Wall clock time and date at job start Tue Mar 31 2020 08:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37981 * 120.06447 * 2 1 4 4 C 1.38320 * 120.16515 * 180.26432 * 3 2 1 5 5 C 1.38494 * 120.27885 * 359.78391 * 4 3 2 6 6 Cl 1.73596 * 119.94196 * 179.97438 * 5 4 3 7 7 C 1.38060 * 120.11771 * 359.97438 * 5 4 3 8 8 C 1.39565 * 120.05787 * 179.80092 * 2 1 3 9 9 C 1.47822 * 120.14046 * 359.97438 * 8 2 1 10 10 O 1.21573 * 120.00295 * 353.55979 * 9 8 2 11 11 N 1.34786 * 119.99853 * 173.56408 * 9 8 2 12 12 C 1.40521 * 119.99613 * 179.97438 * 11 9 8 13 13 C 1.40665 * 126.08663 * 359.96113 * 12 11 9 14 14 N 1.30914 * 108.38323 * 179.75210 * 13 12 11 15 15 N 1.40066 * 108.41303 * 0.44335 * 14 13 12 16 16 C 1.37317 * 126.06619 * 179.82068 * 15 14 13 17 17 H 1.08000 * 119.99997 * 174.02813 * 16 15 14 18 18 C 1.38984 * 119.99651 * 354.29759 * 16 15 14 19 19 N 1.31293 * 120.00392 * 5.53009 * 18 16 15 20 20 Si 1.86807 * 119.99809 * 185.52816 * 18 16 15 21 21 H 1.48493 * 109.47136 * 94.92093 * 20 18 16 22 22 H 1.48497 * 109.47226 * 214.92509 * 20 18 16 23 23 H 1.48505 * 109.46726 * 334.92699 * 20 18 16 24 24 C 1.35699 * 126.08249 * 180.02562 * 12 11 9 25 25 H 1.09008 * 109.47004 * 263.27884 * 1 2 3 26 26 H 1.09008 * 109.47315 * 23.26968 * 1 2 3 27 27 H 1.08994 * 109.47351 * 143.27477 * 1 2 3 28 28 H 1.08003 * 119.91766 * 0.02862 * 3 2 1 29 29 H 1.07996 * 119.85783 * 179.77317 * 4 3 2 30 30 H 1.07996 * 120.07814 * 180.02562 * 7 5 4 31 31 H 0.96991 * 119.99895 * 0.02562 * 11 9 8 32 32 H 1.07995 * 125.80556 * 0.03070 * 13 12 11 33 33 H 0.96997 * 119.99874 * 179.97438 * 19 18 16 34 34 H 1.07996 * 126.24703 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1942 0.0000 4 6 3.5814 1.1966 -0.0055 5 6 4.2818 0.0018 -0.0066 6 17 6.0177 0.0151 -0.0142 7 6 3.6019 -1.1997 -0.0016 8 6 2.2060 -1.2080 0.0042 9 6 1.4713 -2.4907 0.0092 10 8 0.2614 -2.4978 0.1278 11 7 2.1429 -3.6524 -0.1176 12 6 1.4445 -4.8718 -0.1123 13 6 0.0527 -5.0289 0.0176 14 7 -0.2244 -6.3075 -0.0274 15 7 0.9750 -7.0152 -0.1768 16 6 1.1035 -8.3798 -0.2604 17 1 2.0671 -8.8195 -0.4716 18 6 -0.0076 -9.1948 -0.0788 19 7 -1.1979 -8.6597 0.0645 20 14 0.1927 -11.0516 -0.0386 21 1 0.3164 -11.5058 1.3698 22 1 -0.9934 -11.6911 -0.6626 23 1 1.4146 -11.4341 -0.7910 24 6 1.9929 -6.1074 -0.2303 25 1 -0.3633 -0.1203 1.0207 26 1 -0.3634 0.9441 -0.4060 27 1 -0.3634 -0.8236 -0.6145 28 1 1.6579 2.1293 0.0005 29 1 4.1174 2.1342 -0.0092 30 1 4.1487 -2.1310 -0.0020 31 1 3.1082 -3.6468 -0.2118 32 1 -0.6655 -4.2302 0.1303 33 1 -1.9733 -9.2285 0.1909 34 1 3.0430 -6.3316 -0.3455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753065708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:45 Heat of formation + Delta-G solvation = 49.437204 kcal Electronic energy + Delta-G solvation = -21312.497352 eV Core-core repulsion = 17851.450162 eV Total energy + Delta-G solvation = -3461.047189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 305.067 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.89414 -40.99660 -39.33297 -37.46725 -36.09030 -35.10606 -33.32537 -32.64016 -32.07002 -29.61475 -27.92259 -26.81769 -24.96015 -23.03126 -22.84201 -21.68094 -21.20236 -19.42745 -18.72018 -17.43836 -17.21412 -16.87542 -16.37504 -16.35656 -16.05719 -15.64930 -15.24817 -14.87823 -14.68801 -14.53590 -14.47241 -13.77744 -13.50514 -13.41556 -13.14582 -12.98664 -12.88654 -12.67176 -12.41939 -12.17845 -12.06700 -11.96694 -11.84112 -11.03390 -10.82751 -10.51281 -10.16624 -10.09123 -9.60558 -8.53720 -8.47727 -6.24683 -0.29285 0.10984 1.07919 1.25523 1.40112 1.58269 1.60308 1.88133 2.01499 2.25682 2.40723 2.76678 2.89554 3.08018 3.61566 3.69694 3.87111 4.09376 4.24951 4.42439 4.44829 4.56941 4.67440 4.79906 4.86068 4.97525 5.00307 5.08000 5.12617 5.23587 5.30101 5.44148 5.54364 5.72445 5.95253 6.30386 6.67390 6.73050 7.31047 7.45419 7.66967 8.51814 Molecular weight = 305.07amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.003045 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.053566 B = 9193.291636 C =10278.623660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.031 4.031 3 C -0.109 4.109 4 C -0.074 4.074 5 C -0.056 4.056 6 Cl -0.061 7.061 7 C -0.077 4.077 8 C -0.134 4.134 9 C 0.538 3.462 10 O -0.556 6.556 11 N -0.612 5.612 12 C -0.046 4.046 13 C -0.055 4.055 14 N -0.310 5.310 15 N -0.167 5.167 16 C -0.355 4.355 17 H 0.141 0.859 18 C -0.006 4.006 19 N -0.823 5.823 20 Si 1.019 2.981 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.243 1.243 24 C -0.080 4.080 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.171 0.829 29 H 0.167 0.833 30 H 0.147 0.853 31 H 0.415 0.585 32 H 0.171 0.829 33 H 0.277 0.723 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.862 17.576 -0.545 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.032 4.032 3 C -0.127 4.127 4 C -0.093 4.093 5 C -0.082 4.082 6 Cl -0.032 7.032 7 C -0.097 4.097 8 C -0.137 4.137 9 C 0.328 3.672 10 O -0.436 6.436 11 N -0.256 5.256 12 C -0.152 4.152 13 C -0.231 4.231 14 N -0.142 5.142 15 N 0.064 4.936 16 C -0.486 4.486 17 H 0.158 0.842 18 C -0.217 4.217 19 N -0.451 5.451 20 Si 0.838 3.162 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.166 1.166 24 C -0.230 4.230 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.188 0.812 29 H 0.184 0.816 30 H 0.164 0.836 31 H 0.253 0.747 32 H 0.188 0.812 33 H 0.086 0.914 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 11.034 16.635 -0.404 19.966 hybrid contribution 0.932 -0.342 0.013 0.993 sum 11.966 16.293 -0.392 20.219 Atomic orbital electron populations 1.21027 0.89921 1.03488 1.03124 1.20348 0.97402 0.91839 0.93630 1.21336 0.93431 0.98029 0.99899 1.21595 0.94218 0.97678 0.95816 1.20849 0.85300 0.94963 1.07129 1.98384 1.08882 1.98918 1.97012 1.21273 0.92312 0.98570 0.97522 1.19575 0.93254 0.92451 1.08434 1.18588 0.87076 0.83914 0.77625 1.90625 1.15129 1.86860 1.50975 1.42368 1.10303 1.02648 1.70316 1.17315 0.91369 0.85388 1.21156 1.24198 0.95223 0.94748 1.08883 1.78146 1.05728 1.03201 1.27138 1.44837 1.02996 1.05748 1.40025 1.20631 0.99067 0.77007 1.51918 0.84198 1.26879 0.93712 1.07029 0.94121 1.70397 0.99615 1.38571 1.36543 0.84574 0.79310 0.73080 0.79212 1.19180 1.20124 1.16573 1.21984 0.95437 0.87809 1.17788 0.91213 0.89398 0.91307 0.81155 0.81560 0.83584 0.74729 0.81218 0.91367 0.79580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 8.71 71.23 0.62 -2.27 16 2 C -0.03 -0.71 5.91 -19.61 -0.12 -0.83 16 3 C -0.11 -1.68 9.66 22.23 0.21 -1.46 16 4 C -0.07 -1.06 9.82 22.35 0.22 -0.84 16 5 C -0.06 -0.99 6.31 22.29 0.14 -0.85 16 6 Cl -0.06 -0.99 28.95 -2.72 -0.08 -1.06 16 7 C -0.08 -1.64 9.30 22.56 0.21 -1.43 16 8 C -0.13 -3.56 5.87 -20.09 -0.12 -3.67 16 9 C 0.54 19.16 7.67 86.78 0.67 19.83 16 10 O -0.56 -23.60 10.50 -3.95 -0.04 -23.64 16 11 N -0.61 -21.75 5.41 -306.53 -1.66 -23.41 16 12 C -0.05 -2.14 6.90 37.75 0.26 -1.88 16 13 C -0.06 -3.02 10.85 85.42 0.93 -2.09 16 14 N -0.31 -18.81 10.42 -56.46 -0.59 -19.40 16 15 N -0.17 -9.35 3.74 -190.01 -0.71 -10.06 16 16 C -0.36 -18.90 10.24 84.01 0.86 -18.04 16 17 H 0.14 6.45 7.84 -2.91 -0.02 6.43 16 18 C -0.01 -0.29 5.50 84.95 0.47 0.17 16 19 N -0.82 -47.70 11.84 21.66 0.26 -47.44 16 20 Si 1.02 38.68 29.56 68.60 2.03 40.71 16 21 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 22 H -0.28 -10.35 7.11 99.48 0.71 -9.65 16 23 H -0.24 -8.29 7.11 99.48 0.71 -7.59 16 24 C -0.08 -3.72 11.49 83.38 0.96 -2.76 16 25 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.09 1.51 8.04 -2.38 -0.02 1.49 16 27 H 0.07 2.15 5.89 -2.39 -0.01 2.14 16 28 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 29 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 30 H 0.15 2.66 6.45 -2.91 -0.02 2.64 16 31 H 0.42 11.17 6.90 -92.72 -0.64 10.53 16 32 H 0.17 9.28 5.91 -2.91 -0.02 9.26 16 33 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 34 H 0.19 6.85 8.06 -2.91 -0.02 6.82 16 Total: -1.00 -74.03 311.62 5.05 -68.99 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.53 Total: 31.43 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 5.31 Total: -16.13 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -2.70 Total: -100.30 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.04 Total: -23.64 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.06 kcal Total: -74.03 5.05 -68.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753065708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.425 kcal (2) G-P(sol) polarization free energy of solvation -74.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds