Wall clock time and date at job start Tue Mar 31 2020 08:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86804 * 119.99697 * 2 1 4 4 H 1.48496 * 109.46871 * 270.00060 * 3 2 1 5 5 H 1.48498 * 109.47035 * 30.00390 * 3 2 1 6 6 H 1.48499 * 109.47037 * 150.00415 * 3 2 1 7 7 C 1.40032 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99658 * 180.02562 * 7 2 1 9 9 C 1.41326 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.40609 * 119.79078 * 180.02562 * 9 7 2 11 11 C 1.38305 * 119.13232 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.67142 * 359.97438 * 11 10 9 13 13 C 1.39647 * 119.49734 * 0.02562 * 12 11 10 14 14 N 1.39251 * 119.57440 * 180.02562 * 13 12 11 15 15 C 1.34771 * 119.99727 * 185.33610 * 14 13 12 16 16 O 1.21575 * 120.00291 * 354.84038 * 15 14 13 17 17 N 1.34783 * 120.00013 * 174.84107 * 15 14 13 18 18 C 1.46500 * 120.00073 * 179.71802 * 17 15 14 19 19 H 1.09003 * 112.84539 * 25.61641 * 18 17 15 20 20 C 1.53784 * 113.61079 * 156.80456 * 18 17 15 21 21 C 1.53784 * 87.07765 * 139.98529 * 20 18 17 22 22 H 1.08998 * 113.61116 * 89.19870 * 21 20 18 23 23 C 1.50694 * 113.61499 * 220.02038 * 21 20 18 24 24 O 1.20829 * 120.00315 * 359.97438 * 23 21 20 25 25 O 1.34232 * 119.99997 * 180.02562 * 23 21 20 26 26 C 1.53775 * 113.61641 * 254.41832 * 18 17 15 27 27 N 1.31921 * 120.84924 * 0.26918 * 13 12 11 28 28 H 0.96995 * 119.99794 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.42884 * 0.02562 * 10 9 7 30 30 H 1.08007 * 120.66499 * 180.02562 * 11 10 9 31 31 H 1.08003 * 120.25037 * 180.02562 * 12 11 10 32 32 H 0.96995 * 119.99909 * 5.32992 * 14 13 12 33 33 H 0.97002 * 119.99777 * 0.02562 * 17 15 14 34 34 H 1.08998 * 113.61649 * 254.53159 * 20 18 17 35 35 H 1.08991 * 113.61332 * 25.35705 * 20 18 17 36 36 H 0.96700 * 116.99470 * 180.02562 * 25 23 21 37 37 H 1.09001 * 113.61607 * 334.56554 * 26 18 17 38 38 H 1.08996 * 113.61837 * 105.47220 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4388 2.6527 0.7001 6 1 3.5390 1.4403 0.6999 7 6 2.0077 -1.2127 -0.0005 8 1 3.0877 -1.2126 -0.0001 9 6 1.3011 -2.4366 -0.0005 10 6 2.0086 -3.6517 -0.0005 11 6 1.3034 -4.8415 0.0000 12 6 -0.0826 -4.7934 0.0011 13 6 -0.7277 -3.5549 0.0010 14 7 -2.1193 -3.5048 0.0026 15 6 -2.7510 -2.3192 -0.1059 16 8 -2.1092 -1.2867 -0.1108 17 7 -4.0942 -2.2783 -0.2091 18 6 -4.7814 -0.9893 -0.3209 19 1 -4.1502 -0.2087 -0.7457 20 6 -6.1683 -1.0856 -0.9781 21 6 -6.6464 -0.0608 0.0641 22 1 -6.5270 0.9746 -0.2550 23 6 -8.0213 -0.3504 0.6089 24 8 -8.6350 -1.3152 0.2184 25 8 -8.5646 0.4640 1.5272 26 6 -5.5053 -0.5633 0.9672 27 7 -0.0357 -2.4318 -0.0053 28 1 -0.4849 0.8400 0.0004 29 1 3.0886 -3.6558 -0.0001 30 1 1.8217 -5.7891 0.0004 31 1 -0.6587 -5.7070 0.0019 32 1 -2.6340 -4.3231 0.0818 33 1 -4.6063 -3.1021 -0.2048 34 1 -6.1935 -0.7116 -2.0016 35 1 -6.6337 -2.0657 -0.8740 36 1 -9.4484 0.2371 1.8472 37 1 -5.7897 -1.3999 1.6053 38 1 -4.9959 0.2317 1.5118 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480013.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:13 Heat of formation + Delta-G solvation = -35.702243 kcal Electronic energy + Delta-G solvation = -24429.298524 eV Core-core repulsion = 20659.683341 eV Total energy + Delta-G solvation = -3769.615183 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.91756 -39.55946 -38.41140 -37.26184 -36.26057 -34.04700 -32.99608 -32.73982 -30.25299 -28.94454 -26.77414 -25.89244 -25.44138 -22.73381 -21.56257 -21.05965 -20.00510 -19.58903 -18.39331 -18.00887 -17.24808 -17.00550 -16.10635 -15.95612 -15.18261 -14.90247 -14.53008 -14.42466 -14.35199 -13.66389 -13.36393 -13.08725 -12.80882 -12.70818 -12.58577 -12.01102 -11.94161 -11.78642 -11.48406 -11.30855 -11.14640 -10.92264 -10.83501 -10.61918 -10.52756 -10.43441 -9.90318 -9.67978 -9.11111 -9.00202 -8.49464 -7.92318 -7.18620 -6.91744 -6.08396 -4.36072 1.93815 2.75232 2.86720 3.15268 3.19184 3.21699 3.30007 3.33192 4.07376 4.09347 4.22612 4.30277 4.70559 4.79258 4.82483 4.99927 5.12829 5.48696 5.51406 5.57308 5.76486 5.86553 6.07312 6.10566 6.18622 6.24449 6.50705 6.63745 6.82815 6.87943 6.97995 7.26526 7.38578 7.64538 7.65005 7.76831 7.84771 8.20117 8.32591 8.67835 8.82875 9.09332 9.60020 10.29945 10.52618 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.003795 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.806763 B = 7376.560337 C = 8905.468838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.649 5.649 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.307 4.307 11 C -0.036 4.036 12 C -0.358 4.358 13 C 0.387 3.613 14 N -0.673 5.673 15 C 0.664 3.336 16 O -0.461 6.461 17 N -0.748 5.748 18 C 0.157 3.843 19 H 0.123 0.877 20 C -0.128 4.128 21 C -0.111 4.111 22 H 0.129 0.871 23 C 0.492 3.508 24 O -0.518 6.518 25 O -0.515 6.515 26 C -0.135 4.135 27 N -0.472 5.472 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.395 0.605 33 H 0.386 0.614 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.407 0.593 37 H 0.087 0.913 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.897 0.410 0.780 14.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.267 5.267 2 C -0.172 4.172 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.330 4.330 11 C -0.060 4.060 12 C -0.385 4.385 13 C 0.147 3.853 14 N -0.322 5.322 15 C 0.362 3.638 16 O -0.325 6.325 17 N -0.406 5.406 18 C 0.050 3.950 19 H 0.140 0.860 20 C -0.166 4.166 21 C -0.131 4.131 22 H 0.147 0.853 23 C 0.334 3.666 24 O -0.406 6.406 25 O -0.326 6.326 26 C -0.175 4.175 27 N -0.190 5.190 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.228 0.772 33 H 0.219 0.781 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.266 0.734 37 H 0.105 0.895 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.653 2.259 0.494 14.834 hybrid contribution -0.491 -1.173 0.323 1.312 sum -15.144 1.086 0.817 15.205 Atomic orbital electron populations 1.70354 1.05577 1.27222 1.23578 1.26186 0.95140 1.00481 0.95430 0.86549 0.80584 0.82038 0.78966 1.19714 1.20363 1.18815 1.19570 0.94023 0.89393 1.42610 0.90025 1.18395 0.87167 0.91941 0.87895 1.21622 0.98531 0.93555 1.19278 1.20544 0.93136 0.96517 0.95839 1.20439 0.94755 0.94816 1.28448 1.18333 0.82438 0.90885 0.93628 1.42566 1.05260 1.07893 1.76432 1.16485 0.81397 0.85527 0.80405 1.91383 1.62280 1.29858 1.48983 1.45260 1.05807 1.07875 1.81693 1.22021 0.91046 0.87339 0.94625 0.85954 1.23397 0.95438 0.99454 0.98310 1.22358 0.87943 1.02987 0.99789 0.85332 1.23366 0.88251 0.79379 0.75554 1.90709 1.62842 1.29009 1.58031 1.84578 1.37707 1.54929 1.55429 1.23552 0.94003 1.01810 0.98121 1.68690 1.06853 1.23119 1.20358 0.91707 0.88613 0.88653 0.89187 0.77226 0.78108 0.89725 0.88321 0.73413 0.89479 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -17.89 8.98 55.55 0.50 -17.39 16 2 C 0.06 1.50 5.50 -17.34 -0.10 1.41 16 3 Si 0.89 19.20 29.56 -169.99 -5.02 14.18 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.43 -11.75 9.14 -37.74 -0.34 -12.09 16 8 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.27 7.66 6.55 -84.99 -0.56 7.11 16 10 C -0.31 -7.78 9.83 -38.66 -0.38 -8.16 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -8.09 9.95 -38.89 -0.39 -8.48 16 13 C 0.39 9.47 7.43 -154.99 -1.15 8.32 16 14 N -0.67 -13.24 5.39 -15.79 -0.09 -13.32 16 15 C 0.66 13.24 8.52 -86.92 -0.74 12.50 16 16 O -0.46 -11.44 11.72 5.30 0.06 -11.38 16 17 N -0.75 -10.56 5.37 -57.88 -0.31 -10.87 16 18 C 0.16 1.94 4.21 -67.12 -0.28 1.66 16 19 H 0.12 1.76 7.50 -51.93 -0.39 1.37 16 20 C -0.13 -1.24 7.15 -25.92 -0.19 -1.43 16 21 C -0.11 -1.02 4.26 -90.86 -0.39 -1.41 16 22 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 23 C 0.49 4.94 7.86 36.00 0.28 5.22 16 24 O -0.52 -6.61 16.66 -18.75 -0.31 -6.92 16 25 O -0.52 -4.09 13.42 -39.26 -0.53 -4.62 16 26 C -0.14 -1.47 7.44 -25.83 -0.19 -1.66 16 27 N -0.47 -13.29 5.73 -10.26 -0.06 -13.35 16 28 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 29 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 30 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 31 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 32 H 0.39 5.96 8.71 -40.82 -0.36 5.61 16 33 H 0.39 4.28 8.73 -40.82 -0.36 3.93 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.00 7.41 -51.93 -0.38 0.61 16 36 H 0.41 1.52 9.10 45.56 0.41 1.93 16 37 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -35.45 330.45 -9.17 -44.62 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -3.57 Total: 12.31 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -4.82 Total: 1.76 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.04 Total: -54.94 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.78 Total: -22.91 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.45 -9.17 -44.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480013.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.918 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds