 -1.21 16 7 C -0.09 -1.44 9.54 22.53 0.21 -1.22 16 8 C -0.15 -3.31 5.87 -20.09 -0.12 -3.43 16 9 C 0.55 15.31 7.77 86.78 0.67 15.99 16 10 O -0.58 -20.93 16.35 -3.87 -0.06 -20.99 16 11 N -0.71 -16.85 5.23 -465.98 -2.44 -19.29 16 12 C 0.14 3.81 5.06 86.38 0.44 4.25 16 13 C -0.09 -2.83 2.46 -10.79 -0.03 -2.86 16 14 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 15 C -0.14 -3.87 8.94 71.98 0.64 -3.23 16 16 C 0.16 6.24 5.65 86.38 0.49 6.72 16 17 N -0.74 -37.42 5.33 -343.44 -1.83 -39.25 16 18 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 19 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 20 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 21 N -0.97 -58.80 13.06 21.65 0.28 -58.52 16 22 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 26 C -0.08 -1.67 9.21 22.53 0.21 -1.47 16 27 H 0.07 0.49 7.38 -2.39 -0.02 0.47 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.97 7.87 -2.39 -0.02 0.95 16 31 H 0.07 0.50 7.38 -2.39 -0.02 0.48 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.15 0.98 7.08 -2.91 -0.02 0.96 16 35 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 36 H 0.14 1.64 6.40 -2.91 -0.02 1.62 16 37 H 0.41 7.46 5.69 -92.71 -0.53 6.93 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.04 1.55 7.18 -2.39 -0.02 1.53 16 41 H 0.07 1.62 7.18 -2.39 -0.02 1.61 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.38 19.87 6.85 -92.71 -0.64 19.23 16 46 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 47 H 0.12 2.81 7.53 -2.91 -0.02 2.79 16 Total: -1.00 -71.54 381.64 3.19 -68.35 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -0.20 Total: 29.02 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 5.41 Total: -7.74 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -3.99 Total: -117.06 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.06 Total: -20.99 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -71.54 3.19 -68.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.648 kcal (2) G-P(sol) polarization free energy of solvation -71.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds