Wall clock time and date at job start Tue Mar 31 2020 08:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47257 * 2 1 4 4 N 1.46497 * 109.46861 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00161 * 293.76001 * 4 3 2 6 6 H 1.08001 * 120.00116 * 149.38855 * 5 4 3 7 7 C 1.38809 * 120.00068 * 329.38789 * 5 4 3 8 8 N 1.31620 * 119.99899 * 337.58454 * 7 5 4 9 9 Si 1.86795 * 120.00110 * 157.58793 * 7 5 4 10 10 H 1.48500 * 109.47410 * 89.99765 * 9 7 5 11 11 H 1.48501 * 109.47203 * 210.00050 * 9 7 5 12 12 H 1.48505 * 109.47209 * 329.99461 * 9 7 5 13 13 S 1.65599 * 119.99621 * 113.75879 * 4 3 2 14 14 O 1.42102 * 106.40310 * 203.53883 * 13 4 3 15 15 O 1.42100 * 106.40416 * 336.46012 * 13 4 3 16 16 C 1.76206 * 107.21688 * 90.00135 * 13 4 3 17 17 C 1.38211 * 119.97196 * 269.72111 * 16 13 4 18 18 C 1.38474 * 120.01813 * 179.76666 * 17 16 13 19 19 F 1.35101 * 120.00762 * 180.27440 * 18 17 16 20 20 C 1.38410 * 119.97977 * 0.53066 * 18 17 16 21 21 C 1.38423 * 119.95161 * 359.72599 * 20 18 17 22 22 F 1.35095 * 120.01543 * 179.97438 * 21 20 18 23 23 C 1.38210 * 119.97688 * 89.99762 * 16 13 4 24 24 H 1.08991 * 109.47280 * 300.00344 * 1 2 3 25 25 H 1.09007 * 109.46612 * 60.00452 * 1 2 3 26 26 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46790 * 239.99680 * 2 1 3 28 28 H 1.09001 * 109.46298 * 119.99849 * 2 1 3 29 29 H 1.09004 * 109.46974 * 299.99875 * 3 2 1 30 30 H 1.09000 * 109.47062 * 59.99530 * 3 2 1 31 31 H 0.97000 * 119.99840 * 180.02562 * 8 7 5 32 32 H 1.08000 * 119.98821 * 0.02562 * 17 16 13 33 33 H 1.07998 * 120.02968 * 179.69819 * 20 18 17 34 34 H 1.08000 * 119.98080 * 359.97438 * 23 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 0.9647 1.0863 6 1 5.1565 0.5024 0.9546 7 6 3.6399 1.0746 2.3563 8 7 2.7223 1.9863 2.5997 9 14 4.2028 -0.0713 3.7199 10 1 5.3528 0.5378 4.4352 11 1 3.0864 -0.2911 4.6742 12 1 4.6166 -1.3718 3.1343 13 16 4.3336 2.0199 -1.3118 14 8 5.6165 1.4099 -1.2767 15 8 3.4523 1.9133 -2.4214 16 6 4.5944 3.7424 -1.0472 17 6 3.6627 4.6589 -1.4969 18 6 3.8643 6.0124 -1.2853 19 9 2.9507 6.9077 -1.7201 20 6 5.0046 6.4481 -0.6328 21 6 5.9396 5.5297 -0.1875 22 9 7.0533 5.9535 0.4490 23 6 5.7331 4.1763 -0.3952 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 2.3386 2.0633 3.4873 32 1 2.7751 4.3190 -2.0099 33 1 5.1650 7.5039 -0.4717 34 1 6.4624 3.4594 -0.0478 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128055607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:15 Heat of formation + Delta-G solvation = -154.610111 kcal Electronic energy + Delta-G solvation = -23608.212845 eV Core-core repulsion = 19689.672020 eV Total energy + Delta-G solvation = -3918.540825 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 305.068 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.15219 -50.13268 -39.73616 -38.18055 -37.75187 -36.34512 -34.29485 -32.86913 -32.25861 -31.46149 -27.75902 -25.57567 -24.68932 -24.01602 -22.16486 -20.48355 -19.83381 -18.71665 -18.30949 -18.26129 -17.61348 -17.13409 -16.90847 -16.81766 -16.56122 -16.44899 -16.05888 -15.51346 -15.45960 -15.16150 -14.41512 -13.98962 -13.65604 -13.53861 -13.32269 -13.23821 -13.20649 -13.17491 -12.87450 -12.62397 -12.61952 -12.28280 -12.18215 -12.08467 -11.77726 -11.64613 -11.29855 -11.15386 -10.46875 -9.91954 -9.75426 -8.40202 -6.02508 -0.51435 -0.19927 -0.07899 1.50815 1.55800 1.67246 1.99161 2.28144 2.60886 2.73134 2.87040 3.08371 3.22137 3.59311 3.66405 3.96136 3.97567 4.19730 4.29478 4.42377 4.54300 4.59536 4.71631 4.77511 4.81862 4.93424 5.08830 5.16021 5.28749 5.30198 5.43167 5.60157 5.69891 5.78536 6.39750 6.74678 7.23681 8.47899 Molecular weight = 305.07amu Principal moments of inertia in cm(-1) A = 0.013638 B = 0.006577 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.637927 B = 4256.276280 C = 4990.017366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.110 3.890 4 N -0.795 5.795 5 C -0.248 4.248 6 H 0.107 0.893 7 C 0.015 3.985 8 N -0.826 5.826 9 Si 0.978 3.022 10 H -0.270 1.270 11 H -0.268 1.268 12 H -0.260 1.260 13 S 2.503 3.497 14 O -1.009 7.009 15 O -1.017 7.017 16 C -0.610 4.610 17 C -0.087 4.087 18 C 0.106 3.894 19 F -0.127 7.127 20 C -0.148 4.148 21 C 0.104 3.896 22 F -0.129 7.129 23 C -0.083 4.083 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.286 0.714 32 H 0.152 0.848 33 H 0.182 0.818 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.850 3.814 0.679 4.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C -0.016 4.016 4 N -0.617 5.617 5 C -0.400 4.400 6 H 0.125 0.875 7 C -0.199 4.199 8 N -0.463 5.463 9 Si 0.800 3.200 10 H -0.195 1.195 11 H -0.192 1.192 12 H -0.184 1.184 13 S 2.607 3.393 14 O -0.999 6.999 15 O -1.006 7.006 16 C -0.688 4.688 17 C -0.107 4.107 18 C 0.086 3.914 19 F -0.106 7.106 20 C -0.168 4.168 21 C 0.084 3.916 22 F -0.108 7.108 23 C -0.103 4.103 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.170 0.830 33 H 0.200 0.800 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.660 3.705 -0.266 4.068 hybrid contribution 0.461 0.729 0.790 1.170 sum -1.199 4.434 0.524 4.622 Atomic orbital electron populations 1.21657 0.93902 1.02280 1.01921 1.21650 0.96581 0.96473 1.01353 1.21720 0.78416 0.98411 1.03054 1.54245 1.13058 1.59718 1.34634 1.20132 1.06482 1.27705 0.85678 0.87500 1.26469 0.96370 0.97108 0.99991 1.69940 1.24276 1.28310 1.23786 0.85140 0.78612 0.79043 0.77220 1.19512 1.19234 1.18386 1.13112 0.73512 0.74517 0.78194 1.93291 1.43013 1.75545 1.88009 1.93292 1.65343 1.86902 1.55102 1.32258 0.99651 1.30651 1.06251 1.21007 0.99884 0.91263 0.98551 1.17360 0.88446 0.86439 0.99188 1.91522 1.64799 1.66767 1.87507 1.21321 0.92804 1.02424 1.00235 1.17413 0.84802 0.92163 0.97211 1.91515 1.49462 1.90447 1.79331 1.20996 0.97299 0.95050 0.96912 0.92538 0.92437 0.91341 0.93512 0.92126 0.91975 0.88338 0.90347 0.83046 0.80034 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.91 71.98 0.71 -3.29 16 2 C -0.12 -4.42 5.98 30.60 0.18 -4.23 16 3 C 0.11 4.52 5.12 86.38 0.44 4.96 16 4 N -0.79 -36.07 2.98 -343.46 -1.02 -37.09 16 5 C -0.25 -11.40 8.67 84.03 0.73 -10.67 16 6 H 0.11 5.02 7.34 -2.91 -0.02 4.99 16 7 C 0.02 0.66 4.63 84.86 0.39 1.05 16 8 N -0.83 -36.09 11.06 21.65 0.24 -35.85 16 9 Si 0.98 34.29 29.61 68.60 2.03 36.33 16 10 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 11 H -0.27 -8.98 7.11 99.48 0.71 -8.27 16 12 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 13 S 2.50 115.81 5.63 -56.49 -0.32 115.49 16 14 O -1.01 -51.22 16.14 -128.00 -2.07 -53.29 16 15 O -1.02 -49.21 15.91 -128.00 -2.04 -51.24 16 16 C -0.61 -25.30 5.97 22.26 0.13 -25.17 16 17 C -0.09 -3.26 9.50 22.32 0.21 -3.05 16 18 C 0.11 3.45 7.30 22.37 0.16 3.61 16 19 F -0.13 -3.83 17.27 44.97 0.78 -3.06 16 20 C -0.15 -4.40 10.01 22.35 0.22 -4.18 16 21 C 0.10 3.52 7.30 22.37 0.16 3.68 16 22 F -0.13 -4.10 17.27 44.97 0.78 -3.32 16 23 C -0.08 -3.24 9.50 22.32 0.21 -3.02 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 2.29 7.41 -2.39 -0.02 2.27 16 29 H 0.06 2.48 7.04 -2.39 -0.02 2.46 16 30 H 0.10 4.22 5.52 -2.39 -0.01 4.21 16 31 H 0.29 11.53 8.31 -92.71 -0.77 10.76 16 32 H 0.15 5.43 7.61 -2.91 -0.02 5.41 16 33 H 0.18 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.15 5.76 7.61 -2.91 -0.02 5.74 16 Total: -1.00 -54.53 312.55 3.08 -51.45 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 1.14 Total: 20.90 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 3.57 Total: -40.31 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -0.78 Total: -72.95 kcal Atomic # 8 Polarization: -100.43 SS G_CDS: -4.10 Total: -104.53 kcal Atomic # 9 Polarization: -7.93 SS G_CDS: 1.55 Total: -6.38 kcal Atomic # 14 Polarization: 34.29 SS G_CDS: 2.03 Total: 36.33 kcal Atomic # 16 Polarization: 115.81 SS G_CDS: -0.32 Total: 115.49 kcal Total: -54.53 3.08 -51.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128055607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.160 kcal (2) G-P(sol) polarization free energy of solvation -54.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds