Wall clock time and date at job start Tue Mar 31 2020 09:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36171 * 119.94975 * 2 1 4 4 C 1.40980 * 119.89529 * 180.02562 * 3 2 1 5 5 C 1.40908 * 120.10093 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00583 * 24.72618 * 5 4 3 7 7 C 1.40033 * 119.99762 * 204.72824 * 5 4 3 8 8 N 1.30787 * 119.99965 * 17.97098 * 7 5 4 9 9 Si 1.86794 * 119.99955 * 197.97167 * 7 5 4 10 10 H 1.48501 * 109.47358 * 59.99804 * 9 7 5 11 11 H 1.48507 * 109.47140 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47060 * 299.99750 * 9 7 5 13 13 C 1.41013 * 119.79458 * 359.97438 * 4 3 2 14 14 C 1.36139 * 119.89078 * 0.02562 * 13 4 3 15 15 C 1.40114 * 119.94278 * 179.71993 * 2 1 3 16 16 C 1.47595 * 119.89924 * 0.02562 * 15 2 1 17 17 C 1.38900 * 120.38425 * 244.99641 * 16 15 2 18 18 C 1.38786 * 120.51468 * 179.97438 * 17 16 15 19 19 C 1.36373 * 121.22288 * 0.02981 * 18 17 16 20 20 C 1.40603 * 120.23260 * 359.95124 * 19 18 17 21 21 N 1.33812 * 120.86245 * 179.97438 * 20 19 18 22 22 C 1.31569 * 121.27052 * 180.02562 * 21 20 19 23 23 O 1.35580 * 119.23178 * 180.02562 * 22 21 20 24 24 C 1.39962 * 121.54403 * 359.97438 * 22 21 20 25 25 C 1.36499 * 119.83020 * 0.02917 * 24 22 21 26 26 C 1.40535 * 118.28461 * 359.74301 * 25 24 22 27 27 H 1.09003 * 109.46648 * 90.00031 * 1 2 3 28 28 H 1.08996 * 109.47117 * 210.00082 * 1 2 3 29 29 H 1.08996 * 109.46685 * 330.00144 * 1 2 3 30 30 H 1.08003 * 120.04956 * 359.97334 * 3 2 1 31 31 H 0.97005 * 119.99934 * 180.02562 * 8 7 5 32 32 H 1.08001 * 120.05532 * 180.02562 * 13 4 3 33 33 H 1.07997 * 119.94738 * 179.97438 * 14 13 4 34 34 H 1.08003 * 119.74630 * 359.97438 * 17 16 15 35 35 H 1.08004 * 119.39202 * 180.02562 * 18 17 16 36 36 H 1.08002 * 119.88265 * 179.97438 * 19 18 17 37 37 H 0.96692 * 114.00247 * 89.99418 * 23 22 21 38 38 H 1.08002 * 120.08494 * 179.97438 * 24 22 21 39 39 H 1.08002 * 120.85747 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.1799 0.0000 4 6 3.5966 1.1785 -0.0005 5 6 4.3045 2.3969 -0.0011 6 1 3.8414 3.2907 0.3901 7 6 5.6085 2.4488 -0.5089 8 7 6.0451 1.4938 -1.2885 9 14 6.7242 3.8820 -0.0728 10 1 6.9103 3.9344 1.3995 11 1 8.0428 3.7012 -0.7318 12 1 6.1070 5.1496 -0.5392 13 6 4.2962 -0.0459 -0.0005 14 6 3.6079 -1.2205 -0.0005 15 6 2.2064 -1.2141 0.0059 16 6 1.4649 -2.4903 0.0116 17 6 1.5494 -3.3471 1.1016 18 6 0.8529 -4.5475 1.1100 19 6 0.0713 -4.9187 0.0559 20 6 -0.0444 -4.0826 -1.0686 21 7 -0.8074 -4.4346 -2.1100 22 6 -0.9211 -3.6587 -3.1665 23 8 -1.7059 -4.0559 -4.1983 24 6 -0.2516 -2.4325 -3.2498 25 6 0.5414 -2.0203 -2.2180 26 6 0.6538 -2.8523 -1.0911 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 1.6468 2.1152 -0.0004 31 1 6.9485 1.5296 -1.6400 32 1 5.3762 -0.0518 -0.0005 33 1 4.1427 -2.1587 -0.0010 34 1 2.1619 -3.0771 1.9492 35 1 0.9314 -5.1999 1.9672 36 1 -0.4610 -5.8580 0.0852 37 1 -2.6259 -3.7672 -4.1264 38 1 -0.3614 -1.8143 -4.1286 39 1 1.0659 -1.0774 -2.2650 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244317536.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:21 Heat of formation + Delta-G solvation = 22.068177 kcal Electronic energy + Delta-G solvation = -23658.975667 eV Core-core repulsion = 20302.714861 eV Total energy + Delta-G solvation = -3356.260806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.73103 -38.52143 -37.52788 -35.59946 -34.45503 -33.05118 -31.37015 -30.81199 -29.54952 -28.75399 -25.97356 -25.33306 -23.75049 -23.22375 -21.86992 -20.45964 -19.76163 -18.90592 -17.56794 -17.08294 -16.86954 -16.02682 -15.46152 -14.90037 -14.51814 -14.41155 -14.17477 -13.80163 -13.46402 -13.27716 -13.11678 -12.69027 -12.54496 -12.09464 -11.97699 -11.79407 -11.68634 -11.51119 -11.26450 -11.16386 -11.09889 -10.90020 -10.70345 -10.55075 -10.13153 -9.86190 -9.55077 -9.27404 -9.20973 -8.44399 -7.91754 -7.56657 -7.27444 -6.95253 -4.51847 0.61313 1.01397 2.18639 2.61441 2.93452 2.96634 2.98052 3.02615 3.12434 3.70495 3.78504 4.31346 4.42253 4.77574 4.94066 5.11809 5.20296 5.33436 5.45239 5.50748 5.61617 5.68434 5.86207 5.91571 6.12214 6.17160 6.18639 6.23714 6.26390 6.37455 6.47342 6.64048 6.69060 6.81417 6.86449 6.93259 7.08655 7.12273 7.20495 7.47502 7.52085 7.75002 7.89329 7.95426 8.05545 8.10783 8.45478 8.69430 8.80083 9.96816 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.003732 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.629142 B = 7500.080629 C = 8030.152588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.034 4.034 3 C -0.227 4.227 4 C 0.122 3.878 5 C -0.452 4.452 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.780 5.780 9 Si 0.910 3.090 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.264 1.264 13 C -0.172 4.172 14 C -0.070 4.070 15 C -0.216 4.216 16 C 0.056 3.944 17 C -0.143 4.143 18 C -0.080 4.080 19 C -0.132 4.132 20 C 0.153 3.847 21 N -0.507 5.507 22 C 0.336 3.664 23 O -0.486 6.486 24 C -0.209 4.209 25 C -0.014 4.014 26 C -0.111 4.111 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.285 0.715 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.398 0.602 38 H 0.138 0.862 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 -5.460 0.397 9.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.035 4.035 3 C -0.247 4.247 4 C 0.119 3.881 5 C -0.480 4.480 6 H 0.099 0.901 7 C -0.144 4.144 8 N -0.404 5.404 9 Si 0.734 3.266 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.188 1.188 13 C -0.192 4.192 14 C -0.088 4.088 15 C -0.218 4.218 16 C 0.055 3.945 17 C -0.161 4.161 18 C -0.100 4.100 19 C -0.151 4.151 20 C 0.032 3.968 21 N -0.226 5.226 22 C 0.143 3.857 23 O -0.293 6.293 24 C -0.230 4.230 25 C -0.039 4.039 26 C -0.113 4.113 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.107 0.893 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.255 0.745 38 H 0.156 0.844 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.078 -6.596 0.097 10.429 hybrid contribution 0.593 1.527 0.048 1.639 sum -7.485 -5.069 0.146 9.041 Atomic orbital electron populations 1.20822 0.93896 1.01131 1.00787 1.19047 0.93260 0.92555 0.98590 1.20520 0.94184 0.95345 1.14646 1.17667 0.90873 0.93178 0.86354 1.19619 0.97627 0.96172 1.34626 0.90142 1.26000 0.98497 0.97411 0.92481 1.69798 1.18051 1.31665 1.20859 0.86328 0.78810 0.81333 0.80141 1.18617 1.20157 1.18816 1.20964 0.99758 0.91299 1.07149 1.20406 0.92099 0.97060 0.99245 1.17774 0.92481 0.89337 1.22167 1.19005 0.91354 0.93506 0.90589 1.21395 1.01504 0.94566 0.98642 1.20781 0.95328 0.96197 0.97701 1.20591 1.01919 0.99927 0.92636 1.18440 0.93699 0.92363 0.92263 1.67458 1.20691 1.33894 1.00564 1.19302 0.92263 0.88426 0.85743 1.84729 1.24689 1.79640 1.40264 1.21800 1.02676 0.97159 1.01347 1.21640 0.92826 0.98865 0.90559 1.19008 1.00412 0.95620 0.96244 0.92600 0.92901 0.92673 0.88756 0.90419 0.86402 0.89284 0.85592 0.85818 0.85520 0.74485 0.84412 0.83166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 8.49 36.01 0.31 -1.57 16 2 C -0.03 -0.70 4.88 -104.66 -0.51 -1.21 16 3 C -0.23 -5.16 9.36 -39.29 -0.37 -5.52 16 4 C 0.12 3.03 5.57 -106.80 -0.60 2.43 16 5 C -0.45 -11.20 9.03 -37.90 -0.34 -11.54 16 6 H 0.08 1.91 7.91 -52.49 -0.42 1.49 16 7 C 0.08 1.79 5.13 -17.32 -0.09 1.70 16 8 N -0.78 -18.94 10.96 55.55 0.61 -18.33 16 9 Si 0.91 17.50 29.60 -169.99 -5.03 12.46 16 10 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 11 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 12 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 13 C -0.17 -4.19 8.62 -39.29 -0.34 -4.53 16 14 C -0.07 -1.53 9.67 -39.62 -0.38 -1.92 16 15 C -0.22 -4.43 4.53 -104.66 -0.47 -4.91 16 16 C 0.06 1.02 4.13 -104.56 -0.43 0.59 16 17 C -0.14 -2.29 9.72 -39.13 -0.38 -2.67 16 18 C -0.08 -1.11 9.92 -40.05 -0.40 -1.51 16 19 C -0.13 -1.97 9.96 -39.36 -0.39 -2.36 16 20 C 0.15 2.61 6.60 -84.88 -0.56 2.05 16 21 N -0.51 -8.58 10.37 -11.07 -0.11 -8.70 16 22 C 0.34 5.12 7.72 -17.02 -0.13 4.98 16 23 O -0.49 -6.10 13.55 -18.44 -0.25 -6.35 16 24 C -0.21 -3.06 9.96 -39.56 -0.39 -3.46 16 25 C -0.01 -0.23 7.56 -39.34 -0.30 -0.52 16 26 C -0.11 -1.95 5.14 -106.52 -0.55 -2.50 16 27 H 0.06 0.89 6.70 -51.93 -0.35 0.54 16 28 H 0.05 0.89 6.88 -51.93 -0.36 0.53 16 29 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 30 H 0.09 2.03 8.06 -52.48 -0.42 1.61 16 31 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 32 H 0.12 2.97 6.16 -52.49 -0.32 2.65 16 33 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 34 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 35 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.40 2.81 9.06 45.56 0.41 3.22 16 38 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.15 2.64 6.12 -52.49 -0.32 2.32 16 LS Contribution 329.34 15.07 4.96 4.96 Total: -1.00 -27.81 329.34 -9.59 -37.40 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -3.44 Total: 11.00 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -6.33 Total: -32.45 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.49 Total: -27.03 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.25 Total: -6.35 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.81 -9.59 -37.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244317536.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.470 kcal (2) G-P(sol) polarization free energy of solvation -27.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds