Wall clock time and date at job start Tue Mar 31 2020 08:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37981 * 120.06447 * 2 1 4 4 C 1.38320 * 120.16515 * 180.26432 * 3 2 1 5 5 C 1.38494 * 120.27885 * 359.78391 * 4 3 2 6 6 Cl 1.73596 * 119.94196 * 179.97438 * 5 4 3 7 7 C 1.38060 * 120.11771 * 359.97438 * 5 4 3 8 8 C 1.39565 * 120.05787 * 179.80092 * 2 1 3 9 9 C 1.47822 * 120.14046 * 359.97438 * 8 2 1 10 10 O 1.21573 * 120.00295 * 353.55979 * 9 8 2 11 11 N 1.34786 * 119.99853 * 173.56408 * 9 8 2 12 12 C 1.40521 * 119.99613 * 179.97438 * 11 9 8 13 13 C 1.40665 * 126.08663 * 359.96113 * 12 11 9 14 14 N 1.30914 * 108.38323 * 179.75210 * 13 12 11 15 15 N 1.40066 * 108.41303 * 0.44335 * 14 13 12 16 16 C 1.37317 * 126.06619 * 179.82068 * 15 14 13 17 17 H 1.08000 * 119.99997 * 174.02813 * 16 15 14 18 18 C 1.38984 * 119.99651 * 354.29759 * 16 15 14 19 19 N 1.31293 * 120.00392 * 5.53009 * 18 16 15 20 20 Si 1.86807 * 119.99809 * 185.52816 * 18 16 15 21 21 H 1.48493 * 109.47136 * 94.92093 * 20 18 16 22 22 H 1.48497 * 109.47226 * 214.92509 * 20 18 16 23 23 H 1.48505 * 109.46726 * 334.92699 * 20 18 16 24 24 C 1.35699 * 126.08249 * 180.02562 * 12 11 9 25 25 H 1.09008 * 109.47004 * 263.27884 * 1 2 3 26 26 H 1.09008 * 109.47315 * 23.26968 * 1 2 3 27 27 H 1.08994 * 109.47351 * 143.27477 * 1 2 3 28 28 H 1.08003 * 119.91766 * 0.02862 * 3 2 1 29 29 H 1.07996 * 119.85783 * 179.77317 * 4 3 2 30 30 H 1.07996 * 120.07814 * 180.02562 * 7 5 4 31 31 H 0.96991 * 119.99895 * 0.02562 * 11 9 8 32 32 H 1.07995 * 125.80556 * 0.03070 * 13 12 11 33 33 H 0.96997 * 119.99874 * 179.97438 * 19 18 16 34 34 H 1.07996 * 126.24703 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1942 0.0000 4 6 3.5814 1.1966 -0.0055 5 6 4.2818 0.0018 -0.0066 6 17 6.0177 0.0151 -0.0142 7 6 3.6019 -1.1997 -0.0016 8 6 2.2060 -1.2080 0.0042 9 6 1.4713 -2.4907 0.0092 10 8 0.2614 -2.4978 0.1278 11 7 2.1429 -3.6524 -0.1176 12 6 1.4445 -4.8718 -0.1123 13 6 0.0527 -5.0289 0.0176 14 7 -0.2244 -6.3075 -0.0274 15 7 0.9750 -7.0152 -0.1768 16 6 1.1035 -8.3798 -0.2604 17 1 2.0671 -8.8195 -0.4716 18 6 -0.0076 -9.1948 -0.0788 19 7 -1.1979 -8.6597 0.0645 20 14 0.1927 -11.0516 -0.0386 21 1 0.3164 -11.5058 1.3698 22 1 -0.9934 -11.6911 -0.6626 23 1 1.4146 -11.4341 -0.7910 24 6 1.9929 -6.1074 -0.2303 25 1 -0.3633 -0.1203 1.0207 26 1 -0.3634 0.9441 -0.4060 27 1 -0.3634 -0.8236 -0.6145 28 1 1.6579 2.1293 0.0005 29 1 4.1174 2.1342 -0.0092 30 1 4.1487 -2.1310 -0.0020 31 1 3.1082 -3.6468 -0.2118 32 1 -0.6655 -4.2302 0.1303 33 1 -1.9733 -9.2285 0.1909 34 1 3.0430 -6.3316 -0.3455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753065708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:46 Heat of formation + Delta-G solvation = 68.956975 kcal Electronic energy + Delta-G solvation = -21311.650911 eV Core-core repulsion = 17851.450162 eV Total energy + Delta-G solvation = -3460.200749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 305.067 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.45754 -39.46346 -38.06770 -36.65086 -34.50047 -33.32018 -32.36559 -31.50363 -30.21290 -27.92118 -26.84660 -25.02418 -23.84221 -21.93533 -21.11990 -20.32431 -19.42936 -17.88456 -17.29413 -16.05568 -15.85298 -15.49532 -15.20127 -15.00578 -14.80147 -14.04781 -13.76520 -13.71914 -13.44398 -13.12783 -12.94023 -12.82380 -12.32167 -11.93149 -11.70217 -11.54365 -11.39817 -11.34074 -11.28272 -11.18765 -10.92038 -10.53896 -10.19187 -9.28604 -9.20110 -9.09939 -8.83175 -8.72445 -8.08211 -6.72512 -6.58323 -4.24893 0.65265 0.95065 1.88050 2.79111 2.98825 3.04130 3.09614 3.48081 3.50436 3.80474 3.85673 4.42874 4.48224 4.52670 4.73294 4.82209 4.99115 4.99415 5.18662 5.31459 5.47075 5.66968 5.84095 5.87365 5.94234 6.14723 6.23246 6.39970 6.42831 6.61818 6.88274 6.93055 7.08952 7.21192 7.83572 8.11812 8.24244 8.58986 8.78762 9.35210 9.64157 10.37824 Molecular weight = 305.07amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.003045 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.053566 B = 9193.291636 C =10278.623660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.019 4.019 3 C -0.119 4.119 4 C -0.089 4.089 5 C -0.050 4.050 6 Cl -0.071 7.071 7 C -0.078 4.078 8 C -0.111 4.111 9 C 0.539 3.461 10 O -0.523 6.523 11 N -0.615 5.615 12 C -0.062 4.062 13 C -0.030 4.030 14 N -0.261 5.261 15 N -0.141 5.141 16 C -0.324 4.324 17 H 0.117 0.883 18 C 0.047 3.953 19 N -0.768 5.768 20 Si 0.935 3.065 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.082 4.082 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.396 0.604 32 H 0.177 0.823 33 H 0.275 0.725 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.964 16.079 -0.358 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.021 4.021 3 C -0.137 4.137 4 C -0.108 4.108 5 C -0.077 4.077 6 Cl -0.042 7.042 7 C -0.098 4.098 8 C -0.115 4.115 9 C 0.327 3.673 10 O -0.402 6.402 11 N -0.256 5.256 12 C -0.167 4.167 13 C -0.205 4.205 14 N -0.092 5.092 15 N 0.091 4.909 16 C -0.456 4.456 17 H 0.134 0.866 18 C -0.171 4.171 19 N -0.395 5.395 20 Si 0.759 3.241 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.233 4.233 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.120 0.880 28 H 0.155 0.845 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.230 0.770 32 H 0.194 0.806 33 H 0.086 0.914 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.079 15.094 -0.210 17.121 hybrid contribution 1.730 -0.158 -0.040 1.738 sum 9.810 14.936 -0.250 17.871 Atomic orbital electron populations 1.21129 0.89345 1.03222 1.04198 1.20193 0.97519 0.91191 0.93163 1.21023 0.93148 0.98001 1.01567 1.21179 0.94277 0.96892 0.98469 1.20728 0.84657 0.94917 1.07373 1.98374 1.09815 1.98942 1.97080 1.21216 0.93248 0.97329 0.97975 1.19882 0.92443 0.94192 1.04961 1.17867 0.87195 0.82860 0.79425 1.90629 1.13353 1.86186 1.50030 1.42429 1.09441 1.04105 1.69662 1.17248 0.92327 0.83492 1.23660 1.24127 0.93447 0.95381 1.07574 1.78258 1.03616 1.01940 1.25393 1.44555 1.02773 1.04906 1.38632 1.19896 0.97622 0.76877 1.51188 0.86566 1.25646 0.94525 1.01436 0.95450 1.70219 0.98423 1.36359 1.34485 0.85809 0.78800 0.80502 0.79027 1.19620 1.20084 1.18767 1.21266 0.94149 0.88337 1.19577 0.90244 0.92473 0.87986 0.84504 0.84710 0.84570 0.77027 0.80602 0.91436 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.71 36.00 0.31 -1.19 16 2 C -0.02 -0.24 5.91 -104.22 -0.62 -0.85 16 3 C -0.12 -1.14 9.66 -39.65 -0.38 -1.52 16 4 C -0.09 -0.82 9.82 -39.46 -0.39 -1.21 16 5 C -0.05 -0.53 6.31 -39.55 -0.25 -0.78 16 6 Cl -0.07 -0.68 28.95 -51.86 -1.50 -2.18 16 7 C -0.08 -0.91 9.30 -39.14 -0.36 -1.27 16 8 C -0.11 -1.53 5.87 -104.98 -0.62 -2.14 16 9 C 0.54 9.44 7.67 -12.34 -0.09 9.34 16 10 O -0.52 -10.58 10.50 5.30 0.06 -10.52 16 11 N -0.61 -10.96 5.41 -10.86 -0.06 -11.01 16 12 C -0.06 -1.41 6.90 -83.86 -0.58 -1.99 16 13 C -0.03 -0.77 10.85 -17.03 -0.18 -0.96 16 14 N -0.26 -7.53 10.42 30.80 0.32 -7.21 16 15 N -0.14 -3.85 3.74 -11.41 -0.04 -3.90 16 16 C -0.32 -8.51 10.24 -14.82 -0.15 -8.67 16 17 H 0.12 2.73 7.84 -52.49 -0.41 2.32 16 18 C 0.05 1.20 5.50 -17.51 -0.10 1.11 16 19 N -0.77 -21.34 11.84 55.49 0.66 -20.68 16 20 Si 0.93 18.81 29.56 -169.99 -5.02 13.78 16 21 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 24 C -0.08 -1.92 11.49 -16.38 -0.19 -2.11 16 25 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 26 H 0.06 0.54 8.04 -51.92 -0.42 0.12 16 27 H 0.10 1.52 5.89 -51.93 -0.31 1.22 16 28 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 29 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.14 1.38 6.45 -52.49 -0.34 1.04 16 31 H 0.40 5.57 6.90 -40.82 -0.28 5.29 16 32 H 0.18 4.47 5.91 -52.49 -0.31 4.16 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.15 2.83 8.06 -52.49 -0.42 2.40 16 LS Contribution 311.62 15.07 4.70 4.70 Total: -1.00 -31.85 311.62 -7.39 -39.24 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -2.89 Total: 10.03 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -3.60 Total: -12.24 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.88 Total: -42.80 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.06 Total: -10.52 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.78 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.85 -7.39 -39.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753065708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.197 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds