Wall clock time and date at job start Tue Mar 31 2020 08:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00109 * 2 1 4 4 H 1.48497 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46637 * 299.99548 * 3 2 1 6 6 H 1.48501 * 109.47229 * 59.99299 * 3 2 1 7 7 C 1.37881 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99753 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47094 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47533 * 179.97438 * 10 9 7 12 12 O 1.42894 * 109.47666 * 180.02562 * 11 10 9 13 13 C 1.34910 * 117.00481 * 180.02562 * 12 11 10 14 14 O 1.21624 * 119.99121 * 359.97438 * 13 12 11 15 15 C 1.46234 * 120.00079 * 179.97438 * 13 12 11 16 16 C 1.34910 * 119.99520 * 173.21714 * 15 13 12 17 17 C 1.47176 * 120.00317 * 349.04148 * 16 15 13 18 18 C 1.39852 * 120.16918 * 316.11032 * 17 16 15 19 19 C 1.37887 * 119.82185 * 179.74082 * 18 17 16 20 20 C 1.38403 * 120.17497 * 0.53880 * 19 18 17 21 21 N 1.48014 * 119.82867 * 179.73785 * 20 19 18 22 22 O 1.21799 * 120.00416 * 179.97438 * 21 20 19 23 23 O 1.21800 * 120.00298 * 359.97438 * 21 20 19 24 24 C 1.38413 * 120.34596 * 359.71732 * 20 19 18 25 25 C 1.37887 * 120.17238 * 0.02562 * 24 20 19 26 26 H 0.97000 * 119.99824 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47440 * 59.99551 * 9 7 2 28 28 H 1.09001 * 109.47154 * 299.99279 * 9 7 2 29 29 H 1.09003 * 109.47455 * 60.00305 * 10 9 7 30 30 H 1.09003 * 109.47492 * 300.00134 * 10 9 7 31 31 H 1.09008 * 109.46683 * 59.99957 * 11 10 9 32 32 H 1.08995 * 109.47190 * 300.00381 * 11 10 9 33 33 H 1.07998 * 119.99757 * 353.21326 * 15 13 12 34 34 H 1.08003 * 119.99601 * 169.03818 * 16 15 13 35 35 H 1.07998 * 120.08754 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.91181 * 180.23386 * 19 18 17 37 37 H 1.08001 * 119.90861 * 179.97438 * 24 20 19 38 38 H 1.07997 * 120.08552 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 8 2.4088 -6.0733 0.0018 13 6 1.8932 -7.3200 0.0019 14 8 0.6874 -7.4792 0.0019 15 6 2.7840 -8.4796 0.0019 16 6 2.2748 -9.7213 0.1400 17 6 0.8669 -9.9002 0.5298 18 6 0.3170 -9.1227 1.5540 19 6 -1.0043 -9.2925 1.9097 20 6 -1.7828 -10.2371 1.2638 21 7 -3.1987 -10.4170 1.6558 22 8 -3.8869 -11.2470 1.0892 23 8 -3.6758 -9.7350 2.5451 24 6 -1.2444 -11.0141 0.2528 25 6 0.0738 -10.8526 -0.1181 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.8719 -3.6044 0.8905 30 1 2.8720 -3.6044 -0.8894 31 1 0.8533 -5.0451 -0.8887 32 1 0.8539 -5.0446 0.8913 33 1 3.8495 -8.3421 -0.1087 34 1 2.9003 -10.5840 -0.0356 35 1 0.9243 -8.3881 2.0617 36 1 -1.4315 -8.6903 2.6979 37 1 -1.8582 -11.7494 -0.2463 38 1 0.4926 -11.4599 -0.9068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760124607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:33 Heat of formation + Delta-G solvation = -49.511762 kcal Electronic energy + Delta-G solvation = -23338.419863 eV Core-core repulsion = 19535.913103 eV Total energy + Delta-G solvation = -3802.506760 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.30644 -40.84638 -39.51465 -36.97098 -36.69239 -34.61042 -34.05961 -31.83920 -31.76527 -31.07447 -27.61143 -26.69202 -24.57956 -23.52058 -23.03228 -22.11383 -20.55035 -19.79670 -19.59318 -18.79380 -18.13368 -17.65303 -16.95194 -16.59019 -16.21217 -15.76800 -15.35439 -14.79965 -14.61204 -14.47703 -14.32492 -13.93867 -13.45271 -13.29913 -12.49249 -12.30670 -12.25004 -11.95415 -11.90136 -11.69685 -11.33811 -11.26892 -11.03447 -10.99778 -10.72364 -10.64303 -10.49761 -10.46426 -9.81616 -9.61237 -9.59451 -9.20798 -9.03424 -8.43547 -6.07864 -4.11303 -0.58914 0.46899 0.72251 1.24916 1.32960 2.66042 2.76490 3.03057 3.26940 3.34571 3.38412 3.91043 4.05840 4.18153 4.38445 4.46472 4.55459 4.70493 4.84158 4.97478 5.22914 5.28157 5.30891 5.39717 5.45740 5.45942 5.49384 5.63159 5.80745 5.91554 5.93975 6.27055 6.33762 6.44534 6.71361 6.89906 7.49798 7.54589 7.64716 7.69910 7.90018 8.30600 8.95171 9.53406 11.03550 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.017448 B = 0.002572 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.373930 B =10882.831045 C =12225.384496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.066 3.934 12 O -0.344 6.344 13 C 0.477 3.523 14 O -0.501 6.501 15 C -0.157 4.157 16 C -0.040 4.040 17 C -0.017 4.017 18 C -0.048 4.048 19 C -0.061 4.061 20 C -0.038 4.038 21 N 0.029 4.971 22 O -0.166 6.166 23 O -0.160 6.160 24 C -0.062 4.062 25 C -0.102 4.102 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.138 0.862 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 -25.591 0.971 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.008 4.008 12 O -0.260 6.260 13 C 0.323 3.677 14 O -0.392 6.392 15 C -0.175 4.175 16 C -0.058 4.058 17 C -0.018 4.018 18 C -0.066 4.066 19 C -0.080 4.080 20 C -0.121 4.121 21 N 0.548 4.452 22 O -0.381 6.381 23 O -0.376 6.376 24 C -0.081 4.081 25 C -0.121 4.121 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.173 0.827 34 H 0.174 0.826 35 H 0.156 0.844 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.120 -25.370 0.780 25.893 hybrid contribution -0.133 1.114 -0.014 1.122 sum 4.987 -24.256 0.766 24.775 Atomic orbital electron populations 1.69976 1.06095 1.26727 1.50457 1.25040 0.94884 0.99414 0.95147 0.86489 0.80056 0.83530 0.77656 1.19674 1.20940 1.20929 1.21192 0.93136 0.90643 1.51087 0.92379 1.19053 0.93816 0.90778 0.97679 1.21774 0.99909 0.90900 1.01982 1.23162 0.91534 0.83967 1.02093 1.86207 1.42355 1.14829 1.82609 1.21451 0.87663 0.84693 0.73882 1.90950 1.16369 1.86580 1.45299 1.22588 1.00732 0.89796 1.04412 1.22505 0.92879 0.97307 0.93133 1.19394 0.93916 0.94021 0.94438 1.21168 0.93944 0.95924 0.95597 1.20871 0.93382 0.94936 0.98847 1.21204 0.81780 1.05194 1.03885 1.43659 1.03258 0.98999 0.99304 1.94517 1.59331 1.29530 1.54727 1.94556 1.75694 1.44176 1.23203 1.20877 0.95869 0.97586 0.93783 1.21202 0.92412 0.98264 1.00200 0.92887 0.96276 0.96241 0.92115 0.92120 0.91661 0.91666 0.82736 0.82568 0.84388 0.82928 0.82980 0.83444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.11 -2.15 5.52 -26.73 -0.15 -2.30 16 11 C 0.07 1.14 5.38 37.16 0.20 1.34 16 12 O -0.34 -5.10 10.12 -41.07 -0.42 -5.52 16 13 C 0.48 5.97 6.92 33.94 0.24 6.20 16 14 O -0.50 -7.36 11.93 -19.36 -0.23 -7.59 16 15 C -0.16 -1.18 10.04 -37.55 -0.38 -1.56 16 16 C -0.04 -0.23 9.81 -37.14 -0.36 -0.59 16 17 C -0.02 -0.14 4.53 -105.06 -0.48 -0.62 16 18 C -0.05 -0.47 6.61 -39.11 -0.26 -0.73 16 19 C -0.06 -0.67 9.53 -39.65 -0.38 -1.05 16 20 C -0.04 -0.43 6.86 -79.82 -0.55 -0.98 16 21 N 0.03 0.40 4.45 34.02 0.15 0.55 16 22 O -0.17 -2.30 18.43 -29.46 -0.54 -2.84 16 23 O -0.16 -2.35 18.43 -29.46 -0.54 -2.90 16 24 C -0.06 -0.55 9.54 -39.65 -0.38 -0.93 16 25 C -0.10 -0.73 9.80 -39.11 -0.38 -1.11 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.16 8.13 -51.92 -0.42 0.74 16 32 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 33 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.16 0.28 8.06 -52.48 -0.42 -0.15 16 35 H 0.14 1.30 7.03 -52.49 -0.37 0.93 16 36 H 0.15 1.58 7.60 -52.49 -0.40 1.18 16 37 H 0.15 1.10 7.59 -52.49 -0.40 0.70 16 38 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -33.31 342.86 -8.64 -41.94 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -4.51 Total: -4.06 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -3.42 Total: -15.18 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.89 Total: -25.34 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -1.73 Total: -18.85 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.31 -8.64 -41.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760124607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.567 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds