Wall clock time and date at job start Tue Mar 31 2020 09:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46509 * 120.00153 * 2 1 4 4 C 1.50703 * 109.47064 * 275.00130 * 3 2 1 5 5 H 1.08003 * 119.99660 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99903 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99860 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99832 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47322 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46969 * 119.99975 * 8 6 4 11 11 H 1.48496 * 109.46780 * 239.99896 * 8 6 4 12 12 S 1.65604 * 120.00175 * 180.02562 * 2 1 3 13 13 O 1.42102 * 104.27387 * 333.93132 * 12 2 1 14 14 O 1.42098 * 104.27697 * 206.07067 * 12 2 1 15 15 C 1.81401 * 104.44870 * 89.99744 * 12 2 1 16 16 C 1.50693 * 109.47323 * 180.02562 * 15 12 2 17 17 C 1.38238 * 119.98747 * 270.23482 * 16 15 12 18 18 C 1.38182 * 120.04926 * 180.23109 * 17 16 15 19 19 C 1.38497 * 120.02770 * 359.78734 * 18 17 16 20 20 F 1.35103 * 120.01374 * 180.02562 * 19 18 17 21 21 C 1.38397 * 119.97392 * 359.97438 * 19 18 17 22 22 C 1.38438 * 119.94948 * 0.02562 * 21 19 18 23 23 F 1.35104 * 120.01364 * 179.97438 * 22 21 19 24 24 H 1.09004 * 109.46928 * 269.99925 * 1 2 3 25 25 H 1.08998 * 109.47266 * 29.99633 * 1 2 3 26 26 H 1.08994 * 109.47378 * 150.00001 * 1 2 3 27 27 H 1.08995 * 109.46716 * 35.00382 * 3 2 1 28 28 H 1.08997 * 109.46991 * 154.99851 * 3 2 1 29 29 H 0.97001 * 119.99834 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47031 * 60.00240 * 15 12 2 31 31 H 1.08999 * 109.47420 * 300.00452 * 15 12 2 32 32 H 1.08004 * 119.97328 * 359.97167 * 17 16 15 33 33 H 1.08004 * 119.98465 * 179.76793 * 18 17 16 34 34 H 1.07995 * 120.02726 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9288 1.1935 -2.2332 6 6 2.9997 2.9509 -1.6664 7 7 3.5016 3.6479 -0.6704 8 14 3.1775 3.5673 -3.4207 9 1 2.5301 2.6073 -4.3507 10 1 2.5258 4.8957 -3.5471 11 1 4.6183 3.6885 -3.7592 12 16 2.2930 -1.4341 -0.0006 13 8 1.3969 -2.3564 0.6041 14 8 3.5394 -1.1194 0.6047 15 6 2.5192 -1.8254 -1.7574 16 6 3.2693 -3.1256 -1.8900 17 6 4.6506 -3.1239 -1.9456 18 6 5.3394 -4.3151 -2.0719 19 6 4.6468 -5.5126 -2.1386 20 9 5.3206 -6.6771 -2.2616 21 6 3.2642 -5.5159 -2.0781 22 6 2.5750 -4.3219 -1.9516 23 9 1.2253 -4.3236 -1.8929 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6502 2.0043 0.5895 28 1 3.1857 1.1177 0.4343 29 1 3.9651 4.4816 -0.8470 30 1 3.0865 -1.0278 -2.2372 31 1 1.5450 -1.9177 -2.2376 32 1 5.1915 -2.1905 -1.8944 33 1 6.4184 -4.3123 -2.1190 34 1 2.7232 -6.4492 -2.1297 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189780607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:31 Heat of formation + Delta-G solvation = -135.247411 kcal Electronic energy + Delta-G solvation = -23152.794816 eV Core-core repulsion = 19235.093621 eV Total energy + Delta-G solvation = -3917.701195 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 305.068 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.22170 -49.12282 -39.15053 -36.61679 -35.65662 -35.32246 -32.92694 -32.56725 -31.02292 -27.85687 -27.17354 -25.14296 -23.43468 -22.54281 -21.94613 -18.45663 -18.26948 -17.46002 -17.03581 -16.81582 -16.31584 -16.11502 -15.86534 -15.60934 -15.49413 -15.14849 -14.66323 -14.54393 -14.06351 -13.57924 -13.35797 -13.20136 -12.45991 -12.41082 -12.34452 -12.23353 -12.05640 -11.77310 -11.62482 -11.52231 -11.22614 -11.17457 -10.90728 -10.74806 -10.55164 -10.14329 -9.85999 -9.28340 -8.78653 -8.58652 -8.05409 -6.19961 -4.28682 0.41837 0.78142 1.00921 3.12035 3.17941 3.22691 3.27329 3.30233 3.63293 4.09510 4.16607 4.28481 4.31873 4.45445 4.57348 4.69186 4.95097 5.13431 5.27153 5.47388 5.53601 5.55418 5.67310 5.82161 5.85140 5.99157 6.05704 6.23755 6.49480 6.51679 7.27079 7.33804 7.55147 7.76048 8.04482 8.76485 9.38592 10.87700 Molecular weight = 305.07amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.004915 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.939608 B = 5695.040246 C = 6466.319782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.986 5.986 3 C 0.240 3.760 4 C -0.551 4.551 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.281 1.281 12 S 2.610 3.390 13 O -0.967 6.967 14 O -0.947 6.947 15 C -0.596 4.596 16 C -0.125 4.125 17 C -0.048 4.048 18 C -0.160 4.160 19 C 0.130 3.870 20 F -0.131 7.131 21 C -0.192 4.192 22 C 0.140 3.860 23 F -0.120 7.120 24 H 0.048 0.952 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.265 0.735 30 H 0.160 0.840 31 H 0.139 0.861 32 H 0.157 0.843 33 H 0.149 0.851 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 -14.117 -4.109 14.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.826 5.826 3 C 0.118 3.882 4 C -0.590 4.590 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.720 3.280 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.207 1.207 12 S 2.700 3.300 13 O -0.957 6.957 14 O -0.937 6.937 15 C -0.721 4.721 16 C -0.128 4.128 17 C -0.066 4.066 18 C -0.178 4.178 19 C 0.110 3.890 20 F -0.109 7.109 21 C -0.211 4.211 22 C 0.119 3.881 23 F -0.098 7.098 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.178 0.822 31 H 0.157 0.843 32 H 0.175 0.825 33 H 0.167 0.833 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.111 -14.424 -3.306 14.798 hybrid contribution -0.191 0.494 -1.858 1.932 sum -0.080 -13.930 -5.165 14.857 Atomic orbital electron populations 1.21287 0.79801 1.02166 1.01098 1.57340 1.14193 1.22722 1.88326 1.19312 0.92651 0.78775 0.97492 1.21623 1.37100 1.07332 0.92972 0.91923 1.24961 0.95026 0.96424 0.97328 1.69942 1.36374 1.15070 1.30911 0.86529 0.78022 0.78979 0.84434 1.19671 1.20762 1.20736 1.05065 0.74430 0.73536 0.76936 1.93543 1.64893 1.64115 1.73134 1.93568 1.44476 1.83011 1.72628 1.29866 1.09371 1.02105 1.30735 1.19292 0.94530 0.92212 1.06762 1.21079 0.92079 0.99321 0.94164 1.21243 1.01727 0.90625 1.04253 1.17330 0.89192 0.81771 1.00717 1.91533 1.80014 1.46311 1.93084 1.20989 0.93388 0.98816 1.07946 1.17170 0.77548 0.93069 1.00277 1.91565 1.27921 1.97175 1.93131 0.93351 0.90649 0.92682 0.94019 0.92599 0.92465 0.82206 0.84304 0.82497 0.83314 0.82986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.73 10.22 59.84 0.61 2.34 16 2 N -0.99 -19.90 3.10 -123.06 -0.38 -20.28 16 3 C 0.24 5.78 5.39 -5.19 -0.03 5.75 16 4 C -0.55 -13.83 9.38 -34.44 -0.32 -14.16 16 5 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 6 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 8 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 16 9 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 S 2.61 49.98 5.36 -107.50 -0.58 49.41 16 13 O -0.97 -19.52 17.09 -57.54 -0.98 -20.50 16 14 O -0.95 -20.80 16.53 -57.54 -0.95 -21.75 16 15 C -0.60 -9.24 6.13 36.00 0.22 -9.02 16 16 C -0.13 -1.81 5.15 -104.55 -0.54 -2.34 16 17 C -0.05 -0.60 9.70 -39.60 -0.38 -0.98 16 18 C -0.16 -1.74 10.02 -39.51 -0.40 -2.14 16 19 C 0.13 1.47 7.30 -39.43 -0.29 1.19 16 20 F -0.13 -1.45 17.27 2.25 0.04 -1.41 16 21 C -0.19 -2.25 10.01 -39.45 -0.39 -2.64 16 22 C 0.14 1.94 7.24 -39.43 -0.29 1.65 16 23 F -0.12 -1.75 16.47 2.25 0.04 -1.71 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 26 H 0.05 0.80 7.79 -51.93 -0.40 0.39 16 27 H 0.04 1.05 8.11 -51.93 -0.42 0.63 16 28 H 0.06 1.47 6.82 -51.93 -0.35 1.11 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.16 2.41 8.09 -51.92 -0.42 1.99 16 31 H 0.14 1.91 7.64 -51.92 -0.40 1.52 16 32 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 33 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 320.90 15.07 4.84 4.84 Total: -1.00 -30.82 320.90 -7.82 -38.64 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -3.65 Total: 0.45 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -1.90 Total: -18.71 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.35 Total: -44.07 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.93 Total: -42.25 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.08 Total: -3.12 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 49.98 SS G_CDS: -0.58 Total: 49.41 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.82 -7.82 -38.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189780607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.609 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds