Wall clock time and date at job start Tue Mar 31 2020 09:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86804 * 120.00084 * 2 1 4 4 H 1.48495 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46989 * 300.00355 * 3 2 1 6 6 H 1.48497 * 109.46644 * 60.00334 * 3 2 1 7 7 C 1.40032 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99982 * 196.67385 * 7 2 1 9 9 C 1.41536 * 120.00326 * 16.67745 * 7 2 1 10 10 C 1.41184 * 120.99892 * 203.70469 * 9 7 2 11 11 C 1.37584 * 119.01431 * 180.02562 * 10 9 7 12 12 N 1.32075 * 121.11346 * 0.02562 * 11 10 9 13 13 C 1.32472 * 122.23023 * 359.97438 * 12 11 10 14 14 N 1.39475 * 119.58133 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99480 * 5.16886 * 14 13 12 16 16 O 1.21278 * 120.00730 * 355.13260 * 15 14 13 17 17 C 1.50709 * 119.99590 * 175.13432 * 15 14 13 18 18 H 1.08996 * 110.86068 * 58.79700 * 17 15 14 19 19 C 1.54740 * 110.97123 * 294.99895 * 17 15 14 20 20 C 1.51686 * 102.54834 * 217.67230 * 19 17 15 21 21 C 1.47474 * 125.86374 * 195.35764 * 20 19 17 22 22 O 1.21474 * 119.99723 * 359.97438 * 21 20 19 23 23 O 1.34755 * 120.00385 * 179.97438 * 21 20 19 24 24 N 1.29055 * 108.27372 * 15.39246 * 20 19 17 25 25 O 1.41386 * 112.87927 * 0.31682 * 24 20 19 26 26 C 1.38596 * 120.84007 * 0.27490 * 13 12 11 27 27 H 0.96999 * 120.00272 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.48752 * 0.04068 * 10 9 7 29 29 H 1.08001 * 119.44528 * 179.97438 * 11 10 9 30 30 H 0.96996 * 119.99811 * 185.17653 * 14 13 12 31 31 H 1.09005 * 110.79247 * 335.93436 * 19 17 15 32 32 H 1.08995 * 110.79467 * 99.40693 * 19 17 15 33 33 H 0.96694 * 117.00669 * 179.97438 * 23 21 20 34 34 H 1.08006 * 120.59920 * 179.72868 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3963 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0535 -1.2325 0.2678 9 6 1.3445 -2.4126 -0.3528 10 6 1.8225 -3.6647 0.0910 11 6 1.1465 -4.8053 -0.2763 12 7 0.0656 -4.7444 -1.0328 13 6 -0.4234 -3.5953 -1.4750 14 7 -1.5691 -3.5952 -2.2705 15 6 -2.2311 -4.7467 -2.4986 16 8 -1.7830 -5.7958 -2.0868 17 6 -3.5282 -4.7309 -3.2658 18 1 -3.3859 -4.3079 -4.2602 19 6 -4.6223 -3.9612 -2.4879 20 6 -5.8684 -4.7756 -2.7792 21 6 -7.2588 -4.3365 -2.5579 22 8 -7.4819 -3.2325 -2.1029 23 8 -8.2817 -5.1599 -2.8604 24 7 -5.5030 -5.9189 -3.2533 25 8 -4.0984 -6.0532 -3.3430 26 6 0.1920 -2.3937 -1.1616 27 1 -0.4850 0.8400 0.0004 28 1 2.7055 -3.7261 0.7098 29 1 1.5062 -5.7669 0.0589 30 1 -1.8893 -2.7663 -2.6594 31 1 -4.4054 -3.9546 -1.4196 32 1 -4.7260 -2.9454 -2.8691 33 1 -9.1752 -4.8282 -2.6977 34 1 -0.2074 -1.4595 -1.5279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:00 Heat of formation + Delta-G solvation = -50.090965 kcal Electronic energy + Delta-G solvation = -23690.778812 eV Core-core repulsion = 19784.706593 eV Total energy + Delta-G solvation = -3906.072219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.089 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24846 -40.29709 -39.25781 -37.71174 -36.68684 -34.53196 -33.94632 -33.50267 -31.52640 -30.61093 -28.61229 -26.10230 -25.76370 -24.90696 -22.13196 -21.74626 -20.81779 -19.97356 -18.65038 -17.98148 -17.77735 -17.57576 -16.32873 -16.10552 -15.93410 -15.55765 -15.27184 -14.55641 -14.38278 -14.29954 -13.94910 -13.69912 -13.52220 -13.10562 -12.85403 -12.69865 -12.57768 -12.16640 -12.04249 -11.58976 -11.51999 -11.38914 -11.28304 -10.98183 -10.41258 -10.28442 -10.20363 -9.92196 -9.50866 -9.44767 -8.10479 -7.85259 -7.17414 -6.91554 -4.70116 0.29258 1.81213 2.21964 2.34869 2.51223 2.69700 2.97006 3.01732 3.03885 3.24367 3.38867 3.78317 3.82325 4.03269 4.28737 4.49887 4.58073 4.77250 4.90908 5.22804 5.27076 5.58101 5.78648 5.86033 6.42996 6.47028 6.55559 6.71207 6.83748 7.00374 7.25551 7.26053 7.33187 7.60394 7.79537 8.06214 8.29057 8.54717 8.64299 8.68929 9.56406 9.97131 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.003408 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.372513 B = 8213.203908 C = 9492.443786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.453 4.453 8 H 0.084 0.916 9 C 0.143 3.857 10 C -0.282 4.282 11 C 0.121 3.879 12 N -0.557 5.557 13 C 0.334 3.666 14 N -0.649 5.649 15 C 0.504 3.496 16 O -0.449 6.449 17 C 0.024 3.976 18 H 0.122 0.878 19 C -0.121 4.121 20 C 0.054 3.946 21 C 0.566 3.434 22 O -0.482 6.482 23 O -0.495 6.495 24 N -0.203 5.203 25 O -0.141 6.141 26 C -0.240 4.240 27 H 0.282 0.718 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.409 0.591 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.423 0.577 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.308 -0.463 -6.454 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.102 0.898 9 C 0.135 3.865 10 C -0.306 4.306 11 C -0.033 4.033 12 N -0.276 5.276 13 C 0.110 3.890 14 N -0.297 5.297 15 C 0.284 3.716 16 O -0.317 6.317 17 C -0.038 4.038 18 H 0.140 0.860 19 C -0.161 4.161 20 C -0.139 4.139 21 C 0.406 3.594 22 O -0.366 6.366 23 O -0.306 6.306 24 N 0.055 4.945 25 O -0.165 6.165 26 C -0.265 4.265 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.143 0.857 30 H 0.245 0.755 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.284 0.716 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.627 -2.878 -6.712 14.587 hybrid contribution 0.305 3.068 0.452 3.116 sum -12.321 0.190 -6.260 13.822 Atomic orbital electron populations 1.69769 1.07719 1.29450 1.34220 1.25968 0.94784 1.01570 0.91787 0.86202 0.81059 0.80491 0.78704 1.18239 1.19561 1.19826 1.19627 0.97918 0.90625 1.40227 0.89826 1.17570 0.89803 0.92329 0.86825 1.21922 1.05195 0.93853 1.09596 1.21758 0.90766 0.96936 0.93859 1.67182 1.15691 1.26470 1.18298 1.18100 0.87013 0.91012 0.92831 1.43244 1.26297 1.09998 1.50183 1.19780 0.84802 0.85198 0.81794 1.90867 1.65366 1.29566 1.45870 1.23808 0.94054 0.84820 1.01127 0.86025 1.22839 0.86307 1.01891 1.05033 1.24658 0.93688 0.95721 0.99835 1.19109 0.83766 0.81974 0.74562 1.91005 1.84868 1.20714 1.39989 1.84637 1.19103 1.47884 1.78976 1.78591 0.94594 1.16370 1.04964 1.91466 1.09371 1.24260 1.91414 1.21520 1.02481 0.95376 1.07153 0.90662 0.87835 0.85731 0.75536 0.86136 0.85629 0.71645 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.46 10.92 55.55 0.61 -17.85 16 2 C 0.08 1.81 5.20 -17.35 -0.09 1.72 16 3 Si 0.91 17.19 29.59 -169.99 -5.03 12.16 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.45 -11.19 9.12 -37.65 -0.34 -11.54 16 8 H 0.08 1.99 7.90 -52.48 -0.41 1.58 16 9 C 0.14 3.61 5.60 -106.55 -0.60 3.02 16 10 C -0.28 -6.70 9.90 -38.70 -0.38 -7.08 16 11 C 0.12 2.82 11.15 -17.69 -0.20 2.62 16 12 N -0.56 -13.78 7.85 -12.52 -0.10 -13.88 16 13 C 0.33 7.68 7.42 -154.70 -1.15 6.53 16 14 N -0.65 -11.56 5.38 -11.49 -0.06 -11.62 16 15 C 0.50 8.95 7.10 -10.98 -0.08 8.87 16 16 O -0.45 -10.27 14.84 -13.29 -0.20 -10.47 16 17 C 0.02 0.31 4.24 -26.96 -0.11 0.20 16 18 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 19 C -0.12 -1.29 6.43 -26.48 -0.17 -1.46 16 20 C 0.05 0.60 7.30 -79.51 -0.58 0.02 16 21 C 0.57 5.51 8.34 34.49 0.29 5.79 16 22 O -0.48 -5.56 17.74 -19.24 -0.34 -5.90 16 23 O -0.49 -3.52 13.43 -40.64 -0.55 -4.07 16 24 N -0.20 -2.73 12.51 35.26 0.44 -2.29 16 25 O -0.14 -2.19 11.82 -30.22 -0.36 -2.54 16 26 C -0.24 -5.75 8.62 -38.48 -0.33 -6.09 16 27 H 0.28 5.96 8.29 -40.82 -0.34 5.62 16 28 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 29 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 30 H 0.41 5.60 8.70 -40.82 -0.36 5.24 16 31 H 0.12 1.40 7.90 -51.93 -0.41 0.99 16 32 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.42 0.72 9.11 45.56 0.42 1.13 16 34 H 0.13 3.03 6.20 -52.48 -0.33 2.70 16 LS Contribution 316.33 15.07 4.77 4.77 Total: -1.00 -33.93 316.33 -6.48 -40.41 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -1.92 Total: 8.68 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -3.75 Total: 2.61 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.89 Total: -45.64 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -1.44 Total: -22.99 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.93 -6.48 -40.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.678 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds