Wall clock time and date at job start Tue Mar 31 2020 08:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47390 * 2 1 4 4 C 1.46501 * 120.00262 * 270.00173 * 3 2 1 5 5 C 1.52998 * 109.47280 * 269.99944 * 4 3 2 6 6 C 1.38991 * 119.99750 * 89.99756 * 3 2 1 7 7 C 1.39175 * 120.04697 * 5.00523 * 6 3 2 8 8 N 1.32033 * 120.08094 * 180.02562 * 7 6 3 9 9 C 1.32067 * 120.17189 * 359.97438 * 8 7 6 10 10 C 1.39126 * 120.08141 * 359.97438 * 9 8 7 11 11 N 1.38996 * 120.03912 * 179.97438 * 10 9 8 12 12 C 1.46503 * 120.00069 * 0.02562 * 11 10 9 13 13 H 1.09007 * 109.40835 * 35.13736 * 12 11 10 14 14 C 1.52961 * 109.41437 * 154.99521 * 12 11 10 15 15 C 1.53225 * 109.40185 * 183.70406 * 14 12 11 16 16 C 1.51267 * 108.53929 * 305.37600 * 15 14 12 17 17 C 1.37885 * 120.84902 * 231.32736 * 16 15 14 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 16 15 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 16 15 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 16 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 16 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 16 23 23 C 1.51265 * 118.30210 * 51.59623 * 16 15 14 24 24 C 1.52954 * 109.41145 * 275.35063 * 12 11 10 25 25 N 1.32736 * 120.03975 * 185.25728 * 6 3 2 26 26 H 1.08997 * 109.47278 * 300.00263 * 1 2 3 27 27 H 1.09001 * 109.47114 * 60.00001 * 1 2 3 28 28 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46970 * 240.00111 * 2 1 3 30 30 H 1.09001 * 109.47114 * 119.99999 * 2 1 3 31 31 H 1.09004 * 109.46811 * 29.99299 * 4 3 2 32 32 H 1.09000 * 109.47261 * 149.99505 * 4 3 2 33 33 H 1.08999 * 109.46974 * 299.99810 * 5 4 3 34 34 H 1.09010 * 109.46841 * 59.99685 * 5 4 3 35 35 H 1.08994 * 109.47322 * 179.97438 * 5 4 3 36 36 H 1.08005 * 119.95393 * 0.03632 * 7 6 3 37 37 H 1.08001 * 119.95528 * 180.02562 * 9 8 7 38 38 H 0.97003 * 120.00001 * 179.97438 * 11 10 9 39 39 H 1.08992 * 109.47967 * 63.72575 * 14 12 11 40 40 H 1.09002 * 109.49410 * 303.69176 * 14 12 11 41 41 H 1.09002 * 109.62848 * 185.65947 * 15 14 12 42 42 H 1.08999 * 109.78770 * 65.18096 * 15 14 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 18 17 16 44 44 H 1.08993 * 109.62491 * 68.12028 * 23 16 15 45 45 H 1.08999 * 109.62983 * 188.69155 * 23 16 15 46 46 H 1.09001 * 109.48614 * 296.27238 * 24 12 11 47 47 H 1.09002 * 109.48431 * 56.30231 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2500 2.0364 1.2037 7 6 2.1187 1.3499 2.4073 8 7 2.3381 1.9717 3.5511 9 6 2.6832 3.2465 3.5581 10 6 2.8175 3.9392 2.3590 11 7 3.1803 5.2809 2.3674 12 6 3.4220 5.9665 3.6394 13 1 3.8792 5.2718 4.3441 14 6 4.3635 7.1496 3.4084 15 6 4.6897 7.8103 4.7518 16 6 3.3910 8.1719 5.4380 17 6 3.1767 9.4459 5.9197 18 7 4.1079 10.3649 5.7858 19 14 1.5636 9.8666 6.7625 20 1 0.5893 10.3525 5.7526 21 1 1.0226 8.6549 7.4292 22 1 1.7964 10.9269 7.7759 23 6 2.3359 7.0983 5.5876 24 6 2.0928 6.4649 4.2089 25 7 2.5918 3.3189 1.2071 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5818 1.6877 -2.0284 32 1 2.0956 3.1411 -1.1384 33 1 4.3883 2.2155 -0.9508 34 1 3.8744 0.7621 -1.8408 35 1 3.8891 2.3449 -2.6545 36 1 1.8372 0.3072 2.4054 37 1 2.8622 3.7516 4.4958 38 1 3.2741 5.7632 1.5310 39 1 3.8812 7.8755 2.7539 40 1 5.2842 6.7965 2.9438 41 1 5.2780 8.7123 4.5830 42 1 5.2533 7.1174 5.3767 43 1 3.9569 11.2612 6.1244 44 1 2.6838 6.3380 6.2868 45 1 1.4112 7.5426 5.9559 46 1 1.6642 7.2071 3.5354 47 1 1.4040 5.6264 4.3116 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:45 Heat of formation + Delta-G solvation = 43.875733 kcal Electronic energy + Delta-G solvation = -25213.894228 eV Core-core repulsion = 21817.114656 eV Total energy + Delta-G solvation = -3396.779572 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.196 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78712 -38.17938 -37.17847 -34.69554 -33.39118 -32.31077 -31.77566 -30.13180 -29.62636 -28.05344 -26.99507 -24.48614 -24.04213 -22.86174 -21.95461 -21.52562 -20.50457 -19.49796 -17.72909 -17.47757 -16.31496 -16.16267 -15.71730 -15.55062 -14.80723 -14.56748 -14.44459 -14.01609 -13.95779 -13.56729 -13.33905 -12.96314 -12.76108 -12.61338 -12.38698 -12.20536 -12.07354 -11.93457 -11.77757 -11.35714 -11.30145 -11.25635 -11.01325 -10.97031 -10.86807 -10.74852 -10.43834 -10.14338 -10.00033 -9.59033 -9.04961 -8.82683 -8.72844 -8.51225 -8.16047 -7.19821 -6.14904 -4.06167 1.52668 1.72179 2.67811 3.24705 3.34263 3.35850 3.49332 4.19923 4.35152 4.54772 4.74449 4.80042 4.89942 4.93318 5.03881 5.11120 5.13076 5.20082 5.27265 5.38892 5.50967 5.54733 5.58846 5.63145 5.63874 5.77458 5.86677 5.91342 6.04717 6.06864 6.37968 6.42553 6.51029 6.64212 6.70898 6.78671 6.79621 6.95175 7.04400 7.19314 7.35865 7.40274 7.60075 7.65603 7.73585 7.88226 8.01184 8.32121 8.41659 8.91415 9.49931 10.94545 Molecular weight = 304.20amu Principal moments of inertia in cm(-1) A = 0.025945 B = 0.003092 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.950170 B = 9053.817004 C = 9510.123876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.122 3.878 3 N -0.604 5.604 4 C 0.124 3.876 5 C -0.165 4.165 6 C 0.405 3.595 7 C -0.097 4.097 8 N -0.372 5.372 9 C -0.076 4.076 10 C 0.413 3.587 11 N -0.703 5.703 12 C 0.160 3.840 13 H 0.075 0.925 14 C -0.113 4.113 15 C 0.013 3.987 16 C -0.491 4.491 17 C 0.077 3.923 18 N -0.889 5.889 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.266 1.266 22 H -0.290 1.290 23 C -0.014 4.014 24 C -0.120 4.120 25 N -0.571 5.571 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.399 0.601 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.061 0.939 42 H 0.007 0.993 43 H 0.265 0.735 44 H 0.020 0.980 45 H 0.032 0.968 46 H 0.055 0.945 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 -17.795 -13.107 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.001 4.001 3 N -0.319 5.319 4 C 0.000 4.000 5 C -0.224 4.224 6 C 0.166 3.834 7 C -0.263 4.263 8 N -0.084 5.084 9 C -0.245 4.245 10 C 0.171 3.829 11 N -0.332 5.332 12 C 0.057 3.943 13 H 0.093 0.907 14 C -0.151 4.151 15 C -0.025 4.025 16 C -0.510 4.510 17 C -0.126 4.126 18 N -0.526 5.526 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.191 1.191 22 H -0.216 1.216 23 C -0.052 4.052 24 C -0.159 4.159 25 N -0.304 5.304 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.170 0.830 37 H 0.180 0.820 38 H 0.234 0.766 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.026 0.974 43 H 0.075 0.925 44 H 0.039 0.961 45 H 0.051 0.949 46 H 0.074 0.926 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.051 -17.586 -12.995 22.238 hybrid contribution -0.872 0.601 -0.090 1.063 sum -4.922 -16.985 -13.086 21.999 Atomic orbital electron populations 1.22239 0.96115 1.02090 1.02724 1.21456 0.94131 0.81530 1.03016 1.46497 1.69898 1.12926 1.02535 1.21322 0.95787 0.98786 0.84068 1.22140 0.97591 1.01299 1.01361 1.18942 0.89380 0.88140 0.86942 1.22540 1.15371 1.01274 0.87154 1.67981 1.03701 1.08483 1.28224 1.22799 1.12099 0.91734 0.97850 1.19116 0.87856 0.86648 0.89284 1.45233 1.71589 1.05988 1.10367 1.21193 0.96963 0.93747 0.82417 0.90707 1.21915 0.96020 0.95329 1.01843 1.19338 0.96452 0.96733 0.89933 1.20033 1.00024 0.94060 1.36923 1.24846 0.96639 0.95773 0.95338 1.69831 1.33483 1.03518 1.45796 0.86665 0.84052 0.77942 0.79750 1.20442 1.19087 1.21627 1.19808 0.96882 0.96552 0.91929 1.22124 0.95080 0.98685 1.00044 1.67283 1.26070 1.08625 1.28407 0.92119 0.92492 0.91551 0.90420 0.90212 0.91433 0.89588 0.92318 0.93070 0.91950 0.83030 0.82042 0.76560 0.92557 0.94415 0.92023 0.97449 0.92530 0.96116 0.94914 0.92627 0.94473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 37.16 0.38 -0.83 16 2 C 0.12 0.91 5.98 -4.04 -0.02 0.89 16 3 N -0.60 -6.43 2.59 -173.73 -0.45 -6.88 16 4 C 0.12 1.18 6.20 -4.04 -0.03 1.15 16 5 C -0.17 -1.47 10.24 37.16 0.38 -1.09 16 6 C 0.40 5.70 7.37 -154.73 -1.14 4.56 16 7 C -0.10 -1.38 10.42 -17.12 -0.18 -1.56 16 8 N -0.37 -6.16 10.48 -12.70 -0.13 -6.29 16 9 C -0.08 -1.29 9.95 -17.12 -0.17 -1.46 16 10 C 0.41 6.90 7.64 -154.72 -1.18 5.71 16 11 N -0.70 -11.47 5.24 -53.89 -0.28 -11.75 16 12 C 0.16 2.90 2.04 -67.97 -0.14 2.76 16 13 H 0.07 1.37 6.47 -51.92 -0.34 1.04 16 14 C -0.11 -2.21 5.40 -26.63 -0.14 -2.36 16 15 C 0.01 0.31 5.97 -27.49 -0.16 0.15 16 16 C -0.49 -12.41 5.50 -98.92 -0.54 -12.95 16 17 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 18 N -0.89 -24.95 12.73 55.43 0.71 -24.24 16 19 Si 0.89 20.74 27.28 -169.99 -4.64 16.10 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.27 -6.04 6.45 56.52 0.36 -5.67 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.01 -0.30 5.62 -27.26 -0.15 -0.46 16 24 C -0.12 -2.35 5.42 -26.41 -0.14 -2.50 16 25 N -0.57 -9.03 9.28 -11.43 -0.11 -9.13 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 30 H 0.08 0.56 5.99 -51.93 -0.31 0.25 16 31 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 32 H 0.09 0.98 7.31 -51.93 -0.38 0.60 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.15 1.74 6.02 -52.48 -0.32 1.42 16 37 H 0.16 2.73 6.11 -52.49 -0.32 2.41 16 38 H 0.40 6.14 8.73 -40.82 -0.36 5.78 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 1.60 7.07 -51.93 -0.37 1.24 16 42 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.03 0.74 4.77 -51.93 -0.25 0.49 16 46 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.04 0.69 7.68 -51.93 -0.40 0.29 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -28.33 365.89 -10.43 -38.75 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.69 Total: 3.96 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -3.34 Total: -6.03 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.27 Total: -58.30 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.64 Total: 16.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.33 -10.43 -38.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.630 kcal (2) G-P(sol) polarization free energy of solvation -28.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds