Wall clock time and date at job start Tue Mar 31 2020 08:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31783 * 119.08556 * 2 1 4 4 C 1.32961 * 120.68228 * 179.97438 * 3 2 1 5 5 N 1.38536 * 120.53032 * 180.02562 * 4 3 2 6 6 C 1.46505 * 120.00341 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47200 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47000 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47185 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00294 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99820 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00269 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99943 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47030 * 90.00052 * 13 11 9 15 15 H 1.48493 * 109.47322 * 210.00131 * 13 11 9 16 16 H 1.48504 * 109.47309 * 330.00469 * 13 11 9 17 17 C 1.39672 * 118.93942 * 359.73624 * 4 3 2 18 18 C 1.38078 * 118.32951 * 0.54550 * 17 4 3 19 19 C 1.50695 * 120.39996 * 179.72070 * 18 17 4 20 20 H 1.09002 * 109.50479 * 204.72626 * 19 18 17 21 21 C 1.53121 * 109.53552 * 84.62432 * 19 18 17 22 22 C 1.53114 * 109.15992 * 182.38502 * 21 19 18 23 23 C 1.53036 * 109.28047 * 57.65972 * 22 21 19 24 24 N 1.46844 * 109.52085 * 300.81827 * 23 22 21 25 25 C 1.46847 * 111.19784 * 61.73796 * 24 23 22 26 26 N 1.31759 * 119.08043 * 180.02562 * 2 1 3 27 27 H 1.09008 * 109.47103 * 269.97955 * 1 2 3 28 28 H 1.09005 * 109.47100 * 29.97551 * 1 2 3 29 29 H 1.08993 * 109.47388 * 149.97935 * 1 2 3 30 30 H 0.97007 * 119.99897 * 0.02562 * 5 4 3 31 31 H 1.09006 * 109.46551 * 300.00183 * 6 5 4 32 32 H 1.09000 * 109.46949 * 60.00000 * 6 5 4 33 33 H 1.08998 * 109.46575 * 299.99318 * 7 6 5 34 34 H 1.08995 * 109.47091 * 59.99666 * 7 6 5 35 35 H 1.09003 * 109.47057 * 300.00016 * 8 7 6 36 36 H 1.09000 * 109.47301 * 59.99162 * 8 7 6 37 37 H 0.97005 * 120.00279 * 179.97438 * 12 11 9 38 38 H 1.07997 * 120.83847 * 180.28969 * 17 4 3 39 39 H 1.08999 * 109.52397 * 302.29585 * 21 19 18 40 40 H 1.09007 * 109.51903 * 62.47734 * 21 19 18 41 41 H 1.09002 * 109.50460 * 297.71044 * 22 21 19 42 42 H 1.09003 * 109.50241 * 177.59784 * 22 21 19 43 43 H 1.08993 * 109.46063 * 180.80377 * 23 22 21 44 44 H 1.08999 * 109.45181 * 60.82626 * 23 22 21 45 45 H 1.00906 * 111.00233 * 297.64693 * 24 23 22 46 46 H 1.08999 * 109.46500 * 178.23954 * 25 24 23 47 47 H 1.09004 * 109.45191 * 58.27467 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1516 0.0000 4 6 3.4767 1.1887 0.0005 5 7 4.1469 2.4011 0.0010 6 6 5.6117 2.4285 0.0010 7 6 6.0947 3.8802 0.0023 8 6 7.6245 3.9087 0.0017 9 6 8.1002 5.3386 0.0023 10 1 7.3833 6.1463 0.0035 11 6 9.4509 5.6157 0.0024 12 7 10.3240 4.6322 0.0014 13 14 10.0407 7.3881 0.0025 14 1 10.1969 7.8578 1.4026 15 1 11.3474 7.4750 -0.6975 16 1 9.0465 8.2407 -0.6976 17 6 4.1864 -0.0143 0.0067 18 6 3.4725 -1.1962 0.0004 19 6 4.1908 -2.5209 0.0003 20 1 3.5458 -3.2846 -0.4343 21 6 4.5472 -2.9103 1.4377 22 6 5.3284 -4.2270 1.4227 23 6 6.5790 -4.0627 0.5562 24 7 6.1850 -3.6911 -0.8087 25 6 5.4744 -2.4061 -0.8249 26 7 2.1474 -1.1515 -0.0005 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5141 30 1 3.6463 3.2321 0.0014 31 1 5.9845 1.9211 0.8908 32 1 5.9846 1.9219 -0.8892 33 1 5.7219 4.3879 -0.8873 34 1 5.7219 4.3864 0.8927 35 1 7.9977 3.4008 0.8910 36 1 7.9970 3.4026 -0.8889 37 1 11.2742 4.8272 0.0011 38 1 5.2663 -0.0200 0.0120 39 1 5.1600 -2.1281 1.8857 40 1 3.6332 -3.0354 2.0184 41 1 4.7012 -5.0176 1.0105 42 1 5.6219 -4.4876 2.4396 43 1 7.1300 -5.0028 0.5319 44 1 7.2120 -3.2815 0.9769 45 1 5.6288 -4.4172 -1.2349 46 1 5.2232 -2.1429 -1.8524 47 1 6.1129 -1.6328 -0.3978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:39 Heat of formation + Delta-G solvation = 0.111776 kcal Electronic energy + Delta-G solvation = -24492.901764 eV Core-core repulsion = 21094.224444 eV Total energy + Delta-G solvation = -3398.677319 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.196 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.15909 -39.78662 -38.17635 -35.81159 -35.18296 -33.95006 -32.57798 -32.06917 -31.33800 -29.11934 -28.40368 -25.45742 -25.24607 -24.60367 -22.86106 -22.65714 -22.12887 -21.07624 -19.04574 -18.47144 -17.94357 -16.88797 -16.66074 -16.51994 -16.37732 -15.98085 -15.87226 -15.76068 -15.48945 -14.96347 -14.51790 -14.44476 -14.28855 -14.16432 -13.73357 -13.42225 -13.31614 -13.20535 -13.12962 -12.81362 -12.61029 -12.41900 -12.36053 -12.29642 -12.22158 -11.76064 -11.68379 -11.60772 -11.51064 -11.38418 -11.22654 -10.60576 -10.55937 -10.21147 -9.33871 -9.15651 -8.21263 -6.31788 0.04391 0.35643 1.40742 1.41169 1.52142 1.94421 2.40913 2.80892 2.93312 3.12856 3.24627 3.44281 3.67919 3.77565 3.88606 4.00616 4.04296 4.11572 4.15000 4.27053 4.28358 4.46296 4.49248 4.52114 4.57403 4.60840 4.74734 4.82250 4.88168 4.89084 4.91194 4.95085 5.02612 5.04880 5.10083 5.12204 5.12681 5.32340 5.38630 5.49560 5.69173 5.74417 5.82626 6.01293 6.19837 6.26833 6.49024 6.56992 6.84689 7.30351 7.37585 8.90366 Molecular weight = 304.20amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.003085 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.907516 B = 9073.835970 C =10989.887344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.345 3.655 3 N -0.602 5.602 4 C 0.430 3.570 5 N -0.702 5.702 6 C 0.137 3.863 7 C -0.104 4.104 8 C 0.028 3.972 9 C -0.545 4.545 10 H 0.060 0.940 11 C 0.002 3.998 12 N -0.930 5.930 13 Si 0.962 3.038 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.264 1.264 17 C -0.305 4.305 18 C 0.211 3.789 19 C -0.063 4.063 20 H 0.096 0.904 21 C -0.105 4.105 22 C -0.146 4.146 23 C 0.052 3.948 24 N -0.686 5.686 25 C 0.068 3.932 26 N -0.575 5.575 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.410 0.590 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.061 0.939 35 H -0.002 1.002 36 H -0.001 1.001 37 H 0.264 0.736 38 H 0.146 0.854 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.350 0.650 46 H 0.075 0.925 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.675 -17.896 1.086 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.076 3.924 3 N -0.328 5.328 4 C 0.186 3.814 5 N -0.333 5.333 6 C 0.013 3.987 7 C -0.142 4.142 8 C -0.010 4.010 9 C -0.583 4.583 10 H 0.079 0.921 11 C -0.196 4.196 12 N -0.570 5.570 13 Si 0.787 3.213 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.188 1.188 17 C -0.333 4.333 18 C 0.068 3.932 19 C -0.084 4.084 20 H 0.114 0.886 21 C -0.143 4.143 22 C -0.185 4.185 23 C -0.077 4.077 24 N -0.315 5.315 25 C -0.062 4.062 26 N -0.296 5.296 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.246 0.754 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.163 0.837 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.169 0.831 46 H 0.093 0.907 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.576 -17.652 0.908 23.559 hybrid contribution 0.563 1.253 0.457 1.448 sum -15.013 -16.399 1.365 22.275 Atomic orbital electron populations 1.20632 0.83508 1.04784 1.04687 1.23616 0.99079 0.82264 0.87450 1.67818 1.07692 1.32038 1.25274 1.18791 0.88480 0.87344 0.86813 1.44686 1.06368 1.04883 1.77342 1.21470 0.77167 0.98602 1.01468 1.21587 0.97136 0.93827 1.01695 1.18903 0.90749 0.95788 0.95531 1.21663 0.92201 0.93693 1.50703 0.92150 1.25924 0.97264 1.01688 0.94763 1.70076 1.02014 1.33452 1.51492 0.85494 0.77723 0.79685 0.78441 1.19868 1.20829 1.18839 1.22068 1.02613 0.92251 1.16379 1.21470 0.89252 0.95190 0.87262 1.20867 0.96961 0.91861 0.98717 0.88599 1.21529 1.00356 0.98417 0.94007 1.22202 0.97758 0.96366 1.02208 1.22122 0.96337 1.02096 0.87193 1.60672 1.46076 1.04943 1.19760 1.22052 0.91592 0.93057 0.99522 1.68143 1.09495 1.29965 1.21996 0.88559 0.89180 0.88501 0.75370 0.91820 0.91692 0.92030 0.92044 0.98348 0.98305 0.92735 0.83662 0.92544 0.91978 0.90703 0.90028 0.88977 0.91708 0.83122 0.90696 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.32 71.24 0.73 -0.63 16 2 C 0.34 9.16 7.64 138.76 1.06 10.22 16 3 N -0.60 -17.94 10.37 -185.43 -1.92 -19.86 16 4 C 0.43 12.97 7.71 133.18 1.03 14.00 16 5 N -0.70 -20.50 5.71 -344.57 -1.97 -22.47 16 6 C 0.14 4.31 4.93 86.38 0.43 4.74 16 7 C -0.10 -3.93 5.27 30.59 0.16 -3.76 16 8 C 0.03 1.39 4.97 29.85 0.15 1.54 16 9 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 10 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 11 C 0.00 0.10 5.46 84.66 0.46 0.56 16 12 N -0.93 -55.33 13.29 21.45 0.28 -55.04 16 13 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 16 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 17 C -0.31 -8.48 8.48 22.58 0.19 -8.29 16 18 C 0.21 5.41 5.82 42.41 0.25 5.66 16 19 C -0.06 -1.24 2.68 -11.49 -0.03 -1.27 16 20 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 21 C -0.10 -1.89 5.27 30.67 0.16 -1.72 16 22 C -0.15 -1.95 6.08 30.64 0.19 -1.76 16 23 C 0.05 0.77 6.55 86.33 0.57 1.33 16 24 N -0.69 -11.60 6.87 -514.03 -3.53 -15.13 16 25 C 0.07 1.34 5.31 86.32 0.46 1.79 16 26 N -0.58 -15.47 10.27 -176.29 -1.81 -17.28 16 27 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.41 11.29 8.60 -92.70 -0.80 10.49 16 31 H 0.06 2.01 7.96 -2.38 -0.02 1.99 16 32 H 0.06 2.05 7.99 -2.39 -0.02 2.03 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 38 H 0.15 3.87 5.23 -2.91 -0.02 3.85 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.35 4.70 8.86 -89.69 -0.79 3.91 16 46 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.07 1.55 6.53 -2.38 -0.02 1.53 16 Total: -1.00 -64.98 376.30 -1.51 -66.49 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.62 Total: 25.20 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 6.03 Total: -7.37 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -8.94 Total: -129.79 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -64.98 -1.51 -66.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.605 kcal (2) G-P(sol) polarization free energy of solvation -64.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds