Wall clock time and date at job start Tue Mar 31 2020 08:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86795 * 119.99775 * 2 1 4 4 H 1.48498 * 109.47024 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47474 * 299.99821 * 3 2 1 6 6 H 1.48495 * 109.47394 * 59.99900 * 3 2 1 7 7 C 1.39890 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00091 * 197.51913 * 7 2 1 9 9 C 1.41004 * 120.00340 * 17.51501 * 7 2 1 10 10 C 1.40746 * 120.31143 * 25.12873 * 9 7 2 11 11 C 1.36417 * 119.95717 * 179.97438 * 10 9 7 12 12 C 1.38941 * 120.60842 * 0.02562 * 11 10 9 13 13 C 1.38104 * 120.63293 * 359.97438 * 12 11 10 14 14 C 1.38825 * 120.02290 * 359.97438 * 13 12 11 15 15 N 1.38652 * 120.29640 * 179.97438 * 14 13 12 16 16 C 1.39564 * 119.99640 * 253.79075 * 15 14 13 17 17 C 1.40068 * 119.66768 * 6.41525 * 16 15 14 18 18 C 1.35885 * 120.90498 * 179.76826 * 17 16 15 19 19 C 1.40655 * 119.92229 * 0.48688 * 18 17 16 20 20 C 1.40464 * 121.07831 * 179.75527 * 19 18 17 21 21 C 1.36578 * 119.66653 * 180.02562 * 20 19 18 22 22 O 1.35905 * 119.55995 * 180.02562 * 21 20 19 23 23 C 1.39824 * 120.87473 * 0.02562 * 21 20 19 24 24 C 1.35993 * 120.91445 * 359.97438 * 23 21 20 25 25 C 1.40647 * 119.73624 * 0.02562 * 24 23 21 26 26 C 1.37825 * 119.66676 * 186.68873 * 16 15 14 27 27 H 0.97001 * 119.99912 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.02092 * 0.24914 * 10 9 7 29 29 H 1.07996 * 119.69843 * 179.97438 * 11 10 9 30 30 H 1.08003 * 119.68113 * 179.97438 * 12 11 10 31 31 H 1.08005 * 119.98430 * 180.02562 * 13 12 11 32 32 H 0.96998 * 120.00045 * 73.79595 * 15 14 13 33 33 H 1.07998 * 119.55096 * 0.02562 * 17 16 15 34 34 H 1.08000 * 120.04203 * 180.25950 * 18 17 16 35 35 H 1.08004 * 120.16726 * 0.04293 * 20 19 18 36 36 H 0.96693 * 114.00325 * 90.00810 * 22 21 20 37 37 H 1.08009 * 119.54270 * 180.02562 * 23 21 20 38 38 H 1.08006 * 120.13709 * 180.02562 * 24 23 21 39 39 H 1.08008 * 120.24546 * 359.95363 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3464 -0.0006 5 1 1.8842 2.3965 -1.2125 6 1 1.8841 2.3965 1.2124 7 6 2.0084 -1.2115 -0.0005 8 1 3.0509 -1.2334 0.2810 9 6 1.3525 -2.4042 -0.3686 10 6 0.2259 -2.3644 -1.2113 11 6 -0.4029 -3.5227 -1.5632 12 6 0.0579 -4.7477 -1.0967 13 6 1.1610 -4.8155 -0.2686 14 6 1.8215 -3.6531 0.1052 15 7 2.9293 -3.7146 0.9368 16 6 2.8240 -3.3152 2.2699 17 6 1.5697 -2.9820 2.7969 18 6 1.4377 -2.5944 4.0926 19 6 2.5722 -2.5143 4.9201 20 6 2.4643 -2.1117 6.2615 21 6 3.5851 -2.0435 7.0390 22 8 3.4782 -1.6542 8.3367 23 6 4.8410 -2.3690 6.5176 24 6 4.9796 -2.7623 5.2232 25 6 3.8466 -2.8437 4.3938 26 6 3.9561 -3.2471 3.0531 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1379 -1.4177 -1.5827 29 1 -1.2672 -3.4873 -2.2097 30 1 -0.4516 -5.6555 -1.3844 31 1 1.5104 -5.7734 0.0877 32 1 3.7773 -4.0351 0.5920 33 1 0.6950 -3.0378 2.1659 34 1 0.4632 -2.3446 4.4856 35 1 1.4999 -1.8575 6.6760 36 1 3.3302 -2.3827 8.9550 37 1 5.7131 -2.3079 7.1519 38 1 5.9557 -3.0112 4.8336 39 1 4.9204 -3.5021 2.6387 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176388127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:21 Heat of formation + Delta-G solvation = 21.024369 kcal Electronic energy + Delta-G solvation = -23691.228286 eV Core-core repulsion = 20334.922216 eV Total energy + Delta-G solvation = -3356.306069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.05749 -38.57624 -37.46582 -35.56591 -33.83528 -33.47147 -31.75015 -29.72850 -29.20071 -28.87094 -26.80321 -25.11956 -23.07163 -22.17923 -21.62313 -21.08552 -20.22231 -18.41178 -17.44195 -16.87252 -16.67327 -16.07819 -15.45910 -15.10183 -14.81330 -14.35309 -14.21890 -13.90241 -13.66873 -13.03665 -12.87751 -12.80518 -12.69478 -12.51245 -12.12472 -11.71655 -11.36832 -11.25477 -11.19642 -11.05806 -10.93907 -10.74382 -10.52853 -10.13202 -10.00889 -9.76664 -9.56645 -9.29434 -8.75885 -7.77222 -7.58529 -7.51489 -6.93837 -6.46054 -4.49250 1.00778 1.52690 2.53497 2.63164 2.81005 3.02914 3.07638 3.13719 3.43174 3.85399 4.32136 4.40372 4.51026 4.67038 5.02155 5.20638 5.47391 5.49118 5.58742 5.69055 5.80094 5.94084 6.08736 6.10953 6.20443 6.28211 6.36253 6.49631 6.60094 6.67336 6.76006 6.92537 6.97413 7.03763 7.04803 7.16200 7.17714 7.28601 7.43284 7.61762 7.79609 7.85415 7.95612 8.10189 8.25635 8.42226 8.61302 8.72380 8.92912 10.01995 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013871 B = 0.004853 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.083384 B = 5767.841184 C = 6854.811318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.079 3.921 3 Si 0.903 3.097 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.439 4.439 8 H 0.079 0.921 9 C 0.115 3.885 10 C -0.156 4.156 11 C -0.102 4.102 12 C -0.241 4.241 13 C -0.084 4.084 14 C -0.012 4.012 15 N -0.658 5.658 16 C 0.257 3.743 17 C -0.118 4.118 18 C -0.082 4.082 19 C -0.090 4.090 20 C -0.109 4.109 21 C 0.061 3.939 22 O -0.503 6.503 23 C -0.136 4.136 24 C -0.110 4.110 25 C -0.002 4.002 26 C -0.237 4.237 27 H 0.282 0.718 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.391 0.609 33 H 0.133 0.867 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.379 0.621 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.438 -4.124 7.696 9.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.468 4.468 8 H 0.098 0.902 9 C 0.111 3.889 10 C -0.176 4.176 11 C -0.121 4.121 12 C -0.261 4.261 13 C -0.104 4.104 14 C -0.106 4.106 15 N -0.276 5.276 16 C 0.151 3.849 17 C -0.139 4.139 18 C -0.101 4.101 19 C -0.091 4.091 20 C -0.127 4.127 21 C 0.016 3.984 22 O -0.312 6.312 23 C -0.154 4.154 24 C -0.129 4.129 25 C -0.003 4.003 26 C -0.262 4.262 27 H 0.093 0.907 28 H 0.137 0.863 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.226 0.774 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.233 0.767 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.134 -3.377 7.331 9.068 hybrid contribution 0.507 0.320 0.044 0.602 sum 4.642 -3.056 7.375 9.234 Atomic orbital electron populations 1.69842 1.07542 1.29452 1.33975 1.25909 0.94704 1.01426 0.91999 0.86324 0.81244 0.81037 0.78718 1.18293 1.19608 1.19723 1.19456 0.98097 0.90801 1.38415 0.90243 1.17786 0.91226 0.91453 0.88485 1.21016 0.98893 0.97131 1.00520 1.20483 0.98660 0.93282 0.99642 1.20209 1.01390 0.96290 1.08179 1.20720 0.95410 0.95909 0.98374 1.17306 0.96313 0.93285 1.03697 1.41321 1.11269 1.68859 1.06200 1.17942 0.93053 0.89539 0.84355 1.20700 0.97177 1.00771 0.95215 1.20749 0.97216 0.98745 0.93420 1.17737 0.93383 1.04419 0.93568 1.21162 0.98059 0.99748 0.93756 1.17933 0.92488 1.03265 0.84681 1.84861 1.94866 1.36466 1.15028 1.20919 0.96817 1.01232 0.96445 1.20773 0.97763 1.01092 0.93250 1.17690 0.92276 0.97078 0.93265 1.20308 0.96880 1.15211 0.93833 0.90694 0.86317 0.89368 0.89308 0.89212 0.77427 0.84953 0.86081 0.85857 0.76707 0.86383 0.85968 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.09 10.98 55.55 0.61 -18.48 16 2 C 0.08 1.89 5.14 -17.33 -0.09 1.80 16 3 Si 0.90 18.54 29.59 -169.99 -5.03 13.51 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.44 -10.84 7.95 -37.92 -0.30 -11.14 16 8 H 0.08 1.99 7.57 -52.48 -0.40 1.59 16 9 C 0.11 2.78 5.01 -106.63 -0.53 2.25 16 10 C -0.16 -3.76 8.63 -39.29 -0.34 -4.10 16 11 C -0.10 -2.24 9.96 -39.98 -0.40 -2.63 16 12 C -0.24 -5.02 10.03 -39.37 -0.40 -5.42 16 13 C -0.08 -1.76 9.96 -39.41 -0.39 -2.15 16 14 C -0.01 -0.27 4.59 -83.29 -0.38 -0.65 16 15 N -0.66 -12.77 4.72 -8.06 -0.04 -12.81 16 16 C 0.26 5.00 6.01 -83.80 -0.50 4.50 16 17 C -0.12 -2.39 8.81 -39.74 -0.35 -2.74 16 18 C -0.08 -1.49 9.74 -39.51 -0.38 -1.88 16 19 C -0.09 -1.57 5.74 -106.80 -0.61 -2.18 16 20 C -0.11 -1.69 9.67 -39.34 -0.38 -2.08 16 21 C 0.06 0.89 6.65 -39.59 -0.26 0.63 16 22 O -0.50 -6.42 13.47 -19.44 -0.26 -6.68 16 23 C -0.14 -1.90 9.88 -39.79 -0.39 -2.29 16 24 C -0.11 -1.62 9.76 -39.48 -0.39 -2.01 16 25 C 0.00 -0.04 5.74 -106.82 -0.61 -0.65 16 26 C -0.24 -4.16 9.63 -38.91 -0.37 -4.54 16 27 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 28 H 0.12 2.97 6.20 -52.48 -0.33 2.65 16 29 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.09 1.65 8.06 -52.48 -0.42 1.22 16 31 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.39 6.64 8.82 -40.82 -0.36 6.28 16 33 H 0.13 2.98 6.67 -52.49 -0.35 2.63 16 34 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 36 H 0.38 2.89 9.06 45.56 0.41 3.30 16 37 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 39 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -27.19 334.09 -10.32 -37.50 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -3.54 Total: 17.22 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: -7.09 Total: -35.29 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 0.57 Total: -31.29 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.26 Total: -6.68 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.19 -10.32 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176388127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.528 kcal (2) G-P(sol) polarization free energy of solvation -27.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds