Wall clock time and date at job start Tue Mar 31 2020 08:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47257 * 2 1 4 4 N 1.46497 * 109.46861 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00161 * 293.76001 * 4 3 2 6 6 H 1.08001 * 120.00116 * 149.38855 * 5 4 3 7 7 C 1.38809 * 120.00068 * 329.38789 * 5 4 3 8 8 N 1.31620 * 119.99899 * 337.58454 * 7 5 4 9 9 Si 1.86795 * 120.00110 * 157.58793 * 7 5 4 10 10 H 1.48500 * 109.47410 * 89.99765 * 9 7 5 11 11 H 1.48501 * 109.47203 * 210.00050 * 9 7 5 12 12 H 1.48505 * 109.47209 * 329.99461 * 9 7 5 13 13 S 1.65599 * 119.99621 * 113.75879 * 4 3 2 14 14 O 1.42102 * 106.40310 * 203.53883 * 13 4 3 15 15 O 1.42100 * 106.40416 * 336.46012 * 13 4 3 16 16 C 1.76206 * 107.21688 * 90.00135 * 13 4 3 17 17 C 1.38211 * 119.97196 * 269.72111 * 16 13 4 18 18 C 1.38474 * 120.01813 * 179.76666 * 17 16 13 19 19 F 1.35101 * 120.00762 * 180.27440 * 18 17 16 20 20 C 1.38410 * 119.97977 * 0.53066 * 18 17 16 21 21 C 1.38423 * 119.95161 * 359.72599 * 20 18 17 22 22 F 1.35095 * 120.01543 * 179.97438 * 21 20 18 23 23 C 1.38210 * 119.97688 * 89.99762 * 16 13 4 24 24 H 1.08991 * 109.47280 * 300.00344 * 1 2 3 25 25 H 1.09007 * 109.46612 * 60.00452 * 1 2 3 26 26 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46790 * 239.99680 * 2 1 3 28 28 H 1.09001 * 109.46298 * 119.99849 * 2 1 3 29 29 H 1.09004 * 109.46974 * 299.99875 * 3 2 1 30 30 H 1.09000 * 109.47062 * 59.99530 * 3 2 1 31 31 H 0.97000 * 119.99840 * 180.02562 * 8 7 5 32 32 H 1.08000 * 119.98821 * 0.02562 * 17 16 13 33 33 H 1.07998 * 120.02968 * 179.69819 * 20 18 17 34 34 H 1.08000 * 119.98080 * 359.97438 * 23 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 0.9647 1.0863 6 1 5.1565 0.5024 0.9546 7 6 3.6399 1.0746 2.3563 8 7 2.7223 1.9863 2.5997 9 14 4.2028 -0.0713 3.7199 10 1 5.3528 0.5378 4.4352 11 1 3.0864 -0.2911 4.6742 12 1 4.6166 -1.3718 3.1343 13 16 4.3336 2.0199 -1.3118 14 8 5.6165 1.4099 -1.2767 15 8 3.4523 1.9133 -2.4214 16 6 4.5944 3.7424 -1.0472 17 6 3.6627 4.6589 -1.4969 18 6 3.8643 6.0124 -1.2853 19 9 2.9507 6.9077 -1.7201 20 6 5.0046 6.4481 -0.6328 21 6 5.9396 5.5297 -0.1875 22 9 7.0533 5.9535 0.4490 23 6 5.7331 4.1763 -0.3952 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 2.3386 2.0633 3.4873 32 1 2.7751 4.3190 -2.0099 33 1 5.1650 7.5039 -0.4717 34 1 6.4624 3.4594 -0.0478 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128055607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:16 Heat of formation + Delta-G solvation = -140.579487 kcal Electronic energy + Delta-G solvation = -23607.604432 eV Core-core repulsion = 19689.672020 eV Total energy + Delta-G solvation = -3917.932411 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 305.068 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.79298 -48.75683 -38.28165 -36.53755 -35.92116 -34.49846 -32.74092 -31.26672 -30.81097 -30.00136 -26.16557 -23.99931 -23.21206 -22.57291 -20.66626 -18.86549 -18.24755 -17.02521 -16.85235 -16.56027 -16.16115 -15.74505 -15.41971 -15.26708 -15.08793 -14.93423 -14.44201 -14.10443 -14.00799 -13.51516 -12.94003 -12.52775 -12.10149 -12.06673 -11.81553 -11.75748 -11.71813 -11.61705 -11.18276 -11.06570 -10.78067 -10.74734 -10.66812 -10.54046 -10.20289 -10.01933 -9.76201 -9.51675 -9.03103 -8.46655 -8.07565 -6.73409 -4.27934 0.95419 1.26318 1.62712 2.98727 3.06252 3.13427 3.47406 3.83714 4.09142 4.32102 4.54869 4.56681 4.87452 5.00879 5.04083 5.43674 5.64711 5.66208 5.74114 5.78833 5.97063 5.99859 6.16116 6.18733 6.27825 6.45480 6.50240 6.54754 6.69826 6.82477 7.03055 7.03644 7.22791 7.42071 8.10421 8.46465 8.94613 10.13981 Molecular weight = 305.07amu Principal moments of inertia in cm(-1) A = 0.013638 B = 0.006577 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.637927 B = 4256.276280 C = 4990.017366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.112 3.888 4 N -0.789 5.789 5 C -0.228 4.228 6 H 0.117 0.883 7 C 0.038 3.962 8 N -0.810 5.810 9 Si 0.924 3.076 10 H -0.270 1.270 11 H -0.277 1.277 12 H -0.260 1.260 13 S 2.501 3.499 14 O -0.980 6.980 15 O -0.998 6.998 16 C -0.592 4.592 17 C -0.077 4.077 18 C 0.101 3.899 19 F -0.137 7.137 20 C -0.167 4.167 21 C 0.103 3.897 22 F -0.136 7.136 23 C -0.066 4.066 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.279 0.721 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 2.890 -0.240 3.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.014 4.014 4 N -0.611 5.611 5 C -0.380 4.380 6 H 0.134 0.866 7 C -0.178 4.178 8 N -0.448 5.448 9 Si 0.748 3.252 10 H -0.195 1.195 11 H -0.202 1.202 12 H -0.184 1.184 13 S 2.601 3.399 14 O -0.970 6.970 15 O -0.988 6.988 16 C -0.667 4.667 17 C -0.097 4.097 18 C 0.081 3.919 19 F -0.116 7.116 20 C -0.187 4.187 21 C 0.083 3.917 22 F -0.115 7.115 23 C -0.086 4.086 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.077 2.797 -1.167 3.216 hybrid contribution 0.275 0.898 1.085 1.435 sum -0.803 3.694 -0.082 3.781 Atomic orbital electron populations 1.21699 0.96621 1.00698 1.01400 1.21650 0.94206 0.98114 1.02147 1.21604 0.79288 0.97047 1.03433 1.54221 1.12476 1.59625 1.34775 1.20036 1.06202 1.26862 0.84887 0.86557 1.25879 0.96646 0.96400 0.98883 1.69902 1.24112 1.27770 1.23002 0.85939 0.78878 0.80776 0.79580 1.19548 1.20171 1.18403 1.13225 0.74229 0.74109 0.78342 1.93347 1.41694 1.74314 1.87643 1.93339 1.65087 1.86262 1.54089 1.32638 0.98322 1.31366 1.04347 1.20899 0.99994 0.90398 0.98404 1.17420 0.88016 0.87005 0.99446 1.91493 1.65069 1.67325 1.87668 1.21000 0.94366 1.00802 1.02564 1.17464 0.84295 0.92727 0.97243 1.91496 1.49775 1.90673 1.79508 1.20945 0.97461 0.93851 0.96365 0.92828 0.93197 0.93432 0.92835 0.91248 0.92160 0.87590 0.91017 0.83397 0.83845 0.82986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.12 -2.23 5.98 -26.73 -0.16 -2.39 16 3 C 0.11 2.30 5.12 -4.04 -0.02 2.28 16 4 N -0.79 -17.55 2.98 -59.91 -0.18 -17.73 16 5 C -0.23 -5.17 8.67 -15.06 -0.13 -5.30 16 6 H 0.12 2.64 7.34 -52.49 -0.39 2.26 16 7 C 0.04 0.82 4.63 -17.43 -0.08 0.74 16 8 N -0.81 -17.93 11.06 55.49 0.61 -17.32 16 9 Si 0.92 17.10 29.61 -169.99 -5.03 12.06 16 10 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 11 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 12 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 13 S 2.50 56.27 5.63 -107.50 -0.61 55.67 16 14 O -0.98 -24.02 16.14 -57.17 -0.92 -24.95 16 15 O -1.00 -23.61 15.91 -57.17 -0.91 -24.52 16 16 C -0.59 -12.15 5.97 -39.60 -0.24 -12.39 16 17 C -0.08 -1.46 9.50 -39.50 -0.38 -1.84 16 18 C 0.10 1.75 7.30 -39.43 -0.29 1.47 16 19 F -0.14 -2.24 17.27 2.25 0.04 -2.20 16 20 C -0.17 -2.73 10.01 -39.45 -0.39 -3.12 16 21 C 0.10 1.82 7.30 -39.43 -0.29 1.53 16 22 F -0.14 -2.29 17.27 2.25 0.04 -2.25 16 23 C -0.07 -1.30 9.50 -39.51 -0.38 -1.67 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.32 7.41 -51.93 -0.38 0.93 16 29 H 0.06 1.19 7.04 -51.93 -0.37 0.82 16 30 H 0.11 2.26 5.52 -51.93 -0.29 1.98 16 31 H 0.28 5.78 8.31 -40.82 -0.34 5.44 16 32 H 0.15 2.65 7.61 -52.49 -0.40 2.25 16 33 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.15 2.91 7.61 -52.49 -0.40 2.51 16 LS Contribution 312.55 15.07 4.71 4.71 Total: -1.00 -25.95 312.55 -7.70 -33.65 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.47 Total: 5.41 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -1.98 Total: -22.54 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.44 Total: -35.05 kcal Atomic # 8 Polarization: -47.63 SS G_CDS: -1.83 Total: -49.46 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.08 Total: -4.45 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.06 kcal Atomic # 16 Polarization: 56.27 SS G_CDS: -0.61 Total: 55.67 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -25.95 -7.70 -33.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128055607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.927 kcal (2) G-P(sol) polarization free energy of solvation -25.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds