Wall clock time and date at job start Tue Mar 31 2020 08:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 113.99868 * 2 1 4 4 C 1.53006 * 109.47027 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47215 * 62.64793 * 4 3 2 6 6 C 1.46952 * 110.99942 * 176.37823 * 5 4 3 7 7 C 1.53046 * 109.36712 * 176.81377 * 6 5 4 8 8 N 1.46958 * 109.36344 * 58.39693 * 7 6 5 9 9 C 1.46902 * 111.00119 * 176.81029 * 8 7 6 10 10 C 1.50703 * 109.47093 * 170.00010 * 9 8 7 11 11 C 1.37638 * 120.12964 * 259.72725 * 10 9 8 12 12 C 1.38617 * 120.24768 * 179.70214 * 11 10 9 13 13 C 1.38654 * 120.49887 * 0.60037 * 12 11 10 14 14 C 1.37602 * 120.24855 * 359.68048 * 13 12 11 15 15 C 1.40694 * 120.12572 * 80.00556 * 10 9 8 16 16 C 1.41403 * 120.24384 * 0.02562 * 15 10 9 17 17 H 1.07997 * 119.99575 * 327.91392 * 16 15 10 18 18 C 1.39947 * 120.00048 * 147.91651 * 16 15 10 19 19 N 1.30821 * 119.99897 * 345.13539 * 18 16 15 20 20 Si 1.86795 * 119.99840 * 165.14247 * 18 16 15 21 21 H 1.48495 * 109.47383 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.46899 * 119.99944 * 20 18 16 23 23 H 1.48503 * 109.46995 * 239.99312 * 20 18 16 24 24 C 1.46952 * 110.88306 * 300.68373 * 8 7 6 25 25 C 1.46955 * 110.99895 * 52.58048 * 5 4 3 26 26 H 1.09003 * 109.47031 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47441 * 300.00106 * 1 2 3 28 28 H 1.09004 * 109.47159 * 60.00153 * 1 2 3 29 29 H 1.08999 * 109.47480 * 60.00067 * 3 2 1 30 30 H 1.09002 * 109.47342 * 299.99352 * 3 2 1 31 31 H 1.09007 * 109.47088 * 302.65051 * 4 3 2 32 32 H 1.08998 * 109.47051 * 182.64896 * 4 3 2 33 33 H 1.09003 * 109.49072 * 56.84205 * 6 5 4 34 34 H 1.09006 * 109.48987 * 296.77888 * 6 5 4 35 35 H 1.08994 * 109.49302 * 178.36612 * 7 6 5 36 36 H 1.09003 * 109.48747 * 298.41695 * 7 6 5 37 37 H 1.08996 * 109.47316 * 290.00534 * 9 8 7 38 38 H 1.09002 * 109.46657 * 50.00368 * 9 8 7 39 39 H 1.07996 * 119.87473 * 0.02562 * 11 10 9 40 40 H 1.07997 * 119.75029 * 180.30888 * 12 11 10 41 41 H 1.08000 * 119.87678 * 179.70265 * 13 12 11 42 42 H 1.08007 * 120.12582 * 180.02562 * 14 13 12 43 43 H 0.96999 * 119.99841 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.49072 * 179.29017 * 24 8 7 45 45 H 1.09000 * 109.49195 * 299.34966 * 24 8 7 46 46 H 1.09003 * 109.48977 * 63.21549 * 25 5 4 47 47 H 1.09005 * 109.50387 * 303.16547 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9728 0.5119 -1.2311 6 6 5.4393 0.4545 -1.3071 7 6 5.8526 -0.3215 -2.5599 8 7 5.2918 0.3370 -3.7480 9 6 5.7293 -0.3357 -4.9785 10 6 4.9499 0.2037 -6.1502 11 6 3.8837 -0.5048 -6.6558 12 6 3.1614 -0.0080 -7.7295 13 6 3.5106 1.1998 -8.3141 14 6 4.5763 1.9223 -7.8287 15 6 5.3131 1.4307 -6.7351 16 6 6.4105 2.1642 -6.2282 17 1 6.6476 2.1228 -5.1754 18 6 7.1894 2.9438 -7.0908 19 7 7.0983 2.7770 -8.3851 20 14 8.3593 4.2225 -6.3939 21 1 8.2754 4.2145 -4.9114 22 1 9.7478 3.9038 -6.8133 23 1 7.9845 5.5661 -6.9033 24 6 3.8253 0.3944 -3.6720 25 6 3.4121 1.1704 -2.4192 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8542 0.6031 0.8644 32 1 3.9787 2.1793 0.0468 33 1 5.8299 -0.0484 -0.4224 34 1 5.8407 1.4667 -1.3574 35 1 6.9398 -0.3404 -2.6338 36 1 5.4744 -1.3419 -2.4968 37 1 6.7925 -0.1530 -5.1342 38 1 5.5542 -1.4078 -4.8883 39 1 3.6057 -1.4488 -6.2110 40 1 2.3232 -0.5682 -8.1166 41 1 2.9437 1.5751 -9.1532 42 1 4.8464 2.8631 -8.2853 43 1 7.6384 3.3171 -8.9829 44 1 3.4347 0.8973 -4.5566 45 1 3.4239 -0.6177 -3.6217 46 1 3.7905 2.1907 -2.4821 47 1 2.3248 1.1897 -2.3455 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235513607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:20 Heat of formation + Delta-G solvation = -9.317026 kcal Electronic energy + Delta-G solvation = -25751.673853 eV Core-core repulsion = 22320.294918 eV Total energy + Delta-G solvation = -3431.378934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.30522 -38.04934 -37.25030 -34.98693 -33.51438 -31.27787 -30.39544 -29.55005 -29.24760 -26.79444 -25.85174 -25.02947 -23.71128 -22.87209 -21.39937 -20.91793 -19.59445 -19.10863 -17.05879 -16.68255 -16.45706 -15.54607 -15.21926 -15.09248 -14.72410 -14.59395 -14.31334 -14.15736 -13.93156 -13.71564 -13.30475 -13.20047 -12.61098 -12.48037 -12.06289 -11.90421 -11.72030 -11.53072 -11.37983 -11.26897 -11.17664 -11.02128 -10.88971 -10.86898 -10.53992 -10.41933 -10.25741 -10.17458 -9.68386 -9.44110 -9.21770 -9.12056 -8.12231 -7.62224 -7.30682 -7.20107 -6.66316 -4.26417 2.81520 2.96995 3.13348 3.20045 3.26802 3.70148 4.02374 4.04699 4.58362 4.76561 4.89174 5.01297 5.19444 5.19656 5.25616 5.33163 5.47016 5.48855 5.57006 5.61176 5.69780 5.74905 5.79391 5.86318 5.90681 6.05996 6.13714 6.22049 6.26594 6.28381 6.48770 6.51053 6.53970 6.67874 6.91683 7.04701 7.18916 7.23957 7.26576 7.28649 7.41375 7.66096 7.72406 7.82996 7.98577 8.08947 8.20862 8.37040 8.74430 8.99821 9.06303 10.31275 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.004335 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.242581 B = 6457.172107 C = 7466.858152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.059 3.941 4 C 0.057 3.943 5 N -0.530 5.530 6 C 0.060 3.940 7 C 0.057 3.943 8 N -0.526 5.526 9 C 0.126 3.874 10 C -0.194 4.194 11 C -0.087 4.087 12 C -0.240 4.240 13 C -0.107 4.107 14 C -0.158 4.158 15 C 0.133 3.867 16 C -0.453 4.453 17 H 0.092 0.908 18 C 0.074 3.926 19 N -0.803 5.803 20 Si 0.902 3.098 21 H -0.260 1.260 22 H -0.277 1.277 23 H -0.275 1.275 24 C 0.066 3.934 25 C 0.056 3.944 26 H 0.084 0.916 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.015 0.985 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.277 0.723 44 H 0.091 0.909 45 H 0.030 0.970 46 H 0.039 0.961 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 -1.573 13.630 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C -0.018 4.018 4 C -0.071 4.071 5 N -0.256 5.256 6 C -0.068 4.068 7 C -0.071 4.071 8 N -0.251 5.251 9 C 0.000 4.000 10 C -0.195 4.195 11 C -0.106 4.106 12 C -0.260 4.260 13 C -0.126 4.126 14 C -0.177 4.177 15 C 0.130 3.870 16 C -0.483 4.483 17 H 0.110 0.890 18 C -0.142 4.142 19 N -0.429 5.429 20 Si 0.727 3.273 21 H -0.184 1.184 22 H -0.203 1.203 23 H -0.201 1.201 24 C -0.062 4.062 25 C -0.072 4.072 26 H 0.102 0.898 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.033 0.967 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.048 0.952 46 H 0.058 0.942 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.066 -1.661 13.422 14.822 hybrid contribution 0.309 0.861 0.065 0.917 sum -5.757 -0.800 13.486 14.685 Atomic orbital electron populations 1.22723 0.81810 1.02585 0.99563 1.88022 1.18778 1.27100 1.95222 1.22666 0.93721 0.85350 1.00013 1.22103 0.93241 0.97571 0.94174 1.62182 1.09032 1.52842 1.01524 1.22130 0.87228 0.99612 0.97840 1.22090 0.99415 0.95629 0.89995 1.62247 1.08560 1.52848 1.01397 1.20637 0.99693 0.92816 0.86813 1.19526 1.01071 0.97276 1.01676 1.20409 0.95795 0.97663 0.96747 1.20308 1.03842 0.99524 1.02306 1.20669 0.97774 0.95572 0.98583 1.21232 0.95622 1.00387 1.00487 1.17374 0.90792 0.89066 0.89724 1.19738 1.09699 1.22404 0.96421 0.89010 1.25909 0.97430 0.96401 0.94445 1.69832 1.35209 1.34415 1.03488 0.86358 0.79688 0.80599 0.80630 1.18368 1.20282 1.20074 1.22065 0.88464 0.98621 0.97062 1.22275 0.99006 0.96322 0.89625 0.89793 0.94594 0.94203 0.93310 0.92819 0.90171 0.93553 0.91007 0.94117 0.90736 0.94812 0.90422 0.96725 0.89893 0.89755 0.89691 0.87351 0.91253 0.89120 0.95174 0.94240 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.37 -4.75 10.61 -35.23 -0.37 -5.12 16 3 C 0.06 0.65 5.59 37.16 0.21 0.86 16 4 C 0.06 0.67 5.52 -3.82 -0.02 0.65 16 5 N -0.53 -7.68 4.73 -234.46 -1.11 -8.79 16 6 C 0.06 0.85 5.62 -3.77 -0.02 0.83 16 7 C 0.06 0.91 5.58 -3.77 -0.02 0.89 16 8 N -0.53 -9.94 4.57 -235.91 -1.08 -11.02 16 9 C 0.13 2.61 4.64 -4.97 -0.02 2.59 16 10 C -0.19 -4.51 3.75 -103.91 -0.39 -4.90 16 11 C -0.09 -1.94 8.70 -39.66 -0.34 -2.28 16 12 C -0.24 -5.37 10.05 -39.29 -0.39 -5.77 16 13 C -0.11 -2.52 10.02 -39.66 -0.40 -2.92 16 14 C -0.16 -4.06 8.65 -38.87 -0.34 -4.40 16 15 C 0.13 3.43 5.49 -106.82 -0.59 2.84 16 16 C -0.45 -11.68 8.02 -37.74 -0.30 -11.98 16 17 H 0.09 2.35 7.08 -52.49 -0.37 1.98 16 18 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 19 N -0.80 -20.89 11.31 55.55 0.63 -20.26 16 20 Si 0.90 18.96 29.58 -169.99 -5.03 13.93 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 C 0.07 1.21 4.89 -3.77 -0.02 1.19 16 25 C 0.06 0.87 5.13 -3.77 -0.02 0.85 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.60 6.09 -51.93 -0.32 0.28 16 31 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 1.69 7.44 -51.93 -0.39 1.30 16 38 H 0.01 0.29 7.94 -51.93 -0.41 -0.12 16 39 H 0.08 1.68 8.03 -52.49 -0.42 1.26 16 40 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.08 1.80 8.06 -52.49 -0.42 1.37 16 42 H 0.11 2.90 6.64 -52.48 -0.35 2.55 16 43 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 44 H 0.09 1.88 6.23 -51.93 -0.32 1.55 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 1.08 5.95 -51.93 -0.31 0.78 16 LS Contribution 367.45 15.07 5.54 5.54 Total: -1.00 -27.87 367.45 -11.01 -38.88 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.94 Total: 5.21 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -1.65 Total: -18.37 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -1.56 Total: -40.06 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.37 Total: -5.12 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.87 -11.01 -38.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235513607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.559 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds