Wall clock time and date at job start Tue Mar 31 2020 08:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31261 * 119.86128 * 2 1 4 4 C 1.33999 * 120.80764 * 180.30097 * 3 2 1 5 5 C 1.38800 * 132.49151 * 179.71298 * 4 3 2 6 6 C 1.39139 * 107.61250 * 179.97438 * 5 4 3 7 7 O 1.35923 * 125.57350 * 180.02562 * 6 5 4 8 8 N 1.31715 * 108.86155 * 359.97438 * 6 5 4 9 9 N 1.37195 * 120.53469 * 359.68622 * 4 3 2 10 10 C 1.36437 * 119.78510 * 0.02562 * 9 4 3 11 11 C 1.50701 * 120.42851 * 180.02562 * 10 9 4 12 12 C 1.35576 * 119.14316 * 0.02562 * 10 9 4 13 13 C 1.50703 * 120.27194 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46912 * 89.99846 * 13 12 10 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 12 16 16 O 1.21208 * 120.00367 * 359.97438 * 15 14 13 17 17 O 1.34316 * 119.99577 * 179.97438 * 15 14 13 18 18 C 1.34924 * 116.99628 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99978 * 359.97438 * 18 17 15 20 20 C 1.38754 * 119.99782 * 180.02562 * 18 17 15 21 21 N 1.31444 * 119.99912 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00048 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47249 * 59.99612 * 22 20 18 24 24 H 1.48496 * 109.47588 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46850 * 299.99966 * 22 20 18 26 26 H 1.09005 * 109.47324 * 270.26488 * 1 2 3 27 27 H 1.09000 * 109.47796 * 30.27043 * 1 2 3 28 28 H 1.09003 * 109.46892 * 150.27426 * 1 2 3 29 29 H 1.07994 * 126.19808 * 359.97438 * 5 4 3 30 30 H 0.96702 * 114.00013 * 269.99978 * 7 6 5 31 31 H 1.08998 * 109.47723 * 269.98332 * 11 10 9 32 32 H 1.09004 * 109.47192 * 29.98981 * 11 10 9 33 33 H 1.09001 * 109.46830 * 149.98109 * 11 10 9 34 34 H 1.09002 * 109.47152 * 329.99618 * 13 12 10 35 35 H 1.09001 * 109.46980 * 209.99719 * 13 12 10 36 36 H 1.09001 * 109.47194 * 299.99742 * 14 13 12 37 37 H 1.08992 * 109.47399 * 59.99914 * 14 13 12 38 38 H 0.97001 * 119.99382 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1605 1.1383 0.0000 4 6 3.5003 1.1605 -0.0060 5 6 4.4208 2.1993 -0.0126 6 6 5.6925 1.6349 -0.0164 7 8 6.8638 2.3246 -0.0226 8 7 5.5761 0.3229 -0.0118 9 7 4.2167 -0.0095 -0.0059 10 6 3.5609 -1.2059 -0.0001 11 6 4.3334 -2.4998 0.0007 12 6 2.2051 -1.2156 0.0050 13 6 1.4548 -2.5225 0.0109 14 6 1.2062 -2.9613 1.4554 15 6 0.4564 -4.2686 1.4612 16 8 0.1507 -4.7967 0.4139 17 8 0.1269 -4.8485 2.6271 18 6 -0.5442 -6.0172 2.5617 19 1 -0.7927 -6.4442 1.6014 20 6 -0.9160 -6.6698 3.7284 21 7 -0.6140 -6.1498 4.8972 22 14 -1.8445 -8.2881 3.6379 23 1 -1.0232 -9.2903 2.9124 24 1 -2.1216 -8.7774 5.0123 25 1 -3.1267 -8.0835 2.9170 26 1 -0.3634 0.0048 1.0277 27 1 -0.3635 0.8875 -0.5180 28 1 -0.3633 -0.8925 -0.5096 29 1 4.1915 3.2546 -0.0145 30 1 7.1992 2.5222 -0.9078 31 1 4.5156 -2.8150 -1.0266 32 1 5.2858 -2.3541 0.5105 33 1 3.7575 -3.2664 0.5192 34 1 2.0438 -3.2820 -0.5034 35 1 0.5001 -2.3957 -0.4997 36 1 2.1609 -3.0882 1.9659 37 1 0.6173 -2.2019 1.9696 38 1 -0.8737 -6.6063 5.7127 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057604500.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:46 Heat of formation + Delta-G solvation = -36.175498 kcal Electronic energy + Delta-G solvation = -24202.937102 eV Core-core repulsion = 20433.301397 eV Total energy + Delta-G solvation = -3769.635705 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.57671 -41.04476 -40.22041 -38.15479 -37.36187 -36.48049 -34.49110 -34.23654 -32.18611 -30.77336 -29.57343 -28.83084 -27.54168 -25.64815 -23.34328 -23.17679 -22.12371 -21.48911 -19.90336 -19.82064 -19.02881 -18.42283 -17.72450 -17.26514 -16.93646 -16.61372 -16.19696 -16.09899 -15.85628 -15.01044 -14.80495 -14.71654 -14.52636 -14.43371 -14.06132 -13.89206 -13.76844 -13.52312 -13.40544 -13.18580 -12.90821 -12.85442 -12.66020 -12.29820 -12.15957 -11.98246 -11.94179 -11.72169 -11.66015 -10.99805 -10.87930 -10.65727 -10.29028 -9.01532 -8.49792 -6.29011 -0.60346 -0.33848 0.69946 1.24750 1.36174 1.37761 1.52934 1.70952 2.11494 2.20705 2.46967 2.69303 2.83403 3.02291 3.12543 3.39684 3.62642 3.90825 3.98171 4.03818 4.20036 4.23559 4.31273 4.43909 4.52055 4.62172 4.65999 4.72832 4.81187 4.88957 4.93017 5.03184 5.08144 5.18300 5.24105 5.30973 5.40783 5.87667 6.18571 6.50949 6.56639 6.74085 6.96438 7.83428 8.70590 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.027953 B = 0.002856 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.453211 B = 9802.740799 C =10171.253122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.228 3.772 3 N -0.494 5.494 4 C 0.261 3.739 5 C -0.298 4.298 6 C 0.303 3.697 7 O -0.457 6.457 8 N -0.349 5.349 9 N -0.306 5.306 10 C 0.195 3.805 11 C -0.123 4.123 12 C -0.180 4.180 13 C -0.041 4.041 14 C -0.092 4.092 15 C 0.401 3.599 16 O -0.576 6.576 17 O -0.249 6.249 18 C -0.416 4.416 19 H 0.085 0.915 20 C -0.006 4.006 21 N -0.906 5.906 22 Si 1.013 2.987 23 H -0.262 1.262 24 H -0.265 1.265 25 H -0.260 1.260 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.180 0.820 30 H 0.428 0.572 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.742 13.385 -11.210 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.066 3.934 3 N -0.208 5.208 4 C 0.033 3.967 5 C -0.329 4.329 6 C 0.105 3.895 7 O -0.265 6.265 8 N -0.186 5.186 9 N -0.080 5.080 10 C 0.080 3.920 11 C -0.180 4.180 12 C -0.186 4.186 13 C -0.079 4.079 14 C -0.129 4.129 15 C 0.248 3.752 16 O -0.473 6.473 17 O -0.158 6.158 18 C -0.492 4.492 19 H 0.103 0.897 20 C -0.206 4.206 21 N -0.543 5.543 22 Si 0.833 3.167 23 H -0.186 1.186 24 H -0.189 1.189 25 H -0.185 1.185 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.197 0.803 30 H 0.289 0.711 31 H 0.131 0.869 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.169 13.163 -10.646 18.797 hybrid contribution -0.020 -0.407 -0.268 0.488 sum 8.149 12.756 -10.915 18.662 Atomic orbital electron populations 1.21125 0.84747 1.05913 1.05561 1.22329 0.99149 0.86288 0.85591 1.68180 1.03389 1.29196 1.20050 1.20865 0.88967 0.86794 1.00049 1.21242 0.88899 0.99821 1.22978 1.19587 0.87077 0.87788 0.95077 1.84836 1.33995 1.71570 1.36138 1.77761 0.90356 1.15533 1.35000 1.46755 1.06118 1.06424 1.48704 1.20948 0.91701 0.86434 0.92889 1.21179 1.00578 0.90246 1.05996 1.20071 0.90803 0.98070 1.09699 1.20194 1.01619 0.91040 0.95076 1.21195 1.01215 0.91029 0.99484 1.24275 0.80244 0.88575 0.82063 1.90536 1.56310 1.66615 1.33881 1.83906 1.63272 1.35381 1.33234 1.21362 1.35601 0.97245 0.95003 0.89692 1.26482 0.97646 1.03131 0.93321 1.70075 1.45194 1.40826 0.98244 0.84734 0.78347 0.75271 0.78388 1.18636 1.18941 1.18486 0.87724 0.88386 0.87765 0.80308 0.71071 0.86918 0.89537 0.87523 0.88770 0.87669 0.87710 0.86987 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 9.80 71.23 0.70 -1.22 16 2 C 0.23 5.18 6.83 43.12 0.29 5.47 16 3 N -0.49 -13.14 10.40 -180.70 -1.88 -15.02 16 4 C 0.26 7.32 7.91 133.10 1.05 8.37 16 5 C -0.30 -7.43 10.93 22.62 0.25 -7.18 16 6 C 0.30 7.44 8.39 84.93 0.71 8.15 16 7 O -0.46 -8.30 13.66 -92.69 -1.27 -9.56 16 8 N -0.35 -9.78 12.52 -170.70 -2.14 -11.92 16 9 N -0.31 -8.44 3.89 -180.80 -0.70 -9.15 16 10 C 0.20 4.70 6.85 41.23 0.28 4.98 16 11 C -0.12 -2.40 9.27 71.24 0.66 -1.74 16 12 C -0.18 -4.07 5.11 -20.01 -0.10 -4.17 16 13 C -0.04 -0.95 3.56 29.85 0.11 -0.85 16 14 C -0.09 -2.69 5.66 29.85 0.17 -2.52 16 15 C 0.40 17.67 7.91 71.24 0.56 18.23 16 16 O -0.58 -27.53 15.22 20.78 0.32 -27.22 16 17 O -0.25 -13.75 9.75 14.78 0.14 -13.60 16 18 C -0.42 -24.04 9.65 67.94 0.66 -23.38 16 19 H 0.09 4.92 6.86 -2.91 -0.02 4.90 16 20 C -0.01 -0.32 5.49 84.87 0.47 0.14 16 21 N -0.91 -52.39 13.67 21.62 0.30 -52.09 16 22 Si 1.01 42.03 29.55 68.60 2.03 44.05 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 25 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 26 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.10 1.52 6.00 -2.39 -0.01 1.50 16 29 H 0.18 3.67 8.06 -2.91 -0.02 3.65 16 30 H 0.43 2.71 9.06 -74.06 -0.67 2.04 16 31 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.09 1.76 8.12 -2.39 -0.02 1.74 16 33 H 0.11 1.99 5.86 -2.39 -0.01 1.98 16 34 H 0.09 2.16 6.66 -2.39 -0.02 2.14 16 35 H 0.11 2.32 5.96 -2.39 -0.01 2.30 16 36 H 0.10 2.85 7.40 -2.39 -0.02 2.83 16 37 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -77.60 332.21 3.06 -74.54 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.46 Total: 15.70 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 5.81 Total: 4.27 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -4.43 Total: -88.18 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -0.81 Total: -50.39 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -77.60 3.06 -74.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057604500.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.364 kcal (2) G-P(sol) polarization free energy of solvation -77.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds