Wall clock time and date at job start Tue Mar 31 2020 08:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31783 * 119.08556 * 2 1 4 4 C 1.32961 * 120.68228 * 179.97438 * 3 2 1 5 5 N 1.38536 * 120.53032 * 180.02562 * 4 3 2 6 6 C 1.46505 * 120.00341 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47200 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47000 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47185 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00294 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99820 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00269 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99943 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47030 * 90.00052 * 13 11 9 15 15 H 1.48493 * 109.47322 * 210.00131 * 13 11 9 16 16 H 1.48504 * 109.47309 * 330.00469 * 13 11 9 17 17 C 1.39672 * 118.93942 * 359.73624 * 4 3 2 18 18 C 1.38078 * 118.32951 * 0.54550 * 17 4 3 19 19 C 1.50695 * 120.39996 * 179.72070 * 18 17 4 20 20 H 1.09002 * 109.50479 * 204.72626 * 19 18 17 21 21 C 1.53121 * 109.53552 * 84.62432 * 19 18 17 22 22 C 1.53114 * 109.15992 * 182.38502 * 21 19 18 23 23 C 1.53036 * 109.28047 * 57.65972 * 22 21 19 24 24 N 1.46844 * 109.52085 * 300.81827 * 23 22 21 25 25 C 1.46847 * 111.19784 * 61.73796 * 24 23 22 26 26 N 1.31759 * 119.08043 * 180.02562 * 2 1 3 27 27 H 1.09008 * 109.47103 * 269.97955 * 1 2 3 28 28 H 1.09005 * 109.47100 * 29.97551 * 1 2 3 29 29 H 1.08993 * 109.47388 * 149.97935 * 1 2 3 30 30 H 0.97007 * 119.99897 * 0.02562 * 5 4 3 31 31 H 1.09006 * 109.46551 * 300.00183 * 6 5 4 32 32 H 1.09000 * 109.46949 * 60.00000 * 6 5 4 33 33 H 1.08998 * 109.46575 * 299.99318 * 7 6 5 34 34 H 1.08995 * 109.47091 * 59.99666 * 7 6 5 35 35 H 1.09003 * 109.47057 * 300.00016 * 8 7 6 36 36 H 1.09000 * 109.47301 * 59.99162 * 8 7 6 37 37 H 0.97005 * 120.00279 * 179.97438 * 12 11 9 38 38 H 1.07997 * 120.83847 * 180.28969 * 17 4 3 39 39 H 1.08999 * 109.52397 * 302.29585 * 21 19 18 40 40 H 1.09007 * 109.51903 * 62.47734 * 21 19 18 41 41 H 1.09002 * 109.50460 * 297.71044 * 22 21 19 42 42 H 1.09003 * 109.50241 * 177.59784 * 22 21 19 43 43 H 1.08993 * 109.46063 * 180.80377 * 23 22 21 44 44 H 1.08999 * 109.45181 * 60.82626 * 23 22 21 45 45 H 1.00906 * 111.00233 * 297.64693 * 24 23 22 46 46 H 1.08999 * 109.46500 * 178.23954 * 25 24 23 47 47 H 1.09004 * 109.45191 * 58.27467 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1516 0.0000 4 6 3.4767 1.1887 0.0005 5 7 4.1469 2.4011 0.0010 6 6 5.6117 2.4285 0.0010 7 6 6.0947 3.8802 0.0023 8 6 7.6245 3.9087 0.0017 9 6 8.1002 5.3386 0.0023 10 1 7.3833 6.1463 0.0035 11 6 9.4509 5.6157 0.0024 12 7 10.3240 4.6322 0.0014 13 14 10.0407 7.3881 0.0025 14 1 10.1969 7.8578 1.4026 15 1 11.3474 7.4750 -0.6975 16 1 9.0465 8.2407 -0.6976 17 6 4.1864 -0.0143 0.0067 18 6 3.4725 -1.1962 0.0004 19 6 4.1908 -2.5209 0.0003 20 1 3.5458 -3.2846 -0.4343 21 6 4.5472 -2.9103 1.4377 22 6 5.3284 -4.2270 1.4227 23 6 6.5790 -4.0627 0.5562 24 7 6.1850 -3.6911 -0.8087 25 6 5.4744 -2.4061 -0.8249 26 7 2.1474 -1.1515 -0.0005 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5141 30 1 3.6463 3.2321 0.0014 31 1 5.9845 1.9211 0.8908 32 1 5.9846 1.9219 -0.8892 33 1 5.7219 4.3879 -0.8873 34 1 5.7219 4.3864 0.8927 35 1 7.9977 3.4008 0.8910 36 1 7.9970 3.4026 -0.8889 37 1 11.2742 4.8272 0.0011 38 1 5.2663 -0.0200 0.0120 39 1 5.1600 -2.1281 1.8857 40 1 3.6332 -3.0354 2.0184 41 1 4.7012 -5.0176 1.0105 42 1 5.6219 -4.4876 2.4396 43 1 7.1300 -5.0028 0.5319 44 1 7.2120 -3.2815 0.9769 45 1 5.6288 -4.4172 -1.2349 46 1 5.2232 -2.1429 -1.8524 47 1 6.1129 -1.6328 -0.3978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:40 Heat of formation + Delta-G solvation = 18.968669 kcal Electronic energy + Delta-G solvation = -24492.084067 eV Core-core repulsion = 21094.224444 eV Total energy + Delta-G solvation = -3397.859623 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.196 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11558 -38.98566 -36.91410 -34.36384 -33.93465 -32.34242 -31.84033 -30.72800 -30.37517 -28.16403 -26.67296 -24.57096 -23.91431 -23.47519 -21.81346 -21.59375 -20.67842 -20.14293 -17.88257 -16.94636 -16.37569 -16.08972 -15.46063 -15.35053 -15.03937 -14.80859 -14.69022 -14.66068 -14.38836 -13.97445 -13.68888 -13.58929 -12.91191 -12.67831 -12.46495 -12.40331 -12.36371 -12.09024 -11.89480 -11.58799 -11.52983 -11.18149 -11.00154 -10.95118 -10.88621 -10.66460 -10.62599 -10.44956 -9.93651 -9.58243 -9.53382 -9.21494 -9.11379 -8.60537 -8.43176 -8.00284 -6.08004 -4.11106 1.09650 1.46881 3.12624 3.27524 3.34255 3.37357 3.81902 3.87361 4.08504 4.30954 4.39809 4.54099 4.63418 4.70871 4.83391 4.92432 5.08834 5.14198 5.24959 5.28230 5.33664 5.40120 5.45567 5.46105 5.48857 5.55352 5.60712 5.62658 5.68960 5.79733 5.82453 5.84894 5.88022 5.93638 6.07288 6.28237 6.44591 6.57498 6.73666 6.83066 6.91252 7.11823 7.39159 7.54322 7.65654 7.70353 7.89845 8.31013 8.38896 8.95079 9.53659 11.03223 Molecular weight = 304.20amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.003085 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.907516 B = 9073.835970 C =10989.887344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.357 3.643 3 N -0.587 5.587 4 C 0.444 3.556 5 N -0.704 5.704 6 C 0.120 3.880 7 C -0.121 4.121 8 C 0.026 3.974 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.893 3.107 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.295 4.295 18 C 0.212 3.788 19 C -0.072 4.072 20 H 0.090 0.910 21 C -0.108 4.108 22 C -0.155 4.155 23 C 0.052 3.948 24 N -0.680 5.680 25 C 0.062 3.938 26 N -0.568 5.568 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.406 0.594 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.262 0.738 38 H 0.143 0.857 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.340 0.660 46 H 0.079 0.921 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.637 -17.440 0.988 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.088 3.912 3 N -0.313 5.313 4 C 0.199 3.801 5 N -0.333 5.333 6 C -0.003 4.003 7 C -0.159 4.159 8 C -0.012 4.012 9 C -0.562 4.562 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.323 4.323 18 C 0.070 3.930 19 C -0.093 4.093 20 H 0.108 0.892 21 C -0.146 4.146 22 C -0.195 4.195 23 C -0.077 4.077 24 N -0.308 5.308 25 C -0.068 4.068 26 N -0.289 5.289 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.242 0.758 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.161 0.839 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.157 0.843 46 H 0.097 0.903 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.507 -17.185 0.809 22.504 hybrid contribution 0.273 1.179 0.488 1.305 sum -14.235 -16.006 1.297 21.459 Atomic orbital electron populations 1.20506 0.86229 1.03747 1.03508 1.22801 0.97371 0.82651 0.88394 1.67767 1.07742 1.31223 1.24546 1.18608 0.88027 0.87133 0.86298 1.44918 1.07073 1.04592 1.76764 1.21816 0.76359 1.00805 1.01338 1.21884 1.01012 0.91664 1.01305 1.19023 0.87056 0.97512 0.97609 1.21183 0.91699 0.92223 1.51129 0.92619 1.25015 0.96956 0.97239 0.95150 1.69951 1.01674 1.31167 1.50452 0.86577 0.78200 0.84989 0.78148 1.20623 1.21147 1.19857 1.21967 1.02369 0.92174 1.15824 1.21024 0.89232 0.94296 0.88492 1.20861 0.97156 0.93191 0.98073 0.89210 1.21556 1.00508 0.97633 0.94888 1.22264 0.98255 0.97339 1.01593 1.22092 0.96120 1.01814 0.87708 1.60688 1.46057 1.05047 1.18972 1.22182 0.91931 0.92690 1.00004 1.68028 1.09220 1.29871 1.21744 0.89972 0.89922 0.89879 0.75760 0.91868 0.91745 0.92452 0.92492 0.96287 0.96216 0.92869 0.83943 0.91353 0.91525 0.91852 0.91056 0.90545 0.90467 0.84265 0.90272 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.32 36.01 0.37 -0.42 16 2 C 0.36 4.93 7.64 -157.23 -1.20 3.73 16 3 N -0.59 -8.92 10.37 -9.96 -0.10 -9.02 16 4 C 0.44 6.75 7.71 -154.79 -1.19 5.55 16 5 N -0.70 -10.37 5.71 -60.26 -0.34 -10.72 16 6 C 0.12 1.89 4.93 -4.04 -0.02 1.87 16 7 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 8 C 0.03 0.62 4.97 -27.88 -0.14 0.48 16 9 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 10 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 13 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 C -0.30 -4.10 8.48 -39.10 -0.33 -4.43 16 18 C 0.21 2.77 5.82 -82.33 -0.48 2.29 16 19 C -0.07 -0.73 2.68 -91.69 -0.25 -0.98 16 20 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 21 C -0.11 -1.02 5.27 -26.61 -0.14 -1.16 16 22 C -0.16 -1.17 6.08 -26.65 -0.16 -1.34 16 23 C 0.05 0.42 6.55 -3.84 -0.03 0.40 16 24 N -0.68 -6.14 6.87 -113.82 -0.78 -6.92 16 25 C 0.06 0.62 5.31 -3.84 -0.02 0.60 16 26 N -0.57 -7.90 10.27 -7.07 -0.07 -7.98 16 27 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.41 5.70 8.60 -40.82 -0.35 5.35 16 31 H 0.06 0.99 7.96 -51.93 -0.41 0.57 16 32 H 0.06 1.01 7.99 -51.93 -0.41 0.59 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.14 1.86 5.23 -52.49 -0.27 1.58 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.34 2.57 8.86 -39.29 -0.35 2.22 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 0.90 6.53 -51.93 -0.34 0.56 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -30.53 376.30 -12.08 -42.60 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -8.02 Total: 4.53 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -4.14 Total: -8.94 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.57 Total: -60.07 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.53 -12.08 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.571 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds