Wall clock time and date at job start Tue Mar 31 2020 09:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86800 * 120.00246 * 2 1 4 4 H 1.48499 * 109.46954 * 85.49347 * 3 2 1 5 5 H 1.48498 * 109.47137 * 205.49706 * 3 2 1 6 6 H 1.48506 * 109.46604 * 325.49750 * 3 2 1 7 7 C 1.40033 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99942 * 38.19174 * 7 2 1 9 9 C 1.41537 * 120.00413 * 218.19291 * 7 2 1 10 10 C 1.41184 * 120.99556 * 16.50345 * 9 7 2 11 11 C 1.37589 * 119.01529 * 180.02562 * 10 9 7 12 12 N 1.32080 * 121.11053 * 0.02562 * 11 10 9 13 13 C 1.32471 * 122.23328 * 0.02562 * 12 11 10 14 14 N 1.39470 * 119.58004 * 180.02562 * 13 12 11 15 15 C 1.34774 * 119.99879 * 5.97604 * 14 13 12 16 16 O 1.21272 * 120.00218 * 5.34498 * 15 14 13 17 17 C 1.50704 * 119.99851 * 185.34912 * 15 14 13 18 18 H 1.09005 * 110.85372 * 307.34344 * 17 15 14 19 19 C 1.54733 * 110.97616 * 71.18650 * 17 15 14 20 20 C 1.51686 * 102.54817 * 142.33278 * 19 17 15 21 21 C 1.47481 * 125.86390 * 164.57280 * 20 19 17 22 22 O 1.21469 * 119.99989 * 0.02562 * 21 20 19 23 23 O 1.34749 * 119.99820 * 180.02562 * 21 20 19 24 24 N 1.29054 * 108.27515 * 344.61172 * 20 19 17 25 25 O 1.41398 * 112.87555 * 359.68127 * 24 20 19 26 26 C 1.38602 * 120.83725 * 359.70854 * 13 12 11 27 27 H 0.97009 * 120.00081 * 185.08078 * 1 2 3 28 28 H 1.07999 * 120.48555 * 0.02883 * 10 9 7 29 29 H 1.07998 * 119.43937 * 180.02562 * 11 10 9 30 30 H 0.97001 * 119.99887 * 185.97880 * 14 13 12 31 31 H 1.08998 * 110.79358 * 260.59757 * 19 17 15 32 32 H 1.09000 * 110.79032 * 24.06851 * 19 17 15 33 33 H 0.96703 * 116.99752 * 180.02562 * 23 21 20 34 34 H 1.08004 * 120.59859 * 180.31466 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3937 2.1013 1.3958 5 1 3.5833 1.4145 -0.6027 6 1 1.4896 2.6233 -0.7931 7 6 2.0076 -1.2127 0.0005 8 1 1.6409 -2.0482 -0.5774 9 6 3.1957 -1.3436 0.7585 10 6 3.5144 -0.4186 1.7763 11 6 4.6805 -0.5845 2.4876 12 7 5.4987 -1.5894 2.2321 13 6 5.2464 -2.4833 1.2875 14 7 6.1490 -3.5230 1.0649 15 6 7.2065 -3.6845 1.8846 16 8 7.3212 -2.9880 2.8708 17 6 8.2464 -4.7305 1.5758 18 1 7.7828 -5.7049 1.4211 19 6 9.0977 -4.3205 0.3504 20 6 10.4832 -4.8032 0.7353 21 6 11.6274 -4.9648 -0.1812 22 8 11.5030 -4.7011 -1.3604 23 8 12.8107 -5.4049 0.2896 24 7 10.4888 -5.0489 2.0022 25 8 9.2418 -4.7921 2.6174 26 6 4.0937 -2.4022 0.5222 27 1 -0.4851 -0.8368 0.0744 28 1 2.8527 0.4068 1.9934 29 1 4.9308 0.1188 3.2680 30 1 6.0156 -4.1298 0.3200 31 1 8.7482 -4.8256 -0.5500 32 1 9.0879 -3.2387 0.2171 33 1 13.5314 -5.4945 -0.3490 34 1 3.8894 -3.1360 -0.2434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480052.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:57 Heat of formation + Delta-G solvation = -79.244361 kcal Electronic energy + Delta-G solvation = -23524.362415 eV Core-core repulsion = 19617.026009 eV Total energy + Delta-G solvation = -3907.336405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.089 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.26991 -41.35386 -40.68618 -39.43473 -37.37731 -36.43387 -35.61646 -34.53806 -33.07769 -32.59491 -30.42863 -27.63857 -26.65053 -26.08966 -23.78664 -23.45441 -21.69484 -21.42179 -20.39397 -19.42779 -19.09535 -18.66168 -17.80395 -17.19150 -17.11100 -16.92124 -16.84652 -16.34037 -15.86110 -15.63094 -15.48757 -14.91714 -14.62438 -14.56580 -14.48280 -14.19427 -13.99718 -13.69405 -13.23716 -12.95457 -12.79429 -12.73345 -12.46850 -12.21808 -12.12816 -11.66651 -11.54183 -11.41556 -11.06328 -10.88336 -10.24910 -9.77684 -9.48604 -9.03820 -6.76164 -0.56859 0.51130 0.83284 0.93813 1.39311 1.42183 1.43809 1.55913 1.64624 1.77796 2.15400 2.19079 2.51899 2.84465 3.05297 3.31204 3.53712 3.55397 3.74572 4.06725 4.14308 4.37459 4.45815 4.55583 4.68282 4.71085 4.83452 5.18590 5.28326 5.34064 5.42838 5.60172 5.63217 5.88558 6.21293 6.40770 6.46795 6.62832 6.70256 7.05748 7.69733 7.73928 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.002900 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.401224 B = 9652.385856 C = 9978.914948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.036 3.964 3 Si 1.091 2.909 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.068 0.932 9 C 0.111 3.889 10 C -0.324 4.324 11 C 0.137 3.863 12 N -0.591 5.591 13 C 0.361 3.639 14 N -0.638 5.638 15 C 0.506 3.494 16 O -0.504 6.504 17 C 0.034 3.966 18 H 0.166 0.834 19 C -0.117 4.117 20 C 0.070 3.930 21 C 0.578 3.422 22 O -0.499 6.499 23 O -0.491 6.491 24 N -0.224 5.224 25 O -0.180 6.180 26 C -0.313 4.313 27 H 0.291 0.709 28 H 0.114 0.886 29 H 0.152 0.848 30 H 0.433 0.567 31 H 0.167 0.833 32 H 0.113 0.887 33 H 0.447 0.553 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.567 -10.156 -4.742 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.188 4.188 3 Si 0.910 3.090 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.086 0.914 9 C 0.103 3.897 10 C -0.348 4.348 11 C -0.016 4.016 12 N -0.311 5.311 13 C 0.135 3.865 14 N -0.288 5.288 15 C 0.290 3.710 16 O -0.375 6.375 17 C -0.027 4.027 18 H 0.183 0.817 19 C -0.156 4.156 20 C -0.123 4.123 21 C 0.417 3.583 22 O -0.384 6.384 23 O -0.305 6.305 24 N 0.032 4.968 25 O -0.201 6.201 26 C -0.338 4.338 27 H 0.102 0.898 28 H 0.131 0.869 29 H 0.169 0.831 30 H 0.272 0.728 31 H 0.185 0.815 32 H 0.131 0.869 33 H 0.312 0.688 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 18.443 -8.431 -2.650 20.451 hybrid contribution -1.377 -1.775 -1.629 2.775 sum 17.066 -10.207 -4.279 20.340 Atomic orbital electron populations 1.70583 1.09290 1.33458 1.27461 1.28260 0.95187 1.06893 0.88431 0.83432 0.75286 0.71028 0.79207 1.18163 1.19321 1.19449 1.20588 1.07286 1.00720 1.27794 0.91426 1.17808 0.90848 0.90746 0.90268 1.22017 1.02547 1.05900 1.04306 1.22188 0.89585 0.93344 0.96472 1.67364 1.34975 1.07006 1.21760 1.18191 0.88004 0.88251 0.92020 1.43191 1.23817 1.29845 1.31932 1.20627 0.82496 0.84552 0.83335 1.90848 1.74999 1.44909 1.26719 1.23852 0.90414 1.00888 0.87585 0.81719 1.22905 0.86069 1.05873 1.00755 1.24992 0.96456 0.98213 0.92635 1.18815 0.81728 0.73552 0.84166 1.91009 1.83971 1.46517 1.16908 1.84603 1.21146 1.77229 1.47530 1.78654 1.02136 1.06839 1.09167 1.91453 1.11327 1.90580 1.26772 1.21214 0.96983 1.06867 1.08757 0.89795 0.86878 0.83120 0.72751 0.81539 0.86930 0.68797 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.09 13.65 21.84 0.30 -38.80 16 2 C 0.04 1.75 5.16 85.29 0.44 2.19 16 3 Si 1.09 44.67 25.76 68.60 1.77 46.44 16 4 H -0.26 -9.91 6.44 99.48 0.64 -9.27 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 6 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.54 -27.17 9.33 23.52 0.22 -26.95 16 8 H 0.07 3.53 8.06 -2.91 -0.02 3.51 16 9 C 0.11 5.45 5.32 -21.11 -0.11 5.34 16 10 C -0.32 -15.35 7.87 22.84 0.18 -15.17 16 11 C 0.14 6.22 11.15 84.50 0.94 7.17 16 12 N -0.59 -27.80 7.90 -193.53 -1.53 -29.33 16 13 C 0.36 15.15 7.40 132.75 0.98 16.13 16 14 N -0.64 -19.24 5.39 -308.66 -1.66 -20.90 16 15 C 0.51 15.90 7.08 87.66 0.62 16.53 16 16 O -0.50 -21.91 14.89 15.01 0.22 -21.69 16 17 C 0.03 0.71 4.23 30.44 0.13 0.84 16 18 H 0.17 1.97 8.14 -2.38 -0.02 1.95 16 19 C -0.12 -1.81 6.44 30.75 0.20 -1.62 16 20 C 0.07 1.25 7.30 45.72 0.33 1.59 16 21 C 0.58 8.52 8.34 70.26 0.59 9.10 16 22 O -0.50 -9.02 17.74 19.93 0.35 -8.67 16 23 O -0.49 -4.84 13.43 -56.59 -0.76 -5.60 16 24 N -0.22 -5.26 12.51 -42.36 -0.53 -5.79 16 25 O -0.18 -5.04 11.83 -20.32 -0.24 -5.28 16 26 C -0.31 -13.66 9.73 22.99 0.22 -13.43 16 27 H 0.29 14.14 8.73 -92.70 -0.81 13.33 16 28 H 0.11 5.19 4.64 -2.91 -0.01 5.18 16 29 H 0.15 5.97 8.06 -2.91 -0.02 5.94 16 30 H 0.43 8.52 8.70 -92.71 -0.81 7.71 16 31 H 0.17 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.11 2.02 7.90 -2.39 -0.02 2.01 16 33 H 0.45 -0.53 9.11 -74.06 -0.67 -1.20 16 34 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -75.07 312.63 2.29 -72.79 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -0.38 Total: 15.13 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 4.74 Total: 1.70 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -3.42 Total: -94.82 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.42 Total: -41.24 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.77 Total: 46.44 kcal Total: -75.07 2.29 -72.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480052.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.456 kcal (2) G-P(sol) polarization free energy of solvation -75.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds