Wall clock time and date at job start Tue Mar 31 2020 08:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86804 * 119.99697 * 2 1 4 4 H 1.48496 * 109.46871 * 270.00060 * 3 2 1 5 5 H 1.48498 * 109.47035 * 30.00390 * 3 2 1 6 6 H 1.48499 * 109.47037 * 150.00415 * 3 2 1 7 7 C 1.40032 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99658 * 180.02562 * 7 2 1 9 9 C 1.41326 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.40609 * 119.79078 * 180.02562 * 9 7 2 11 11 C 1.38305 * 119.13232 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.67142 * 359.97438 * 11 10 9 13 13 C 1.39647 * 119.49734 * 0.02562 * 12 11 10 14 14 N 1.39251 * 119.57440 * 180.02562 * 13 12 11 15 15 C 1.34771 * 119.99727 * 185.33610 * 14 13 12 16 16 O 1.21575 * 120.00291 * 354.84038 * 15 14 13 17 17 N 1.34783 * 120.00013 * 174.84107 * 15 14 13 18 18 C 1.46500 * 120.00073 * 179.71802 * 17 15 14 19 19 H 1.09003 * 112.84539 * 25.61641 * 18 17 15 20 20 C 1.53784 * 113.61079 * 156.80456 * 18 17 15 21 21 C 1.53784 * 87.07765 * 139.98529 * 20 18 17 22 22 H 1.08998 * 113.61116 * 89.19870 * 21 20 18 23 23 C 1.50694 * 113.61499 * 220.02038 * 21 20 18 24 24 O 1.20829 * 120.00315 * 359.97438 * 23 21 20 25 25 O 1.34232 * 119.99997 * 180.02562 * 23 21 20 26 26 C 1.53775 * 113.61641 * 254.41832 * 18 17 15 27 27 N 1.31921 * 120.84924 * 0.26918 * 13 12 11 28 28 H 0.96995 * 119.99794 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.42884 * 0.02562 * 10 9 7 30 30 H 1.08007 * 120.66499 * 180.02562 * 11 10 9 31 31 H 1.08003 * 120.25037 * 180.02562 * 12 11 10 32 32 H 0.96995 * 119.99909 * 5.32992 * 14 13 12 33 33 H 0.97002 * 119.99777 * 0.02562 * 17 15 14 34 34 H 1.08998 * 113.61649 * 254.53159 * 20 18 17 35 35 H 1.08991 * 113.61332 * 25.35705 * 20 18 17 36 36 H 0.96700 * 116.99470 * 180.02562 * 25 23 21 37 37 H 1.09001 * 113.61607 * 334.56554 * 26 18 17 38 38 H 1.08996 * 113.61837 * 105.47220 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4388 2.6527 0.7001 6 1 3.5390 1.4403 0.6999 7 6 2.0077 -1.2127 -0.0005 8 1 3.0877 -1.2126 -0.0001 9 6 1.3011 -2.4366 -0.0005 10 6 2.0086 -3.6517 -0.0005 11 6 1.3034 -4.8415 0.0000 12 6 -0.0826 -4.7934 0.0011 13 6 -0.7277 -3.5549 0.0010 14 7 -2.1193 -3.5048 0.0026 15 6 -2.7510 -2.3192 -0.1059 16 8 -2.1092 -1.2867 -0.1108 17 7 -4.0942 -2.2783 -0.2091 18 6 -4.7814 -0.9893 -0.3209 19 1 -4.1502 -0.2087 -0.7457 20 6 -6.1683 -1.0856 -0.9781 21 6 -6.6464 -0.0608 0.0641 22 1 -6.5270 0.9746 -0.2550 23 6 -8.0213 -0.3504 0.6089 24 8 -8.6350 -1.3152 0.2184 25 8 -8.5646 0.4640 1.5272 26 6 -5.5053 -0.5633 0.9672 27 7 -0.0357 -2.4318 -0.0053 28 1 -0.4849 0.8400 0.0004 29 1 3.0886 -3.6558 -0.0001 30 1 1.8217 -5.7891 0.0004 31 1 -0.6587 -5.7070 0.0019 32 1 -2.6340 -4.3231 0.0818 33 1 -4.6063 -3.1021 -0.2048 34 1 -6.1935 -0.7116 -2.0016 35 1 -6.6337 -2.0657 -0.8740 36 1 -9.4484 0.2371 1.8472 37 1 -5.7897 -1.3999 1.6053 38 1 -4.9959 0.2317 1.5118 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480013.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:12 Heat of formation + Delta-G solvation = -60.901566 kcal Electronic energy + Delta-G solvation = -24430.391249 eV Core-core repulsion = 20659.683341 eV Total energy + Delta-G solvation = -3770.707908 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79430 -41.00597 -39.77390 -38.70137 -37.03673 -35.84483 -34.79172 -34.10238 -32.15895 -30.75746 -27.86818 -27.23657 -26.74372 -24.19983 -23.20161 -22.50250 -21.40330 -20.64534 -19.73083 -19.16950 -18.62131 -18.23897 -17.69084 -16.82158 -16.46491 -16.26910 -16.23136 -15.82501 -15.71677 -15.50955 -14.71731 -14.62352 -14.24016 -13.97329 -13.67934 -13.52253 -13.33987 -12.85753 -12.70003 -12.57003 -12.52099 -12.39192 -12.28103 -12.22127 -11.75558 -11.73347 -11.45537 -11.38794 -10.83116 -10.80411 -9.87223 -9.76402 -9.07446 -8.74984 -7.98577 -6.37382 1.00143 1.15454 1.31455 1.42580 1.54222 1.56890 1.78957 2.22635 2.30162 2.58075 3.06820 3.35030 3.40577 3.47408 3.84503 3.94259 4.11311 4.38197 4.44452 4.59360 4.66545 4.72477 4.76973 4.88392 4.93270 4.99617 4.99829 5.09814 5.20973 5.34507 5.60192 5.70434 5.79291 5.89024 5.96160 6.08202 6.35181 6.46226 6.85685 7.00124 7.11298 7.29683 8.05806 8.41816 8.62525 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.003795 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.806763 B = 7376.560337 C = 8905.468838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.683 5.683 2 C 0.011 3.989 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.467 4.467 8 H 0.084 0.916 9 C 0.237 3.763 10 C -0.332 4.332 11 C -0.034 4.034 12 C -0.348 4.348 13 C 0.366 3.634 14 N -0.663 5.663 15 C 0.658 3.342 16 O -0.513 6.513 17 N -0.726 5.726 18 C 0.143 3.857 19 H 0.099 0.901 20 C -0.113 4.113 21 C -0.101 4.101 22 H 0.148 0.852 23 C 0.499 3.501 24 O -0.547 6.547 25 O -0.512 6.512 26 C -0.131 4.131 27 N -0.506 5.506 28 H 0.270 0.730 29 H 0.103 0.897 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.417 0.583 33 H 0.404 0.596 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.427 0.573 37 H 0.089 0.911 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.252 -0.207 0.836 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.301 5.301 2 C -0.215 4.215 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.497 4.497 8 H 0.102 0.898 9 C 0.111 3.889 10 C -0.355 4.355 11 C -0.059 4.059 12 C -0.373 4.373 13 C 0.126 3.874 14 N -0.313 5.313 15 C 0.356 3.644 16 O -0.380 6.380 17 N -0.385 5.385 18 C 0.037 3.963 19 H 0.117 0.883 20 C -0.151 4.151 21 C -0.121 4.121 22 H 0.166 0.834 23 C 0.343 3.657 24 O -0.437 6.437 25 O -0.325 6.325 26 C -0.170 4.170 27 N -0.225 5.225 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.254 0.746 33 H 0.240 0.760 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.288 0.712 37 H 0.107 0.893 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.098 1.589 0.566 16.186 hybrid contribution -0.196 -1.145 0.338 1.210 sum -16.294 0.445 0.905 16.325 Atomic orbital electron populations 1.70549 1.07051 1.27889 1.24651 1.27013 0.96048 1.03811 0.94615 0.85362 0.79123 0.77061 0.79069 1.19173 1.19700 1.18163 1.19887 0.94375 0.90530 1.44946 0.89790 1.18884 0.87980 0.93359 0.88644 1.21802 0.99163 0.93892 1.20652 1.21019 0.93538 0.97313 0.93990 1.20912 0.95128 0.95608 1.25693 1.18832 0.84234 0.91032 0.93316 1.42425 1.03880 1.09083 1.75935 1.16760 0.82849 0.84855 0.79940 1.91373 1.63929 1.31512 1.51192 1.45003 1.03810 1.09549 1.80157 1.22167 0.91692 0.85970 0.96445 0.88294 1.23289 0.92852 0.99890 0.99051 1.22325 0.87166 1.03883 0.98708 0.83393 1.23326 0.88170 0.78863 0.75355 1.90707 1.63682 1.30225 1.59124 1.84534 1.39151 1.54251 1.54593 1.23454 0.94343 1.01684 0.97505 1.68659 1.07153 1.25278 1.21448 0.91909 0.87868 0.84587 0.85153 0.74637 0.75981 0.88453 0.88123 0.71169 0.89287 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -39.29 8.98 21.84 0.20 -39.09 16 2 C 0.01 0.60 5.50 85.29 0.47 1.07 16 3 Si 0.97 40.73 29.56 68.60 2.03 42.76 16 4 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 7 C -0.47 -26.83 9.14 23.47 0.21 -26.61 16 8 H 0.08 4.53 7.85 -2.91 -0.02 4.51 16 9 C 0.24 13.84 6.55 40.20 0.26 14.11 16 10 C -0.33 -16.99 9.83 22.86 0.22 -16.77 16 11 C -0.03 -1.51 10.15 22.39 0.23 -1.29 16 12 C -0.35 -14.96 9.95 22.72 0.23 -14.74 16 13 C 0.37 17.85 7.43 133.25 0.99 18.84 16 14 N -0.66 -25.62 5.39 -322.14 -1.74 -27.35 16 15 C 0.66 26.45 8.52 179.05 1.53 27.97 16 16 O -0.51 -26.38 11.72 -3.95 -0.05 -26.42 16 17 N -0.73 -20.01 5.37 -455.30 -2.44 -22.45 16 18 C 0.14 3.50 4.21 45.52 0.19 3.69 16 19 H 0.10 2.95 7.50 -2.39 -0.02 2.93 16 20 C -0.11 -2.00 7.15 31.12 0.22 -1.78 16 21 C -0.10 -1.68 4.26 -10.95 -0.05 -1.73 16 22 H 0.15 1.90 8.14 -2.39 -0.02 1.89 16 23 C 0.50 8.97 7.86 71.23 0.56 9.53 16 24 O -0.55 -12.93 16.66 21.96 0.37 -12.56 16 25 O -0.51 -6.92 13.42 -51.44 -0.69 -7.61 16 26 C -0.13 -2.72 7.44 31.18 0.23 -2.48 16 27 N -0.51 -29.35 5.73 -186.37 -1.07 -30.42 16 28 H 0.27 14.57 8.29 -92.71 -0.77 13.80 16 29 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 30 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 32 H 0.42 11.74 8.71 -92.71 -0.81 10.93 16 33 H 0.40 8.26 8.73 -92.71 -0.81 7.45 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.10 1.81 7.41 -2.39 -0.02 1.79 16 36 H 0.43 2.13 9.10 -74.06 -0.67 1.46 16 37 H 0.09 1.82 8.10 -2.39 -0.02 1.81 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -80.15 330.45 0.76 -79.39 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -1.15 Total: 33.93 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 5.30 Total: 9.82 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -5.05 Total: -119.31 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -0.37 Total: -46.59 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -80.15 0.76 -79.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480013.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.493 kcal (2) G-P(sol) polarization free energy of solvation -80.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds