Wall clock time and date at job start Tue Mar 31 2020 08:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99889 * 2 1 4 4 H 1.48500 * 109.46632 * 269.99805 * 3 2 1 5 5 H 1.48492 * 109.46957 * 29.99768 * 3 2 1 6 6 H 1.48498 * 109.46920 * 150.00190 * 3 2 1 7 7 C 1.37879 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00066 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99658 * 0.02562 * 7 2 1 10 10 O 1.42891 * 110.88865 * 303.87804 * 9 7 2 11 11 C 1.55159 * 111.00241 * 179.97438 * 9 7 2 12 12 C 1.54318 * 102.94288 * 206.38710 * 11 9 7 13 13 N 1.47024 * 107.27354 * 22.19460 * 12 11 9 14 14 C 1.34779 * 125.65230 * 181.02495 * 13 12 11 15 15 O 1.21688 * 120.00251 * 180.02562 * 14 13 12 16 16 C 1.46437 * 119.99639 * 0.02562 * 14 13 12 17 17 C 1.34808 * 119.99650 * 187.09428 * 16 14 13 18 18 C 1.47207 * 120.00121 * 11.28508 * 17 16 14 19 19 C 1.39865 * 120.15808 * 222.56300 * 18 17 16 20 20 C 1.37881 * 119.87490 * 180.02562 * 19 18 17 21 21 C 1.38379 * 120.20130 * 359.97438 * 20 19 18 22 22 C 1.38601 * 120.32034 * 0.02562 * 21 20 19 23 23 F 1.35101 * 119.93574 * 179.97438 * 22 21 20 24 24 C 1.38140 * 120.11927 * 0.02562 * 22 21 20 25 25 C 1.47426 * 108.70193 * 1.28821 * 13 12 11 26 26 H 0.96994 * 120.00151 * 0.02562 * 1 2 3 27 27 H 0.96705 * 113.99841 * 56.12050 * 10 9 7 28 28 H 1.09003 * 110.71796 * 88.02491 * 11 9 7 29 29 H 1.09000 * 110.71985 * 324.75204 * 11 9 7 30 30 H 1.09010 * 109.88483 * 262.77809 * 12 11 9 31 31 H 1.09003 * 110.01554 * 141.68538 * 12 11 9 32 32 H 1.07999 * 120.00146 * 7.08695 * 16 14 13 33 33 H 1.08001 * 119.99670 * 191.28937 * 17 16 14 34 34 H 1.08003 * 120.05803 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.89322 * 180.25155 * 20 19 18 36 36 H 1.08000 * 119.83898 * 180.02562 * 21 20 19 37 37 H 1.07995 * 120.09823 * 179.97438 * 24 22 21 38 38 H 1.08994 * 110.36814 * 94.47874 * 25 13 12 39 39 H 1.08997 * 110.36701 * 216.80558 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.3515 -2.5680 1.1085 11 6 2.2275 -3.7050 0.0005 12 6 1.3979 -4.8214 -0.6679 13 7 0.3465 -4.1685 -1.4615 14 6 -0.6002 -4.8009 -2.1829 15 8 -1.4238 -4.1557 -2.8043 16 6 -0.6376 -6.2643 -2.2188 17 6 -1.4902 -6.8965 -3.0498 18 6 -2.2012 -6.1376 -4.0917 19 6 -3.5564 -6.3812 -4.3372 20 6 -4.2165 -5.6674 -5.3148 21 6 -3.5423 -4.7106 -6.0531 22 6 -2.1994 -4.4625 -5.8168 23 9 -1.5487 -3.5271 -6.5425 24 6 -1.5248 -5.1707 -4.8412 25 6 0.5031 -2.7074 -1.3425 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2781 -1.8352 1.1502 28 1 2.4975 -3.9826 1.0195 29 1 3.1172 -3.4808 -0.5878 30 1 0.9465 -5.4554 0.0954 31 1 2.0349 -5.4210 -1.3183 32 1 0.0180 -6.8371 -1.5796 33 1 -1.6517 -7.9598 -2.9511 34 1 -4.0848 -7.1272 -3.7619 35 1 -5.2639 -5.8524 -5.5018 36 1 -4.0652 -4.1546 -6.8172 37 1 -0.4783 -4.9774 -4.6576 38 1 1.0941 -2.3204 -2.1725 39 1 -0.4726 -2.2226 -1.3119 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014257.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:00 Heat of formation + Delta-G solvation = -72.769079 kcal Electronic energy + Delta-G solvation = -24922.165215 eV Core-core repulsion = 21131.022732 eV Total energy + Delta-G solvation = -3791.142483 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.61504 -39.84088 -38.61352 -37.14368 -34.30769 -33.66344 -32.16612 -30.58131 -30.28875 -29.42449 -27.87675 -25.56061 -23.81750 -22.72554 -22.27938 -20.83988 -19.63639 -18.38763 -17.51052 -17.17949 -16.35804 -16.06664 -16.02851 -15.34451 -15.23119 -14.95211 -14.71186 -14.40679 -13.89625 -13.78540 -13.10588 -13.04633 -12.92736 -12.81659 -12.70424 -12.16505 -11.90787 -11.67898 -11.61905 -11.45577 -11.06499 -10.98955 -10.80985 -10.62094 -10.51231 -10.20835 -9.93615 -9.49436 -9.37821 -8.70690 -8.54783 -8.38555 -8.06986 -7.73650 -6.30830 -4.40615 0.73854 1.42151 1.90847 3.19480 3.27323 3.29645 3.64511 3.73513 3.80382 4.24830 4.42035 4.71433 4.84449 4.94575 5.00652 5.11237 5.20984 5.36583 5.39246 5.53214 5.63215 5.75841 5.85039 5.99024 6.01682 6.10735 6.17826 6.23885 6.31947 6.45496 6.47593 6.59485 6.69739 6.82566 6.97972 7.04945 7.23932 7.32197 7.72480 7.97058 8.21325 8.62279 8.73889 9.29353 9.43752 10.76466 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.004139 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.439947 B = 6763.966446 C = 7724.352970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.584 6.584 11 C -0.119 4.119 12 C 0.103 3.897 13 N -0.600 5.600 14 C 0.539 3.461 15 O -0.539 6.539 16 C -0.186 4.186 17 C -0.048 4.048 18 C -0.037 4.037 19 C -0.113 4.113 20 C -0.108 4.108 21 C -0.147 4.147 22 C 0.085 3.915 23 F -0.144 7.144 24 C -0.065 4.065 25 C 0.093 3.907 26 H 0.271 0.729 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.060 0.940 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 -14.061 -7.257 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.157 4.157 12 C -0.020 4.020 13 N -0.331 5.331 14 C 0.328 3.672 15 O -0.420 6.420 16 C -0.206 4.206 17 C -0.067 4.067 18 C -0.037 4.037 19 C -0.132 4.132 20 C -0.126 4.126 21 C -0.166 4.166 22 C 0.065 3.935 23 F -0.122 7.122 24 C -0.084 4.084 25 C -0.029 4.029 26 H 0.082 0.918 27 H 0.239 0.761 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.079 0.921 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.765 -14.113 -7.502 16.420 hybrid contribution 0.294 1.671 -0.089 1.699 sum -3.471 -12.442 -7.590 14.982 Atomic orbital electron populations 1.69562 1.06059 1.28044 1.49744 1.25082 0.95019 0.99817 0.93259 0.86390 0.79787 0.82348 0.78333 1.20368 1.20945 1.19641 1.21506 0.93716 0.90132 1.52407 0.91460 1.19622 0.85734 0.91692 0.82105 1.86056 1.51055 1.53026 1.49301 1.22635 0.97899 0.94875 1.00255 1.22036 0.89548 0.96421 0.94020 1.48747 1.28457 1.09735 1.46167 1.18068 0.81171 0.87968 0.79954 1.90858 1.39084 1.67954 1.44091 1.23233 1.00846 0.94498 1.02069 1.22250 0.93049 0.98991 0.92440 1.18643 0.93691 0.96107 0.95258 1.21191 0.93417 1.00507 0.98059 1.20743 0.99674 0.96118 0.96103 1.21120 0.92881 1.00410 1.02216 1.17488 0.91161 0.90792 0.94025 1.91482 1.81475 1.63201 1.76085 1.21077 1.00824 0.93707 0.92778 1.23331 1.02574 0.76549 1.00445 0.91840 0.76148 0.90648 0.90457 0.92095 0.92610 0.84998 0.84454 0.85629 0.85418 0.85333 0.85642 0.92134 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.00 10.72 55.43 0.59 -23.41 16 2 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -13.96 8.25 -34.44 -0.28 -14.24 16 8 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 9 C 0.25 5.99 0.89 -89.50 -0.08 5.91 16 10 O -0.58 -14.97 13.19 -35.23 -0.46 -15.44 16 11 C -0.12 -2.30 6.12 -24.90 -0.15 -2.45 16 12 C 0.10 1.75 6.07 -3.07 -0.02 1.73 16 13 N -0.60 -12.11 3.32 -172.01 -0.57 -12.68 16 14 C 0.54 10.37 6.77 -12.96 -0.09 10.29 16 15 O -0.54 -12.03 12.38 5.20 0.06 -11.96 16 16 C -0.19 -2.61 9.41 -37.50 -0.35 -2.96 16 17 C -0.05 -0.58 9.81 -37.16 -0.36 -0.94 16 18 C -0.04 -0.53 4.57 -105.07 -0.48 -1.01 16 19 C -0.11 -1.40 9.79 -39.10 -0.38 -1.78 16 20 C -0.11 -1.29 10.03 -39.66 -0.40 -1.68 16 21 C -0.15 -2.00 10.02 -39.40 -0.39 -2.39 16 22 C 0.08 1.38 7.29 -39.48 -0.29 1.09 16 23 F -0.14 -2.50 17.26 2.25 0.04 -2.46 16 24 C -0.06 -1.07 6.56 -39.04 -0.26 -1.32 16 25 C 0.09 2.21 5.64 -2.40 -0.01 2.20 16 26 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 27 H 0.39 10.33 6.93 45.56 0.32 10.64 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.08 1.41 8.01 -51.93 -0.42 0.99 16 30 H 0.06 0.96 8.12 -51.92 -0.42 0.54 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.13 1.48 7.38 -52.49 -0.39 1.09 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.13 2.18 6.93 -52.49 -0.36 1.81 16 38 H 0.06 1.49 8.04 -51.93 -0.42 1.07 16 39 H 0.08 2.25 7.64 -51.93 -0.40 1.85 16 LS Contribution 331.91 15.07 5.00 5.00 Total: -1.00 -30.27 331.91 -8.17 -38.45 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -4.17 Total: 12.97 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -3.65 Total: -5.81 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.02 Total: -36.09 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.40 Total: -27.40 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.27 -8.17 -38.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014257.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.324 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds