Wall clock time and date at job start Tue Mar 31 2020 08:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43193 * 120.00403 * 62.04938 * 3 2 1 5 5 N 3.51032 * 140.68865 * 62.04657 * 2 1 3 6 6 C 1.41134 * 119.99715 * 242.05232 * 3 2 1 7 7 C 1.38955 * 120.00085 * 5.17977 * 6 3 2 8 8 H 1.08001 * 119.99912 * 331.27999 * 7 6 3 9 9 C 1.40858 * 119.99681 * 151.27699 * 7 6 3 10 10 N 1.30320 * 120.00332 * 2.76607 * 9 7 6 11 11 Si 1.86804 * 119.99633 * 182.76695 * 9 7 6 12 12 H 1.48498 * 109.47002 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47361 * 120.00059 * 11 9 7 14 14 H 1.48504 * 109.46915 * 239.99878 * 11 9 7 15 15 N 1.38428 * 120.00042 * 185.18661 * 6 3 2 16 16 C 1.38598 * 120.00457 * 119.13880 * 15 6 3 17 17 N 1.32374 * 119.86570 * 358.37940 * 16 15 6 18 18 C 1.31817 * 121.86469 * 179.97438 * 17 16 15 19 19 C 1.38531 * 121.26276 * 359.97438 * 18 17 16 20 20 C 1.38230 * 119.27171 * 0.02562 * 19 18 17 21 21 C 1.39908 * 118.60246 * 359.97438 * 20 19 18 22 22 C 1.43203 * 120.63431 * 180.02562 * 21 20 19 23 23 N 7.04438 * 172.25965 * 276.61875 * 2 1 3 24 24 C 1.51056 * 109.95303 * 179.97438 * 20 19 18 25 25 C 1.54417 * 105.12992 * 342.96079 * 24 20 19 26 26 C 1.51561 * 130.98115 * 179.82782 * 19 18 17 27 27 H 0.97004 * 119.99843 * 185.00330 * 10 9 7 28 28 H 0.97002 * 119.99841 * 299.13873 * 15 6 3 29 29 H 1.08003 * 119.36712 * 180.02562 * 18 17 16 30 30 H 1.09005 * 110.30574 * 224.05101 * 24 20 19 31 31 H 1.09000 * 110.39871 * 101.92487 * 24 20 19 32 32 H 1.09005 * 110.81517 * 144.35113 * 25 24 20 33 33 H 1.08999 * 110.82046 * 267.70066 * 25 24 20 34 34 H 1.08997 * 110.24909 * 78.16951 * 26 19 18 35 35 H 1.08998 * 110.48502 * 315.94254 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.5803 -1.0954 5 7 3.8520 -1.0425 -1.9644 6 6 3.2734 0.5738 1.0797 7 6 2.5826 1.0403 2.1915 8 1 1.5701 1.4009 2.0860 9 6 3.2030 1.0429 3.4561 10 7 4.4426 0.6585 3.5746 11 14 2.2489 1.5974 4.9633 12 1 0.8714 1.9818 4.5634 13 1 2.1875 0.4864 5.9467 14 1 2.9296 2.7654 5.5780 15 7 4.6534 0.6713 1.0312 16 6 5.2627 1.9149 1.0875 17 7 4.5216 3.0096 1.1554 18 6 5.0595 4.2118 1.2111 19 6 6.4338 4.3856 1.2017 20 6 7.2550 3.2759 1.1319 21 6 6.6649 2.0086 1.0735 22 6 7.4742 0.8295 1.0008 23 7 8.1162 -0.1094 0.9424 24 6 8.7032 3.7053 1.1343 25 6 8.6789 5.2071 0.7762 26 6 7.2769 5.6441 1.2528 27 1 4.8475 0.5909 4.4535 28 1 5.1940 -0.1307 0.9577 29 1 4.4164 5.0778 1.2660 30 1 9.2646 3.1467 0.3853 31 1 9.1413 3.5587 2.1216 32 1 9.4571 5.7467 1.3160 33 1 8.7847 5.3507 -0.2991 34 1 7.3256 6.0243 2.2731 35 1 6.8700 6.4031 0.5847 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169078564.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:04 Heat of formation + Delta-G solvation = 120.100124 kcal Electronic energy + Delta-G solvation = -23475.238841 eV Core-core repulsion = 20051.981426 eV Total energy + Delta-G solvation = -3423.257415 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.097 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.63221 -38.01203 -36.24172 -36.06842 -35.07669 -34.72144 -33.55872 -31.87653 -30.43186 -29.00283 -27.17796 -26.96536 -24.13388 -22.36662 -21.34431 -20.71240 -18.92558 -18.05802 -17.48488 -17.24752 -16.35783 -16.18201 -15.66877 -14.83038 -14.29635 -14.11290 -13.65765 -13.41248 -13.01076 -12.85665 -12.70888 -12.68664 -12.62020 -12.53823 -12.30169 -11.99141 -11.81869 -11.70906 -11.61728 -11.55864 -11.39801 -11.25500 -11.21439 -11.00505 -10.94457 -10.66788 -10.08648 -9.87380 -9.15427 -9.13395 -8.20645 -7.76598 -7.05390 -5.40786 1.06018 1.59833 2.19526 2.70757 2.79271 2.84629 2.98265 3.37265 3.40864 3.55205 3.84478 4.04400 4.17900 4.21014 4.27700 4.33984 4.51198 4.54106 4.88797 4.93005 5.15681 5.16941 5.26437 5.45147 5.58659 5.65566 5.67401 5.69498 5.85809 5.99682 6.02590 6.13199 6.22808 6.33386 6.45544 6.68687 7.06597 7.24779 7.53263 7.73790 7.83752 7.90424 8.19112 8.63053 8.93204 9.12013 9.22383 Molecular weight = 305.10amu Principal moments of inertia in cm(-1) A = 0.011815 B = 0.006049 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.234928 B = 4627.748199 C = 5589.206538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C 0.328 3.672 3 C -0.305 4.305 4 C 0.305 3.695 5 N -0.531 5.531 6 C 0.383 3.617 7 C -0.350 4.350 8 H 0.113 0.887 9 C 0.073 3.927 10 N -0.738 5.738 11 Si 0.931 3.069 12 H -0.247 1.247 13 H -0.264 1.264 14 H -0.263 1.263 15 N -0.625 5.625 16 C 0.493 3.507 17 N -0.507 5.507 18 C 0.197 3.803 19 C -0.234 4.234 20 C 0.030 3.970 21 C -0.148 4.148 22 C 0.271 3.729 23 N -0.438 5.438 24 C -0.088 4.088 25 C -0.119 4.119 26 C -0.061 4.061 27 H 0.300 0.700 28 H 0.407 0.593 29 H 0.156 0.844 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.669 12.785 5.776 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.213 5.213 2 C 0.020 3.980 3 C -0.323 4.323 4 C -0.002 4.002 5 N -0.213 5.213 6 C 0.280 3.720 7 C -0.377 4.377 8 H 0.131 0.869 9 C -0.156 4.156 10 N -0.357 5.357 11 Si 0.752 3.248 12 H -0.170 1.170 13 H -0.189 1.189 14 H -0.188 1.188 15 N -0.245 5.245 16 C 0.254 3.746 17 N -0.222 5.222 18 C 0.034 3.966 19 C -0.239 4.239 20 C 0.020 3.980 21 C -0.160 4.160 22 C -0.044 4.044 23 N -0.115 5.115 24 C -0.125 4.125 25 C -0.156 4.156 26 C -0.099 4.099 27 H 0.112 0.888 28 H 0.245 0.755 29 H 0.173 0.827 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.935 10.449 4.489 13.867 hybrid contribution 0.845 0.306 1.162 1.469 sum 8.781 10.755 5.651 14.990 Atomic orbital electron populations 1.81058 1.12139 1.17175 1.10896 1.24583 0.91180 0.90626 0.91636 1.12912 0.83216 1.36108 1.00109 1.25255 0.92585 0.90857 0.91492 1.81094 1.09716 1.17886 1.12651 1.16727 0.79315 0.87111 0.88833 1.20216 1.00536 1.27019 0.89952 0.86929 1.26545 0.94691 0.91774 1.02634 1.69482 1.11791 1.25664 1.28807 0.85812 0.81097 0.79576 0.78271 1.16988 1.18883 1.18792 1.41430 1.05953 1.04383 1.72697 1.17703 0.85165 0.86345 0.85386 1.67556 1.37741 0.97002 1.19881 1.22173 0.91320 0.94050 0.89017 1.21101 0.94556 0.95862 1.12372 1.20376 0.96437 0.90678 0.90503 1.15669 0.90104 0.87722 1.22518 1.25483 0.93366 0.92764 0.92740 1.81313 1.09057 1.09810 1.11290 1.21116 0.92000 0.96608 1.02792 1.22308 0.97214 0.94429 1.01660 1.20810 0.93013 0.94544 1.01509 0.88776 0.75535 0.82658 0.90413 0.89429 0.90585 0.90852 0.90775 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.57 18.54 41.84 0.78 -11.80 16 2 C 0.33 7.51 13.99 -22.47 -0.31 7.20 16 3 C -0.31 -6.75 5.88 -104.95 -0.62 -7.37 16 4 C 0.31 7.04 14.81 -22.47 -0.33 6.70 16 5 N -0.53 -12.78 18.54 41.85 0.78 -12.00 16 6 C 0.38 8.02 5.43 -83.52 -0.45 7.57 16 7 C -0.35 -7.10 7.57 -38.33 -0.29 -7.39 16 8 H 0.11 2.33 7.17 -52.49 -0.38 1.96 16 9 C 0.07 1.36 5.34 -17.20 -0.09 1.27 16 10 N -0.74 -13.96 11.08 55.60 0.62 -13.34 16 11 Si 0.93 14.76 29.57 -169.99 -5.03 9.73 16 12 H -0.25 -4.03 7.11 56.52 0.40 -3.63 16 13 H -0.26 -4.19 7.11 56.52 0.40 -3.79 16 14 H -0.26 -4.11 7.11 56.52 0.40 -3.70 16 15 N -0.62 -12.35 3.17 -9.52 -0.03 -12.38 16 16 C 0.49 9.00 6.23 -154.90 -0.96 8.04 16 17 N -0.51 -8.84 8.91 -12.09 -0.11 -8.95 16 18 C 0.20 2.69 11.17 -17.45 -0.19 2.50 16 19 C -0.23 -2.85 6.18 -104.09 -0.64 -3.50 16 20 C 0.03 0.41 6.07 -103.83 -0.63 -0.22 16 21 C -0.15 -2.46 5.77 -106.48 -0.61 -3.07 16 22 C 0.27 4.78 13.95 -22.38 -0.31 4.47 16 23 N -0.44 -8.29 18.56 41.95 0.78 -7.51 16 24 C -0.09 -0.91 6.52 -26.97 -0.18 -1.09 16 25 C -0.12 -0.94 7.07 -25.26 -0.18 -1.12 16 26 C -0.06 -0.52 6.79 -26.73 -0.18 -0.70 16 27 H 0.30 5.21 8.29 -40.82 -0.34 4.87 16 28 H 0.41 8.18 7.66 -40.82 -0.31 7.86 16 29 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 332.49 15.07 5.01 5.01 Total: -1.00 -25.96 332.49 -5.99 -31.94 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -2.78 Total: 6.00 kcal Atomic # 6 Polarization: 19.29 SS G_CDS: -6.00 Total: 13.29 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: 2.81 Total: -65.98 kcal Atomic # 14 Polarization: 14.76 SS G_CDS: -5.03 Total: 9.73 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -25.96 -5.99 -31.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169078564.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.044 kcal (2) G-P(sol) polarization free energy of solvation -25.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds