Wall clock time and date at job start Tue Mar 31 2020 08:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86795 * 119.99775 * 2 1 4 4 H 1.48498 * 109.47024 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47474 * 299.99821 * 3 2 1 6 6 H 1.48495 * 109.47394 * 59.99900 * 3 2 1 7 7 C 1.39890 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00091 * 197.51913 * 7 2 1 9 9 C 1.41004 * 120.00340 * 17.51501 * 7 2 1 10 10 C 1.40746 * 120.31143 * 25.12873 * 9 7 2 11 11 C 1.36417 * 119.95717 * 179.97438 * 10 9 7 12 12 C 1.38941 * 120.60842 * 0.02562 * 11 10 9 13 13 C 1.38104 * 120.63293 * 359.97438 * 12 11 10 14 14 C 1.38825 * 120.02290 * 359.97438 * 13 12 11 15 15 N 1.38652 * 120.29640 * 179.97438 * 14 13 12 16 16 C 1.39564 * 119.99640 * 253.79075 * 15 14 13 17 17 C 1.40068 * 119.66768 * 6.41525 * 16 15 14 18 18 C 1.35885 * 120.90498 * 179.76826 * 17 16 15 19 19 C 1.40655 * 119.92229 * 0.48688 * 18 17 16 20 20 C 1.40464 * 121.07831 * 179.75527 * 19 18 17 21 21 C 1.36578 * 119.66653 * 180.02562 * 20 19 18 22 22 O 1.35905 * 119.55995 * 180.02562 * 21 20 19 23 23 C 1.39824 * 120.87473 * 0.02562 * 21 20 19 24 24 C 1.35993 * 120.91445 * 359.97438 * 23 21 20 25 25 C 1.40647 * 119.73624 * 0.02562 * 24 23 21 26 26 C 1.37825 * 119.66676 * 186.68873 * 16 15 14 27 27 H 0.97001 * 119.99912 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.02092 * 0.24914 * 10 9 7 29 29 H 1.07996 * 119.69843 * 179.97438 * 11 10 9 30 30 H 1.08003 * 119.68113 * 179.97438 * 12 11 10 31 31 H 1.08005 * 119.98430 * 180.02562 * 13 12 11 32 32 H 0.96998 * 120.00045 * 73.79595 * 15 14 13 33 33 H 1.07998 * 119.55096 * 0.02562 * 17 16 15 34 34 H 1.08000 * 120.04203 * 180.25950 * 18 17 16 35 35 H 1.08004 * 120.16726 * 0.04293 * 20 19 18 36 36 H 0.96693 * 114.00325 * 90.00810 * 22 21 20 37 37 H 1.08009 * 119.54270 * 180.02562 * 23 21 20 38 38 H 1.08006 * 120.13709 * 180.02562 * 24 23 21 39 39 H 1.08008 * 120.24546 * 359.95363 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3464 -0.0006 5 1 1.8842 2.3965 -1.2125 6 1 1.8841 2.3965 1.2124 7 6 2.0084 -1.2115 -0.0005 8 1 3.0509 -1.2334 0.2810 9 6 1.3525 -2.4042 -0.3686 10 6 0.2259 -2.3644 -1.2113 11 6 -0.4029 -3.5227 -1.5632 12 6 0.0579 -4.7477 -1.0967 13 6 1.1610 -4.8155 -0.2686 14 6 1.8215 -3.6531 0.1052 15 7 2.9293 -3.7146 0.9368 16 6 2.8240 -3.3152 2.2699 17 6 1.5697 -2.9820 2.7969 18 6 1.4377 -2.5944 4.0926 19 6 2.5722 -2.5143 4.9201 20 6 2.4643 -2.1117 6.2615 21 6 3.5851 -2.0435 7.0390 22 8 3.4782 -1.6542 8.3367 23 6 4.8410 -2.3690 6.5176 24 6 4.9796 -2.7623 5.2232 25 6 3.8466 -2.8437 4.3938 26 6 3.9561 -3.2471 3.0531 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1379 -1.4177 -1.5827 29 1 -1.2672 -3.4873 -2.2097 30 1 -0.4516 -5.6555 -1.3844 31 1 1.5104 -5.7734 0.0877 32 1 3.7773 -4.0351 0.5920 33 1 0.6950 -3.0378 2.1659 34 1 0.4632 -2.3446 4.4856 35 1 1.4999 -1.8575 6.6760 36 1 3.3302 -2.3827 8.9550 37 1 5.7131 -2.3079 7.1519 38 1 5.9557 -3.0112 4.8336 39 1 4.9204 -3.5021 2.6387 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176388127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:20 Heat of formation + Delta-G solvation = 7.475435 kcal Electronic energy + Delta-G solvation = -23691.815812 eV Core-core repulsion = 20334.922216 eV Total energy + Delta-G solvation = -3356.893595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.34645 -40.06070 -38.79825 -36.92431 -35.57970 -34.85621 -33.07534 -31.48562 -30.50315 -30.39560 -28.27278 -26.84037 -24.37453 -23.53374 -22.97416 -22.77426 -21.79851 -19.58793 -19.19026 -18.26912 -18.11218 -17.42544 -17.04888 -16.50708 -16.06117 -15.90384 -15.58331 -15.53920 -14.99556 -14.46683 -14.34610 -14.18650 -14.14713 -14.03894 -13.50586 -13.25858 -13.04748 -12.86795 -12.72094 -12.50242 -12.43495 -12.18447 -12.03227 -11.58544 -11.50733 -11.27509 -11.07284 -10.95245 -10.09497 -9.34943 -9.30027 -9.01145 -8.67695 -7.88340 -6.31582 -0.26140 0.25191 0.90334 1.05946 1.25846 1.33462 1.44319 1.47409 2.15652 2.16322 2.71303 2.88412 3.26501 3.43685 3.70357 3.80961 4.04954 4.22424 4.40083 4.42145 4.46429 4.52835 4.54283 4.60149 4.81064 4.93684 4.96911 5.12061 5.13809 5.28058 5.31765 5.37750 5.43565 5.52435 5.55152 5.66046 5.70265 5.86959 5.96331 6.05120 6.07520 6.18863 6.34995 6.54569 6.82796 6.90379 6.96457 7.00983 7.28416 8.28197 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013871 B = 0.004853 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.083384 B = 5767.841184 C = 6854.811318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.043 3.957 3 Si 0.960 3.040 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.272 1.272 7 C -0.461 4.461 8 H 0.067 0.933 9 C 0.090 3.910 10 C -0.182 4.182 11 C -0.108 4.108 12 C -0.235 4.235 13 C -0.093 4.093 14 C -0.001 4.001 15 N -0.662 5.662 16 C 0.234 3.766 17 C -0.143 4.143 18 C -0.085 4.085 19 C -0.102 4.102 20 C -0.127 4.127 21 C 0.074 3.926 22 O -0.509 6.509 23 C -0.132 4.132 24 C -0.108 4.108 25 C -0.023 4.023 26 C -0.226 4.226 27 H 0.287 0.713 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.401 0.599 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.405 0.595 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.274 -4.718 9.590 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.173 4.173 3 Si 0.782 3.218 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.197 1.197 7 C -0.490 4.490 8 H 0.086 0.914 9 C 0.086 3.914 10 C -0.202 4.202 11 C -0.127 4.127 12 C -0.255 4.255 13 C -0.112 4.112 14 C -0.095 4.095 15 N -0.283 5.283 16 C 0.129 3.871 17 C -0.163 4.163 18 C -0.103 4.103 19 C -0.103 4.103 20 C -0.146 4.146 21 C 0.030 3.970 22 O -0.322 6.322 23 C -0.151 4.151 24 C -0.127 4.127 25 C -0.024 4.024 26 C -0.251 4.251 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.238 0.762 33 H 0.116 0.884 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.263 0.737 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.974 -3.993 9.256 11.718 hybrid contribution -0.024 0.389 -0.303 0.493 sum 5.950 -3.604 8.953 11.338 Atomic orbital electron populations 1.69888 1.08523 1.30249 1.35349 1.26524 0.95317 1.03824 0.91593 0.85469 0.79725 0.77714 0.78860 1.18623 1.18548 1.19717 1.19440 0.97657 0.91840 1.40103 0.91441 1.18065 0.91811 0.92523 0.89037 1.20999 1.00028 0.97304 1.01872 1.20739 0.99088 0.93066 0.99769 1.20585 1.01012 0.96912 1.06966 1.21034 0.95348 0.96590 0.98266 1.17438 0.96463 0.92867 1.02727 1.41188 1.11094 1.69893 1.06154 1.18005 0.93412 0.91152 0.84504 1.20507 0.96611 1.03430 0.95790 1.20911 0.98377 0.98116 0.92939 1.17914 0.93265 1.04731 0.94388 1.21295 0.99355 1.00736 0.93166 1.18078 0.92420 1.01080 0.85439 1.84790 1.94806 1.38051 1.14512 1.21274 0.97553 0.99751 0.96474 1.21066 0.98025 1.00336 0.93229 1.18000 0.93184 0.97613 0.93565 1.20583 0.97056 1.13530 0.93898 0.90262 0.88141 0.87328 0.86370 0.86907 0.76195 0.88362 0.85064 0.84745 0.73665 0.83365 0.83220 0.84219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.57 10.98 21.82 0.24 -41.33 16 2 C 0.04 2.16 5.14 85.23 0.44 2.60 16 3 Si 0.96 39.07 29.59 68.60 2.03 41.10 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.46 -23.81 7.95 23.35 0.19 -23.62 16 8 H 0.07 3.53 7.57 -2.91 -0.02 3.50 16 9 C 0.09 4.53 5.01 -21.17 -0.11 4.42 16 10 C -0.18 -9.14 8.63 22.46 0.19 -8.95 16 11 C -0.11 -4.78 9.96 22.01 0.22 -4.56 16 12 C -0.24 -9.59 10.03 22.41 0.22 -9.36 16 13 C -0.09 -3.82 9.96 22.38 0.22 -3.60 16 14 C 0.00 -0.03 4.59 39.03 0.18 0.15 16 15 N -0.66 -26.09 4.72 -179.41 -0.85 -26.94 16 16 C 0.23 9.24 6.01 38.26 0.23 9.47 16 17 C -0.14 -6.04 8.81 22.17 0.20 -5.84 16 18 C -0.08 -3.16 9.74 22.31 0.22 -2.94 16 19 C -0.10 -3.49 5.74 -21.28 -0.12 -3.61 16 20 C -0.13 -3.74 9.67 22.42 0.22 -3.52 16 21 C 0.07 1.94 6.65 22.27 0.15 2.09 16 22 O -0.51 -11.05 13.47 -92.48 -1.25 -12.30 16 23 C -0.13 -3.17 9.88 22.13 0.22 -2.95 16 24 C -0.11 -2.83 9.76 22.34 0.22 -2.61 16 25 C -0.02 -0.75 5.74 -21.29 -0.12 -0.87 16 26 C -0.23 -7.72 9.63 22.71 0.22 -7.50 16 27 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 28 H 0.10 5.33 6.20 -2.91 -0.02 5.31 16 29 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 30 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 31 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 32 H 0.40 13.64 8.82 -92.71 -0.82 12.82 16 33 H 0.10 4.76 6.67 -2.91 -0.02 4.74 16 34 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 35 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.41 4.52 9.06 -74.06 -0.67 3.85 16 37 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 38 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -60.35 334.09 2.77 -57.58 By element: Atomic # 1 Polarization: 43.50 SS G_CDS: -0.38 Total: 43.12 kcal Atomic # 6 Polarization: -64.20 SS G_CDS: 2.98 Total: -61.22 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -0.61 Total: -68.27 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -1.25 Total: -12.30 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -60.35 2.77 -57.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176388127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.053 kcal (2) G-P(sol) polarization free energy of solvation -60.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds