Wall clock time and date at job start Tue Mar 31 2020 09:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86800 * 120.00246 * 2 1 4 4 H 1.48499 * 109.46954 * 85.49347 * 3 2 1 5 5 H 1.48498 * 109.47137 * 205.49706 * 3 2 1 6 6 H 1.48506 * 109.46604 * 325.49750 * 3 2 1 7 7 C 1.40033 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99942 * 38.19174 * 7 2 1 9 9 C 1.41537 * 120.00413 * 218.19291 * 7 2 1 10 10 C 1.41184 * 120.99556 * 16.50345 * 9 7 2 11 11 C 1.37589 * 119.01529 * 180.02562 * 10 9 7 12 12 N 1.32080 * 121.11053 * 0.02562 * 11 10 9 13 13 C 1.32471 * 122.23328 * 0.02562 * 12 11 10 14 14 N 1.39470 * 119.58004 * 180.02562 * 13 12 11 15 15 C 1.34774 * 119.99879 * 5.97604 * 14 13 12 16 16 O 1.21272 * 120.00218 * 5.34498 * 15 14 13 17 17 C 1.50704 * 119.99851 * 185.34912 * 15 14 13 18 18 H 1.09005 * 110.85372 * 307.34344 * 17 15 14 19 19 C 1.54733 * 110.97616 * 71.18650 * 17 15 14 20 20 C 1.51686 * 102.54817 * 142.33278 * 19 17 15 21 21 C 1.47481 * 125.86390 * 164.57280 * 20 19 17 22 22 O 1.21469 * 119.99989 * 0.02562 * 21 20 19 23 23 O 1.34749 * 119.99820 * 180.02562 * 21 20 19 24 24 N 1.29054 * 108.27515 * 344.61172 * 20 19 17 25 25 O 1.41398 * 112.87555 * 359.68127 * 24 20 19 26 26 C 1.38602 * 120.83725 * 359.70854 * 13 12 11 27 27 H 0.97009 * 120.00081 * 185.08078 * 1 2 3 28 28 H 1.07999 * 120.48555 * 0.02883 * 10 9 7 29 29 H 1.07998 * 119.43937 * 180.02562 * 11 10 9 30 30 H 0.97001 * 119.99887 * 185.97880 * 14 13 12 31 31 H 1.08998 * 110.79358 * 260.59757 * 19 17 15 32 32 H 1.09000 * 110.79032 * 24.06851 * 19 17 15 33 33 H 0.96703 * 116.99752 * 180.02562 * 23 21 20 34 34 H 1.08004 * 120.59859 * 180.31466 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3937 2.1013 1.3958 5 1 3.5833 1.4145 -0.6027 6 1 1.4896 2.6233 -0.7931 7 6 2.0076 -1.2127 0.0005 8 1 1.6409 -2.0482 -0.5774 9 6 3.1957 -1.3436 0.7585 10 6 3.5144 -0.4186 1.7763 11 6 4.6805 -0.5845 2.4876 12 7 5.4987 -1.5894 2.2321 13 6 5.2464 -2.4833 1.2875 14 7 6.1490 -3.5230 1.0649 15 6 7.2065 -3.6845 1.8846 16 8 7.3212 -2.9880 2.8708 17 6 8.2464 -4.7305 1.5758 18 1 7.7828 -5.7049 1.4211 19 6 9.0977 -4.3205 0.3504 20 6 10.4832 -4.8032 0.7353 21 6 11.6274 -4.9648 -0.1812 22 8 11.5030 -4.7011 -1.3604 23 8 12.8107 -5.4049 0.2896 24 7 10.4888 -5.0489 2.0022 25 8 9.2418 -4.7921 2.6174 26 6 4.0937 -2.4022 0.5222 27 1 -0.4851 -0.8368 0.0744 28 1 2.8527 0.4068 1.9934 29 1 4.9308 0.1188 3.2680 30 1 6.0156 -4.1298 0.3200 31 1 8.7482 -4.8256 -0.5500 32 1 9.0879 -3.2387 0.2171 33 1 13.5314 -5.4945 -0.3490 34 1 3.8894 -3.1360 -0.2434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480052.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:57 Heat of formation + Delta-G solvation = -53.817658 kcal Electronic energy + Delta-G solvation = -23523.259830 eV Core-core repulsion = 19617.026009 eV Total energy + Delta-G solvation = -3906.233821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.089 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.34904 -40.40006 -39.40683 -37.87673 -36.76397 -34.77252 -33.96516 -33.61169 -31.63888 -31.17346 -28.85549 -25.88600 -25.77535 -25.04987 -22.17143 -21.86161 -20.92390 -19.97771 -18.80085 -18.60548 -17.86277 -17.83124 -16.41963 -16.28560 -16.20175 -15.70085 -15.18484 -14.75556 -14.55463 -14.49652 -13.88102 -13.78168 -13.62345 -13.25575 -13.05230 -12.85957 -12.56202 -12.25437 -12.14336 -11.86653 -11.66340 -11.47858 -11.23818 -10.95311 -10.45578 -10.39260 -10.03195 -9.80111 -9.59640 -9.24649 -8.39838 -7.99210 -7.63141 -7.35838 -4.85969 0.20760 1.71502 2.12728 2.17817 2.40179 2.62772 2.95723 3.12149 3.24298 3.29642 3.42740 3.72654 3.86720 3.92257 4.19465 4.33550 4.39117 4.62279 4.80804 5.11341 5.14861 5.35816 5.69987 5.71950 6.24211 6.29630 6.43443 6.46052 6.57433 7.06333 7.11231 7.17856 7.26363 7.43808 7.47855 7.84272 8.11834 8.27349 8.45489 8.50289 9.41827 9.61922 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.002900 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.401224 B = 9652.385856 C = 9978.914948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.059 3.941 3 Si 1.064 2.936 4 H -0.269 1.269 5 H -0.265 1.265 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.083 0.917 9 C 0.129 3.871 10 C -0.311 4.311 11 C 0.142 3.858 12 N -0.570 5.570 13 C 0.361 3.639 14 N -0.654 5.654 15 C 0.505 3.495 16 O -0.446 6.446 17 C 0.024 3.976 18 H 0.122 0.878 19 C -0.120 4.120 20 C 0.053 3.947 21 C 0.567 3.433 22 O -0.483 6.483 23 O -0.494 6.494 24 N -0.201 5.201 25 O -0.141 6.141 26 C -0.306 4.306 27 H 0.294 0.706 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.409 0.591 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.424 0.576 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.785 -9.256 -3.695 18.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.168 4.168 3 Si 0.888 3.112 4 H -0.195 1.195 5 H -0.189 1.189 6 H -0.210 1.210 7 C -0.539 4.539 8 H 0.101 0.899 9 C 0.121 3.879 10 C -0.334 4.334 11 C -0.010 4.010 12 N -0.290 5.290 13 C 0.137 3.863 14 N -0.301 5.301 15 C 0.286 3.714 16 O -0.312 6.312 17 C -0.038 4.038 18 H 0.139 0.861 19 C -0.159 4.159 20 C -0.139 4.139 21 C 0.406 3.594 22 O -0.367 6.367 23 O -0.305 6.305 24 N 0.057 4.943 25 O -0.165 6.165 26 C -0.332 4.332 27 H 0.106 0.894 28 H 0.128 0.872 29 H 0.146 0.854 30 H 0.244 0.756 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.284 0.716 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 16.658 -7.474 -1.573 18.326 hybrid contribution -0.988 -1.946 -1.940 2.920 sum 15.670 -9.420 -3.513 18.618 Atomic orbital electron populations 1.70536 1.08949 1.33610 1.26100 1.27404 0.95077 1.05026 0.89267 0.83782 0.76212 0.72953 0.78296 1.19519 1.18886 1.21001 1.20585 1.06274 1.00478 1.26566 0.89911 1.17538 0.90548 0.89696 0.90146 1.21918 1.01971 1.05560 1.03972 1.21790 0.89949 0.93068 0.96207 1.67227 1.34486 1.06385 1.20936 1.17951 0.87400 0.87793 0.93171 1.43286 1.24740 1.30898 1.31225 1.19793 0.82340 0.84648 0.84647 1.90874 1.73695 1.42411 1.24239 1.23793 0.91710 1.01016 0.87329 0.86069 1.22805 0.86895 1.05872 1.00321 1.24655 0.95626 1.00487 0.93163 1.19096 0.81477 0.73857 0.84932 1.91000 1.83622 1.45626 1.16423 1.84639 1.21185 1.78143 1.46574 1.78608 1.03116 1.04451 1.08145 1.91471 1.10088 1.89930 1.25014 1.21004 0.97090 1.06963 1.08160 0.89409 0.87152 0.85357 0.75556 0.85658 0.86169 0.71581 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.01 13.65 55.55 0.76 -18.25 16 2 C 0.06 1.44 5.16 -17.35 -0.09 1.35 16 3 Si 1.06 22.44 25.76 -169.99 -4.38 18.06 16 4 H -0.27 -5.45 6.44 56.52 0.36 -5.08 16 5 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.51 -12.80 9.33 -37.65 -0.35 -13.15 16 8 H 0.08 2.11 8.06 -52.49 -0.42 1.68 16 9 C 0.13 3.16 5.32 -106.55 -0.57 2.59 16 10 C -0.31 -7.41 7.87 -38.70 -0.30 -7.71 16 11 C 0.14 3.28 11.15 -17.68 -0.20 3.08 16 12 N -0.57 -13.59 7.90 -12.52 -0.10 -13.69 16 13 C 0.36 7.79 7.40 -154.70 -1.14 6.64 16 14 N -0.65 -10.55 5.39 -11.49 -0.06 -10.61 16 15 C 0.51 8.32 7.08 -10.98 -0.08 8.24 16 16 O -0.45 -9.71 14.89 -13.27 -0.20 -9.90 16 17 C 0.02 0.28 4.23 -26.97 -0.11 0.17 16 18 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 19 C -0.12 -1.12 6.44 -26.48 -0.17 -1.29 16 20 C 0.05 0.55 7.30 -79.51 -0.58 -0.04 16 21 C 0.57 5.00 8.34 34.50 0.29 5.28 16 22 O -0.48 -5.09 17.74 -19.24 -0.34 -5.43 16 23 O -0.49 -3.15 13.43 -40.63 -0.55 -3.70 16 24 N -0.20 -2.53 12.51 35.26 0.44 -2.09 16 25 O -0.14 -2.06 11.83 -30.21 -0.36 -2.41 16 26 C -0.31 -6.83 9.73 -38.48 -0.37 -7.20 16 27 H 0.29 7.01 8.73 -40.82 -0.36 6.65 16 28 H 0.11 2.56 4.64 -52.49 -0.24 2.31 16 29 H 0.13 2.60 8.06 -52.49 -0.42 2.18 16 30 H 0.41 4.69 8.70 -40.82 -0.36 4.34 16 31 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.12 1.23 7.90 -51.93 -0.41 0.82 16 33 H 0.42 0.42 9.11 45.56 0.42 0.83 16 34 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 312.63 15.07 4.71 4.71 Total: -1.00 -33.96 312.63 -5.65 -39.61 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -1.90 Total: 5.74 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -3.68 Total: -2.04 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 1.04 Total: -44.64 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -1.44 Total: -21.45 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.38 Total: 18.06 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.96 -5.65 -39.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480052.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.204 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds