Wall clock time and date at job start Tue Mar 31 2020 08:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86801 * 119.99928 * 2 1 4 4 H 1.48502 * 109.46926 * 239.99810 * 3 2 1 5 5 H 1.48499 * 109.47522 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47236 * 120.00263 * 3 2 1 7 7 C 1.40029 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00400 * 179.72807 * 7 2 1 9 9 C 1.41330 * 119.99408 * 359.97438 * 7 2 1 10 10 C 1.40610 * 119.78569 * 179.72856 * 9 7 2 11 11 C 1.38315 * 119.13229 * 179.97438 * 10 9 7 12 12 C 1.38691 * 118.66943 * 0.02562 * 11 10 9 13 13 C 1.39645 * 119.49609 * 359.97438 * 12 11 10 14 14 N 1.39254 * 119.57598 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00072 * 174.64021 * 14 13 12 16 16 O 1.21586 * 119.99931 * 5.15312 * 15 14 13 17 17 N 1.34767 * 119.99992 * 185.15168 * 15 14 13 18 18 C 1.46506 * 119.99963 * 179.97438 * 17 15 14 19 19 H 1.08996 * 112.84739 * 23.80894 * 18 17 15 20 20 C 1.53787 * 113.61274 * 155.00322 * 18 17 15 21 21 C 1.53778 * 87.08031 * 89.11765 * 20 18 17 22 22 H 1.08999 * 113.61474 * 270.87762 * 21 20 18 23 23 C 1.50701 * 113.61462 * 140.06558 * 21 20 18 24 24 O 1.20827 * 119.99535 * 359.97438 * 23 21 20 25 25 O 1.34227 * 120.00225 * 179.97438 * 23 21 20 26 26 C 1.53777 * 113.61659 * 252.49872 * 18 17 15 27 27 N 1.31930 * 120.84816 * 359.72444 * 13 12 11 28 28 H 0.97006 * 120.00099 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.43842 * 359.97438 * 10 9 7 30 30 H 1.07997 * 120.66749 * 179.97438 * 11 10 9 31 31 H 1.07994 * 120.25469 * 180.02562 * 12 11 10 32 32 H 0.96995 * 119.99864 * 354.64308 * 14 13 12 33 33 H 0.97004 * 120.00519 * 0.02562 * 17 15 14 34 34 H 1.08995 * 113.61200 * 203.66672 * 20 18 17 35 35 H 1.08999 * 113.61172 * 334.56729 * 20 18 17 36 36 H 0.96703 * 117.00176 * 179.97438 * 25 23 21 37 37 H 1.08999 * 113.61577 * 25.43127 * 26 18 17 38 38 H 1.09003 * 113.61981 * 156.33627 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0050 9 6 1.3009 -2.4366 -0.0005 10 6 2.0084 -3.6517 -0.0069 11 6 1.3031 -4.8415 -0.0062 12 6 -0.0829 -4.7934 0.0001 13 6 -0.7279 -3.5549 0.0062 14 7 -2.1195 -3.5046 0.0120 15 6 -2.7506 -2.3193 0.1269 16 8 -2.1087 -1.2868 0.1312 17 7 -4.0932 -2.2786 0.2371 18 6 -4.7791 -0.9902 0.3625 19 1 -4.2010 -0.1614 -0.0461 20 6 -6.2390 -1.0200 -0.1200 21 6 -6.6221 -1.4238 1.3135 22 1 -6.6156 -2.5010 1.4802 23 6 -7.8814 -0.7623 1.8110 24 8 -8.4838 0.0039 1.0969 25 8 -8.3339 -1.0244 3.0472 26 6 -5.3329 -0.7218 1.7718 27 7 -0.0358 -2.4317 0.0114 28 1 -0.4850 0.8401 -0.0004 29 1 3.0883 -3.6560 -0.0121 30 1 1.8213 -5.7890 -0.0114 31 1 -0.6591 -5.7069 0.0011 32 1 -2.6347 -4.3227 -0.0666 33 1 -4.6053 -3.1024 0.2340 34 1 -6.6213 -0.0429 -0.4152 35 1 -6.4385 -1.7950 -0.8600 36 1 -9.1455 -0.5760 3.3219 37 1 -4.8010 -1.2560 2.5590 38 1 -5.4675 0.3369 1.9938 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:10 Heat of formation + Delta-G solvation = -33.619135 kcal Electronic energy + Delta-G solvation = -24470.569789 eV Core-core repulsion = 20701.044936 eV Total energy + Delta-G solvation = -3769.524853 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95919 -39.61590 -38.45928 -37.24705 -36.25730 -34.05701 -32.99411 -32.57876 -30.26041 -28.93198 -26.90640 -25.89621 -25.46182 -22.68692 -21.75429 -21.21849 -20.05173 -19.22641 -18.46980 -18.06379 -17.31183 -16.77019 -16.21195 -15.96489 -15.32036 -14.72613 -14.59500 -14.40730 -14.22918 -13.69397 -13.58308 -13.08696 -12.81721 -12.77885 -12.59712 -12.04748 -11.99756 -11.81873 -11.76221 -11.13115 -10.94253 -10.86942 -10.80422 -10.63879 -10.45525 -10.42521 -9.92519 -9.68689 -9.14516 -9.00610 -8.55281 -7.93305 -7.19841 -6.93370 -6.08833 -4.36757 1.95096 2.82467 2.86707 3.14283 3.16061 3.18917 3.20773 3.30101 4.08013 4.09376 4.20620 4.30137 4.64745 4.79411 4.84577 4.99091 5.10860 5.46767 5.57606 5.72990 5.79186 5.86850 6.01956 6.08148 6.13515 6.24858 6.49308 6.61866 6.81149 6.87022 6.96245 7.25620 7.35873 7.63623 7.65757 7.74809 7.83762 8.18841 8.31150 8.65326 8.81857 9.08430 9.57327 10.28945 10.52198 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016016 B = 0.003783 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.857176 B = 7399.803828 C = 8809.859184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.649 5.649 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.425 4.425 8 H 0.081 0.919 9 C 0.271 3.729 10 C -0.307 4.307 11 C -0.036 4.036 12 C -0.359 4.359 13 C 0.387 3.613 14 N -0.672 5.672 15 C 0.665 3.335 16 O -0.459 6.459 17 N -0.742 5.742 18 C 0.153 3.847 19 H 0.114 0.886 20 C -0.127 4.127 21 C -0.113 4.113 22 H 0.123 0.877 23 C 0.489 3.511 24 O -0.517 6.517 25 O -0.516 6.516 26 C -0.134 4.134 27 N -0.472 5.472 28 H 0.272 0.728 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.395 0.605 33 H 0.385 0.615 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.407 0.593 37 H 0.086 0.914 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.689 -2.840 2.974 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.267 5.267 2 C -0.172 4.172 3 Si 0.719 3.281 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.099 0.901 9 C 0.146 3.854 10 C -0.330 4.330 11 C -0.060 4.060 12 C -0.385 4.385 13 C 0.147 3.853 14 N -0.321 5.321 15 C 0.363 3.637 16 O -0.322 6.322 17 N -0.401 5.401 18 C 0.046 3.954 19 H 0.132 0.868 20 C -0.165 4.165 21 C -0.132 4.132 22 H 0.140 0.860 23 C 0.332 3.668 24 O -0.405 6.405 25 O -0.327 6.327 26 C -0.174 4.174 27 N -0.190 5.190 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.228 0.772 33 H 0.217 0.783 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.265 0.735 37 H 0.104 0.896 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.479 -0.804 2.676 14.747 hybrid contribution -0.452 -0.833 0.262 0.983 sum -14.931 -1.637 2.937 15.305 Atomic orbital electron populations 1.70330 1.05589 1.27407 1.23414 1.26177 0.95143 1.00478 0.95443 0.86609 0.80220 0.81659 0.79617 1.19229 1.20428 1.19226 1.19542 0.94010 0.89410 1.42603 0.90050 1.18378 0.87149 0.91927 0.87919 1.21625 0.98540 0.93552 1.19259 1.20545 0.93139 0.96513 0.95831 1.20427 0.94745 0.94782 1.28515 1.18323 0.82390 0.90893 0.93697 1.42538 1.05269 1.07836 1.76432 1.16420 0.81257 0.85567 0.80446 1.91398 1.62077 1.29846 1.48867 1.44999 1.05911 1.07497 1.81694 1.21374 0.91740 0.87772 0.94533 0.86846 1.23400 0.95335 1.04088 0.93676 1.22662 0.89806 1.01724 0.98982 0.85952 1.23493 0.85719 0.78991 0.78620 1.90711 1.57958 1.34888 1.56965 1.84582 1.45987 1.68423 1.33754 1.23455 0.92792 1.01181 0.99949 1.68681 1.06877 1.23123 1.20354 0.91596 0.88609 0.88647 0.89184 0.77227 0.78259 0.87467 0.89938 0.73463 0.89550 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -17.95 8.99 55.55 0.50 -17.45 16 2 C 0.06 1.51 5.50 -17.35 -0.10 1.41 16 3 Si 0.89 19.29 29.56 -169.99 -5.02 14.26 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.43 -11.72 9.14 -37.74 -0.34 -12.07 16 8 H 0.08 2.10 7.85 -52.49 -0.41 1.68 16 9 C 0.27 7.64 6.55 -85.00 -0.56 7.08 16 10 C -0.31 -7.73 9.83 -38.66 -0.38 -8.11 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.36 -7.99 9.96 -38.89 -0.39 -8.37 16 13 C 0.39 9.35 7.43 -154.98 -1.15 8.19 16 14 N -0.67 -12.89 5.39 -15.79 -0.09 -12.98 16 15 C 0.66 13.00 8.52 -86.93 -0.74 12.26 16 16 O -0.46 -11.34 11.70 5.29 0.06 -11.27 16 17 N -0.74 -9.98 5.27 -57.88 -0.30 -10.28 16 18 C 0.15 1.91 4.32 -67.11 -0.29 1.62 16 19 H 0.11 1.71 7.46 -51.93 -0.39 1.33 16 20 C -0.13 -1.23 7.15 -25.92 -0.19 -1.42 16 21 C -0.11 -1.03 4.13 -90.96 -0.38 -1.40 16 22 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 23 C 0.49 4.95 7.86 36.01 0.28 5.23 16 24 O -0.52 -6.69 16.66 -18.75 -0.31 -7.00 16 25 O -0.52 -4.14 13.42 -39.25 -0.53 -4.67 16 26 C -0.13 -1.46 7.43 -25.92 -0.19 -1.66 16 27 N -0.47 -13.21 5.73 -10.26 -0.06 -13.27 16 28 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 29 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.39 5.71 8.71 -40.82 -0.36 5.35 16 33 H 0.38 3.81 8.72 -40.82 -0.36 3.46 16 34 H 0.11 1.11 7.44 -51.93 -0.39 0.73 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.41 1.56 9.10 45.56 0.41 1.98 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 330.28 15.07 4.98 4.98 Total: -1.00 -35.36 330.28 -9.16 -44.53 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -3.57 Total: 11.61 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -4.82 Total: 1.55 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.05 Total: -53.98 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.78 Total: -22.95 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.36 -9.16 -44.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.910 kcal (2) G-P(sol) polarization free energy of solvation -35.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds