Wall clock time and date at job start Tue Mar 31 2020 09:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39289 * 119.48060 * 2 1 4 4 C 1.36275 * 120.81798 * 179.97438 * 3 2 1 5 5 C 1.40090 * 119.63581 * 0.04538 * 4 3 2 6 6 C 1.41579 * 119.72920 * 359.95126 * 5 4 3 7 7 C 1.36118 * 119.48309 * 180.02562 * 2 1 3 8 8 N 1.33698 * 119.99404 * 180.02562 * 6 5 4 9 9 C 1.31210 * 121.78539 * 0.02562 * 8 6 5 10 10 C 1.38898 * 121.89489 * 359.67950 * 9 8 6 11 11 C 1.38977 * 119.62144 * 0.61841 * 10 9 8 12 12 C 1.47974 * 121.09912 * 179.69367 * 11 10 9 13 13 C 1.39614 * 120.06699 * 309.72016 * 12 11 10 14 14 C 1.37754 * 119.93463 * 179.97438 * 13 12 11 15 15 C 1.39063 * 120.06448 * 0.02562 * 14 13 12 16 16 O 1.35652 * 119.92890 * 179.71807 * 15 14 13 17 17 C 1.34804 * 117.00469 * 354.44988 * 16 15 14 18 18 H 1.07999 * 120.00123 * 5.03971 * 17 16 15 19 19 C 1.38674 * 120.00025 * 185.04489 * 17 16 15 20 20 N 1.31537 * 120.00074 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99683 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47643 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46868 * 120.00128 * 21 19 17 24 24 H 1.48500 * 109.46975 * 239.99662 * 21 19 17 25 25 C 1.39051 * 120.13442 * 0.02562 * 15 14 13 26 26 C 1.37761 * 120.06934 * 359.97438 * 25 15 14 27 27 H 1.08996 * 109.47050 * 269.98193 * 1 2 3 28 28 H 1.09003 * 109.46735 * 29.98249 * 1 2 3 29 29 H 1.08996 * 109.46818 * 149.97773 * 1 2 3 30 30 H 1.08005 * 119.59095 * 0.04215 * 3 2 1 31 31 H 1.07995 * 120.18106 * 179.97438 * 4 3 2 32 32 H 1.07995 * 120.12080 * 0.02562 * 7 2 1 33 33 H 1.08006 * 119.05055 * 179.97438 * 9 8 6 34 34 H 1.08003 * 120.19104 * 180.31885 * 10 9 8 35 35 H 1.08000 * 120.03014 * 359.95920 * 13 12 11 36 36 H 1.08006 * 119.96795 * 180.02562 * 14 13 12 37 37 H 0.96998 * 120.00189 * 179.97438 * 20 19 17 38 38 H 1.08005 * 119.96789 * 179.97438 * 25 15 14 39 39 H 1.07993 * 120.04056 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1925 1.2125 0.0000 4 6 3.5549 1.2443 0.0005 5 6 4.2759 0.0432 0.0001 6 6 3.5831 -1.1915 0.0002 7 6 2.1770 -1.1849 -0.0005 8 7 4.2658 -2.3410 0.0003 9 6 5.5777 -2.3657 0.0008 10 6 6.3336 -1.2004 -0.0053 11 6 5.6940 0.0334 0.0009 12 6 6.4670 1.2951 0.0014 13 6 7.4946 1.4855 0.9272 14 6 8.2129 2.6609 0.9250 15 6 7.9150 3.6576 0.0020 16 8 8.6203 4.8163 0.0060 17 6 9.5156 4.9846 0.9997 18 1 9.7039 4.1829 1.6984 19 6 10.1947 6.1872 1.1248 20 7 9.9657 7.1635 0.2736 21 14 11.4347 6.4205 2.5022 22 1 11.5086 5.1813 3.3170 23 1 12.7704 6.7112 1.9218 24 1 11.0114 7.5546 3.3624 25 6 6.8915 3.4714 -0.9206 26 6 6.1696 2.2981 -0.9233 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6374 2.1390 0.0007 31 1 4.0759 2.1903 0.0001 32 1 1.6306 -2.1164 -0.0014 33 1 6.0843 -3.3195 0.0013 34 1 7.4124 -1.2528 -0.0098 35 1 7.7258 0.7120 1.6446 36 1 9.0081 2.8086 1.6407 37 1 10.4404 8.0048 0.3614 38 1 6.6622 4.2474 -1.6359 39 1 5.3746 2.1541 -1.6398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243595310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:21 Heat of formation + Delta-G solvation = 27.482010 kcal Electronic energy + Delta-G solvation = -22919.633565 eV Core-core repulsion = 19563.607520 eV Total energy + Delta-G solvation = -3356.026045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90292 -40.72578 -38.60292 -38.16169 -34.95811 -34.18114 -32.94949 -31.93334 -31.35747 -29.74823 -28.09432 -27.42593 -25.06140 -24.13944 -23.43411 -23.06980 -21.78672 -19.95890 -19.00444 -18.75031 -17.81919 -17.72067 -16.43676 -16.29182 -15.98988 -15.62259 -15.49295 -15.35506 -15.28461 -14.97470 -14.80375 -14.45539 -14.23167 -14.08771 -13.87316 -13.59304 -13.10364 -13.02467 -12.72725 -12.65791 -12.49072 -12.32766 -12.28775 -12.15221 -12.10368 -11.39965 -11.15667 -10.80400 -10.46496 -9.91644 -9.60714 -9.33289 -8.75034 -8.51392 -6.18742 -0.67520 -0.11454 0.43133 0.50871 1.11684 1.35713 1.43540 1.53574 1.98708 2.15110 2.72915 3.06928 3.16363 3.34772 3.41199 3.51664 3.79942 3.85733 3.93223 4.02492 4.10301 4.16036 4.25704 4.40639 4.44845 4.59658 4.63529 4.65030 4.75830 4.86886 4.91979 5.02146 5.03377 5.12959 5.14630 5.18317 5.24551 5.43181 5.45333 5.57764 5.60715 5.64467 5.69052 5.95033 5.97396 6.04259 6.93229 6.97065 7.70450 8.71238 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.003049 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.801272 B = 9180.165820 C = 9907.254117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.063 4.063 3 C -0.121 4.121 4 C -0.104 4.104 5 C -0.119 4.119 6 C 0.115 3.885 7 C -0.117 4.117 8 N -0.508 5.508 9 C 0.137 3.863 10 C -0.183 4.183 11 C 0.034 3.966 12 C -0.145 4.145 13 C -0.041 4.041 14 C -0.239 4.239 15 C 0.129 3.871 16 O -0.222 6.222 17 C -0.415 4.415 18 H 0.106 0.894 19 C -0.019 4.019 20 N -0.916 5.916 21 Si 1.018 2.982 22 H -0.250 1.250 23 H -0.269 1.269 24 H -0.269 1.269 25 C -0.199 4.199 26 C -0.044 4.044 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.149 0.851 31 H 0.130 0.870 32 H 0.144 0.856 33 H 0.192 0.808 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.127 0.873 37 H 0.274 0.726 38 H 0.121 0.879 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.597 -16.093 1.112 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.122 4.122 5 C -0.121 4.121 6 C -0.006 4.006 7 C -0.136 4.136 8 N -0.217 5.217 9 C -0.033 4.033 10 C -0.203 4.203 11 C 0.026 3.974 12 C -0.145 4.145 13 C -0.059 4.059 14 C -0.258 4.258 15 C 0.077 3.923 16 O -0.128 6.128 17 C -0.491 4.491 18 H 0.123 0.877 19 C -0.218 4.218 20 N -0.553 5.553 21 Si 0.837 3.163 22 H -0.173 1.173 23 H -0.194 1.194 24 H -0.194 1.194 25 C -0.218 4.218 26 C -0.062 4.062 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.166 0.834 31 H 0.147 0.853 32 H 0.162 0.838 33 H 0.209 0.791 34 H 0.173 0.827 35 H 0.159 0.841 36 H 0.145 0.855 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.112 -16.434 0.915 21.680 hybrid contribution 1.449 1.400 0.361 2.047 sum -12.662 -15.034 1.276 19.697 Atomic orbital electron populations 1.20918 0.88231 1.04221 1.03606 1.20022 0.98197 0.91997 0.96288 1.21172 0.93745 0.98980 0.99973 1.21276 0.95140 0.97209 0.98586 1.18989 0.93436 0.95213 1.04418 1.19106 0.95056 0.87857 0.98565 1.20818 0.90878 0.99299 1.02564 1.67993 1.10281 1.28510 1.14938 1.23324 0.88960 0.99402 0.91655 1.22474 1.02578 0.91778 1.03443 1.19252 0.91459 0.93198 0.93495 1.18336 1.00441 0.94567 1.01188 1.21046 0.92438 0.95779 0.96674 1.21186 1.05401 0.95579 1.03644 1.20006 0.91015 0.86778 0.94478 1.83918 1.47761 1.33417 1.47705 1.21911 1.17778 1.01621 1.07747 0.87698 1.26590 1.00348 0.93654 1.01177 1.70169 1.42466 1.05140 1.37555 0.84534 0.76287 0.79432 0.76027 1.17310 1.19354 1.19405 1.20337 0.98530 1.00309 1.02636 1.20937 0.97390 0.90741 0.97124 0.89776 0.89983 0.90240 0.83370 0.85253 0.83820 0.79141 0.82745 0.84065 0.85517 0.91673 0.86087 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.98 71.24 0.71 -0.64 16 2 C -0.06 -1.23 5.84 -20.10 -0.12 -1.35 16 3 C -0.12 -2.58 9.60 22.06 0.21 -2.37 16 4 C -0.10 -2.74 8.65 22.26 0.19 -2.55 16 5 C -0.12 -3.41 5.74 -21.12 -0.12 -3.53 16 6 C 0.12 3.20 6.61 40.26 0.27 3.46 16 7 C -0.12 -2.68 9.58 22.36 0.21 -2.47 16 8 N -0.51 -13.62 10.32 -188.96 -1.95 -15.57 16 9 C 0.14 3.04 11.13 84.94 0.95 3.99 16 10 C -0.18 -4.39 9.62 22.61 0.22 -4.17 16 11 C 0.03 0.98 5.52 -19.64 -0.11 0.87 16 12 C -0.14 -4.67 5.10 -20.03 -0.10 -4.78 16 13 C -0.04 -1.39 9.55 22.49 0.21 -1.18 16 14 C -0.24 -9.92 9.15 22.35 0.20 -9.71 16 15 C 0.13 6.14 6.65 22.66 0.15 6.29 16 16 O -0.22 -12.89 9.75 -21.39 -0.21 -13.09 16 17 C -0.41 -23.26 9.48 67.92 0.64 -22.61 16 18 H 0.11 5.36 5.19 -2.91 -0.02 5.35 16 19 C -0.02 -1.06 5.49 84.84 0.47 -0.60 16 20 N -0.92 -54.69 13.67 21.62 0.30 -54.39 16 21 Si 1.02 41.44 29.55 68.60 2.03 43.46 16 22 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 23 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 24 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 25 C -0.20 -8.13 9.98 22.35 0.22 -7.90 16 26 C -0.04 -1.47 7.68 22.49 0.17 -1.30 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 29 H 0.08 0.79 8.07 -2.39 -0.02 0.77 16 30 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.13 3.56 5.68 -2.91 -0.02 3.54 16 32 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 33 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 36 H 0.13 5.29 5.62 -2.91 -0.02 5.28 16 37 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 38 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.14 4.01 7.29 -2.91 -0.02 3.99 16 Total: -1.00 -69.80 334.68 5.63 -64.17 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 1.08 Total: 25.99 kcal Atomic # 6 Polarization: -54.95 SS G_CDS: 4.38 Total: -50.56 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -1.65 Total: -69.96 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.21 Total: -13.09 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -69.80 5.63 -64.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243595310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.649 kcal (2) G-P(sol) polarization free energy of solvation -69.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds