Wall clock time and date at job start Tue Mar 31 2020 08:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31261 * 119.86128 * 2 1 4 4 C 1.33999 * 120.80764 * 180.30097 * 3 2 1 5 5 C 1.38800 * 132.49151 * 179.71298 * 4 3 2 6 6 C 1.39139 * 107.61250 * 179.97438 * 5 4 3 7 7 O 1.35923 * 125.57350 * 180.02562 * 6 5 4 8 8 N 1.31715 * 108.86155 * 359.97438 * 6 5 4 9 9 N 1.37195 * 120.53469 * 359.68622 * 4 3 2 10 10 C 1.36437 * 119.78510 * 0.02562 * 9 4 3 11 11 C 1.50701 * 120.42851 * 180.02562 * 10 9 4 12 12 C 1.35576 * 119.14316 * 0.02562 * 10 9 4 13 13 C 1.50703 * 120.27194 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46912 * 89.99846 * 13 12 10 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 O 1.21208 * 120.00367 * 359.97438 * 15 14 13 17 17 O 1.34316 * 119.99577 * 179.97438 * 15 14 13 18 18 C 1.34924 * 116.99628 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99978 * 359.97438 * 18 17 15 20 20 C 1.38754 * 119.99782 * 180.02562 * 18 17 15 21 21 N 1.31444 * 119.99912 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00048 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47249 * 59.99612 * 22 20 18 24 24 H 1.48496 * 109.47588 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46850 * 299.99966 * 22 20 18 26 26 H 1.09005 * 109.47324 * 270.26488 * 1 2 3 27 27 H 1.09000 * 109.47796 * 30.27043 * 1 2 3 28 28 H 1.09003 * 109.46892 * 150.27426 * 1 2 3 29 29 H 1.07994 * 126.19808 * 359.97438 * 5 4 3 30 30 H 0.96702 * 114.00013 * 269.99978 * 7 6 5 31 31 H 1.08998 * 109.47723 * 269.98332 * 11 10 9 32 32 H 1.09004 * 109.47192 * 29.98981 * 11 10 9 33 33 H 1.09001 * 109.46830 * 149.98109 * 11 10 9 34 34 H 1.09002 * 109.47152 * 329.99618 * 13 12 10 35 35 H 1.09001 * 109.46980 * 209.99719 * 13 12 10 36 36 H 1.09001 * 109.47194 * 299.99742 * 14 13 12 37 37 H 1.08992 * 109.47399 * 59.99914 * 14 13 12 38 38 H 0.97001 * 119.99382 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1605 1.1383 0.0000 4 6 3.5003 1.1605 -0.0060 5 6 4.4208 2.1993 -0.0126 6 6 5.6925 1.6349 -0.0164 7 8 6.8638 2.3246 -0.0226 8 7 5.5761 0.3229 -0.0118 9 7 4.2167 -0.0095 -0.0059 10 6 3.5609 -1.2059 -0.0001 11 6 4.3334 -2.4998 0.0007 12 6 2.2051 -1.2156 0.0050 13 6 1.4548 -2.5225 0.0109 14 6 1.2062 -2.9613 1.4554 15 6 0.4564 -4.2686 1.4612 16 8 0.1507 -4.7967 0.4139 17 8 0.1269 -4.8485 2.6271 18 6 -0.5442 -6.0172 2.5617 19 1 -0.7927 -6.4442 1.6014 20 6 -0.9160 -6.6698 3.7284 21 7 -0.6140 -6.1498 4.8972 22 14 -1.8445 -8.2881 3.6379 23 1 -1.0232 -9.2903 2.9124 24 1 -2.1216 -8.7774 5.0123 25 1 -3.1267 -8.0835 2.9170 26 1 -0.3634 0.0048 1.0277 27 1 -0.3635 0.8875 -0.5180 28 1 -0.3633 -0.8925 -0.5096 29 1 4.1915 3.2546 -0.0145 30 1 7.1992 2.5222 -0.9078 31 1 4.5156 -2.8150 -1.0266 32 1 5.2858 -2.3541 0.5105 33 1 3.7575 -3.2664 0.5192 34 1 2.0438 -3.2820 -0.5034 35 1 0.5001 -2.3957 -0.4997 36 1 2.1609 -3.0882 1.9659 37 1 0.6173 -2.2019 1.9696 38 1 -0.8737 -6.6063 5.7127 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057604500.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:46 Heat of formation + Delta-G solvation = -10.011870 kcal Electronic energy + Delta-G solvation = -24201.802562 eV Core-core repulsion = 20433.301397 eV Total energy + Delta-G solvation = -3768.501165 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.60667 -39.54621 -38.92482 -37.25245 -35.84403 -35.15529 -33.38607 -32.19484 -31.17375 -29.75490 -28.55152 -27.92223 -25.75205 -24.30279 -22.38238 -22.09988 -21.18421 -19.86039 -18.95581 -18.08363 -17.77919 -16.87699 -16.64877 -16.23137 -15.46411 -15.25615 -14.91576 -14.65256 -14.42086 -13.89522 -13.83281 -13.57704 -13.56805 -13.36439 -12.99917 -12.86641 -12.59522 -12.32081 -12.17468 -11.90201 -11.71453 -11.55311 -11.24355 -10.93900 -10.77662 -10.71400 -10.50122 -10.42044 -9.91308 -9.86694 -9.35972 -9.08045 -8.62580 -8.02763 -6.45802 -4.14275 0.33525 0.64811 1.64567 2.17983 3.08605 3.13948 3.16599 3.19831 3.35887 3.45995 3.63301 3.87846 4.00544 4.25282 4.40029 4.66993 4.88846 5.00994 5.06504 5.09057 5.15552 5.22514 5.24261 5.28359 5.40686 5.46289 5.55655 5.66132 5.74471 5.76926 5.97230 6.01816 6.11679 6.25432 6.32762 6.70064 7.13333 7.22407 7.34285 7.47471 7.89913 8.64453 9.02889 9.79132 10.71900 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.027953 B = 0.002856 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.453211 B = 9802.740799 C =10171.253122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.228 3.772 3 N -0.477 5.477 4 C 0.281 3.719 5 C -0.291 4.291 6 C 0.298 3.702 7 O -0.456 6.456 8 N -0.325 5.325 9 N -0.296 5.296 10 C 0.201 3.799 11 C -0.126 4.126 12 C -0.181 4.181 13 C -0.053 4.053 14 C -0.102 4.102 15 C 0.396 3.604 16 O -0.558 6.558 17 O -0.214 6.214 18 C -0.384 4.384 19 H 0.096 0.904 20 C 0.042 3.958 21 N -0.865 5.865 22 Si 0.943 3.057 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.269 1.269 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.164 0.836 30 H 0.403 0.597 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 13.282 -10.548 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.066 3.934 3 N -0.190 5.190 4 C 0.053 3.947 5 C -0.323 4.323 6 C 0.099 3.901 7 O -0.260 6.260 8 N -0.162 5.162 9 N -0.070 5.070 10 C 0.086 3.914 11 C -0.182 4.182 12 C -0.188 4.188 13 C -0.091 4.091 14 C -0.140 4.140 15 C 0.243 3.757 16 O -0.456 6.456 17 O -0.120 6.120 18 C -0.460 4.460 19 H 0.113 0.887 20 C -0.162 4.162 21 N -0.501 5.501 22 Si 0.768 3.232 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.194 1.194 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.182 0.818 30 H 0.260 0.740 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.270 13.034 -9.943 18.361 hybrid contribution -0.163 -0.508 -0.373 0.651 sum 8.107 12.525 -10.316 18.139 Atomic orbital electron populations 1.21002 0.86655 1.04864 1.04814 1.21891 0.97955 0.86696 0.86881 1.68117 1.03561 1.28527 1.18808 1.20494 0.88398 0.86224 0.99620 1.20953 0.88976 0.99174 1.23195 1.19472 0.86289 0.88082 0.96210 1.84877 1.35087 1.72145 1.33846 1.77829 0.89999 1.14564 1.33814 1.46647 1.06160 1.06080 1.48110 1.20556 0.91224 0.86036 0.93613 1.21120 1.01004 0.91200 1.04923 1.20211 0.91044 0.98453 1.09052 1.20310 1.00990 0.90755 0.97083 1.21076 1.01427 0.94508 0.96956 1.23018 0.81738 0.87490 0.83486 1.90560 1.55899 1.65640 1.33453 1.83878 1.62109 1.35179 1.30868 1.21169 1.33973 0.96000 0.94856 0.88663 1.25342 0.97246 0.99505 0.94094 1.69983 1.43830 1.38897 0.97423 0.85750 0.79641 0.80202 0.77623 1.19479 1.20385 1.19447 0.88521 0.89506 0.88719 0.81843 0.73959 0.88607 0.89203 0.87837 0.89121 0.88443 0.89107 0.88779 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.80 36.00 0.35 -0.72 16 2 C 0.23 2.76 6.83 -82.11 -0.56 2.20 16 3 N -0.48 -6.59 10.40 -8.47 -0.09 -6.68 16 4 C 0.28 4.04 7.91 -155.49 -1.23 2.81 16 5 C -0.29 -3.77 10.93 -39.04 -0.43 -4.19 16 6 C 0.30 3.81 8.39 -17.27 -0.14 3.67 16 7 O -0.46 -4.49 13.66 -19.50 -0.27 -4.76 16 8 N -0.33 -4.68 12.52 30.41 0.38 -4.30 16 9 N -0.30 -4.21 3.89 -8.50 -0.03 -4.24 16 10 C 0.20 2.54 6.85 -81.49 -0.56 1.98 16 11 C -0.13 -1.30 9.27 36.01 0.33 -0.97 16 12 C -0.18 -2.19 5.11 -104.84 -0.54 -2.73 16 13 C -0.05 -0.67 3.56 -27.88 -0.10 -0.77 16 14 C -0.10 -1.57 5.66 -27.88 -0.16 -1.73 16 15 C 0.40 8.79 7.91 36.01 0.28 9.07 16 16 O -0.56 -13.42 15.22 -19.05 -0.29 -13.71 16 17 O -0.21 -5.80 9.75 -20.73 -0.20 -6.00 16 18 C -0.38 -10.91 9.65 30.92 0.30 -10.61 16 19 H 0.10 2.71 6.86 -52.49 -0.36 2.35 16 20 C 0.04 1.16 5.49 -17.53 -0.10 1.07 16 21 N -0.86 -24.76 13.67 55.48 0.76 -24.00 16 22 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.80 6.00 -51.93 -0.31 0.49 16 29 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.40 1.66 9.06 45.56 0.41 2.08 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 33 H 0.10 1.04 5.86 -51.93 -0.30 0.74 16 34 H 0.09 1.12 6.66 -51.93 -0.35 0.78 16 35 H 0.10 1.18 5.96 -51.93 -0.31 0.87 16 36 H 0.09 1.31 7.40 -51.93 -0.38 0.92 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -35.68 332.21 -5.57 -41.25 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.27 Total: 2.68 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.54 Total: -0.92 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 1.02 Total: -39.22 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.76 Total: -24.47 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.68 -5.57 -41.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057604500.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.237 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds